TCONS_00048671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048671
Unique NameTCONS_00048671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048671 ID=TCONS_00048671|Name=TCONS_00048671|organism=Clytia hemisphaerica|type=transcript|length=2390bp
ATTTTACATCGCTCTTTTATAAGCