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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048779 ID=TCONS_00048779|Name=TCONS_00048779|organism=Clytia hemisphaerica|type=transcript|length=1645bp
CACTCAAATCAagaaattttgacccttttatATTGAAACCAGCAGTATAA
GCGTTGATTTCACAGCTGATGGCTACCAAATAATTTTGAATAGATGAGTT
AATTTCAATTGAGCGGTCTGTTTAATTTCTTTTCCGCCACATGAGTCCAG
CCTTTCGCCAAGAAAGCTTATGCTGACACATTTCTAATTTTTGGTACAAA
ATTCTATGACTTGCTTGAAGGTTCGTTGGTTTATTCTAATGTatttaaga
ataaaaaaatgatataaaatagtAGGACTATGGTGATCAGATTCTAAAGT
TTCTCACAAACACCAAAGCTTTTTACTGTGAATAATAACAGAAAACATAC
TTTTATAATGTAAGTAAGACACTTATAAGACTGTCCTTATTTCAGAGAAA
AAGCTATCTCAAAAAGAAATGTCTCGTGTCGGGGAACGGTGCAGATCTGT
CGAAAAGGCTGACGTTCAAGAACACGCAGAAAGCATTGTTGGActtctca
aaaaaattatcacTGATAACTTTGGTACGAACGGCATGAAGTACAGAATG
ACTGTACTTGAACAATCATTCATTAAGTTTTTGGTGATGAAAATGACGAA
TATAAAGCCAGAAGAGGCGCAGTTTTATCTCCGTAATTACGGTAATTTGT
TCTCTCTGTCTGTCAACAAATTCATTGCTTAAAGTTTTGGTCGAATATAT
TCAATTAGCCATAACTTTAGTTTAGTATTTTCATATTTGTTCAAGAAACT
TGCATTATCCATAATAATAAAGGCCAGTTGCTCAAAATGAAGCTAGGGGT
TTCAAAATTTGGGGTTTTCTGAGAGAAGGGGTGATGCTAGAAAAGAAGGT
GTCAGAGTCAGACTAAGTTAATGATTTATGACCCTTGAAATATCCAAAAC
ATATTGGTAGAAATTACTTTGGCCGTACAGTACAAACTTTcgtgagcaga
aactttcgcgattttcgcgattttgacccttttcccgaaagtaaatgtct
ttaaaaattctaggaagggccattcgcgaaagtttatgctcgcgaaaaat
tcttaacaaataagaaaatctgTAAATCTTCAAacattgaataaaatgta
acttttataaTAAATCAAAgtacaaatgtttcaagccaatccaagaagta
tttgtccctctaagccattttttcatgtgaaaagttcgcgaaagtttatg
ctcgcgaaaaatatttttccgttaaattcgcgaaagtaaatgttgcgaat
ttcgcgatttttcgtcctcgcgaaagtttctgctcgcaaaagtttgtact
cCTAAAGTATTGAAATCCTTCACTTTGTCATTATGTTTCTTTACTATAAA
ACGAAGATTGAGTGAGATCACTGACAAAGTAAACAgtgagattatgtatc
ggagatattctacgactacggttgcggggctgcccatGCGGGTTGTCACC
AAACGTGTGTAAATAGCTGATGGTTCAATTTAACTGaccgatttttcaat
ttcttttcagaATCATCAGATCAGGCTTCCGTACCTGAATGTACGTACGT
CAATGAGAATGACAATCATAATGAAGGTACAAGGTTTAAAGCCTTTTTTA
AAGTAGGCATTATTCTGAGACTTTAGGTTTATTAAGAGATAAAAC Run BLAST on NCBI transcript from alignment at scaffold_146:52470..54114 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048779 ID=TCONS_00048779|Name=TCONS_00048779|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at scaffold_146:52470..54114 (Clytia hemisphaerica)
GTTTTATCTCTTAATAAACCTAAAGTCTCAGAATAATGCCTACTTTAAAA
AAGGCTTTAAACCTTGTACCTTCATTATGATTGTCATTCTCATTGACGTA
CGTACATTCAGGTACGGAAGCCTGATCTGATGATtctgaaaagaaattga
aaaatcggtCAGTTAAATTGAACCATCAGCTATTTACACACGTTTGGTGA
CAACCCGCatgggcagccccgcaaccgtagtcgtagaatatctccgatac
ataatctcacTGTTTACTTTGTCAGTGATCTCACTCAATCTTCGTTTTAT
AGTAAAGAAACATAATGACAAAGTGAAGGATTTCAATACTTTAGgagtac
aaacttttgcgagcagaaactttcgcgaggacgaaaaatcgcgaaattcg
caacatttactttcgcgaatttaacggaaaaatatttttcgcgagcataa
actttcgcgaacttttcacatgaaaaaatggcttagagggacaaatactt
cttggattggcttgaaacatttgtacTTTGATTTAttataaaagttacat
tttattcaatgtTTGAAGATTTAcagattttcttatttgttaagaatttt
tcgcgagcataaactttcgcgaatggcccttcctagaatttttaaagaca
tttactttcgggaaaagggtcaaaatcgcgaaaatcgcgaaagtttctgc
tcacgAAAGTTTGTACTGTACGGCCAAAGTAATTTCTACCAATATGTTTT
GGATATTTCAAGGGTCATAAATCATTAACTTAGTCTGACTCTGACACCTT
CTTTTCTAGCATCACCCCTTCTCTCAGAAAACCCCAAATTTTGAAACCCC
TAGCTTCATTTTGAGCAACTGGCCTTTATTATTATGGATAATGCAAGTTT
CTTGAACAAATATGAAAATACTAAACTAAAGTTATGGCTAATTGAATATA
TTCGACCAAAACTTTAAGCAATGAATTTGTTGACAGACAGAGAGAACAAA
TTACCGTAATTACGGAGATAAAACTGCGCCTCTTCTGGCTTTATATTCGT
CATTTTCATCACCAAAAACTTAATGAATGATTGTTCAAGTACAGTCATTC
TGTACTTCATGCCGTTCGTACCAAAGTTATCAgtgataatttttttgaga
agTCCAACAATGCTTTCTGCGTGTTCTTGAACGTCAGCCTTTTCGACAGA
TCTGCACCGTTCCCCGACACGAGACATTTCTTTTTGAGATAGCTTTTTCT
CTGAAATAAGGACAGTCTTATAAGTGTCTTACTTACATTATAAAAGTATG
TTTTCTGTTATTATTCACAGTAAAAAGCTTTGGTGTTTGTGAGAAACTTT
AGAATCTGATCACCATAGTCCTactattttatatcatttttttattctta
aatACATTAGAATAAACCAACGAACCTTCAAGCAAGTCATAGAATTTTGT
ACCAAAAATTAGAAATGTGTCAGCATAAGCTTTCTTGGCGAAAGGCTGGA
CTCATGTGGCGGAAAAGAAATTAAACAGACCGCTCAATTGAAATTAACTC
ATCTATTCAAAATTATTTGGTAGCCATCAGCTGTGAAATCAACGCTTATA
CTGCTGGTTTCAATataaaagggtcaaaatttctTGATTTGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048779-exon-scaffold_146-1491911889:52470..54114 | TCONS_00048779-exon-scaffold_146-1491911889:52470..54114 | Clytia hemisphaerica | exon |
| TCONS_00048779-exon-scaffold_146-1510915933:52470..54114 | TCONS_00048779-exon-scaffold_146-1510915933:52470..54114 | Clytia hemisphaerica | exon |
| TCONS_00048779-exon-scaffold_146-1575043694:52470..54114 | TCONS_00048779-exon-scaffold_146-1575043694:52470..54114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:52470..54114 . |
Blast
The following BLAST results are available for this feature:
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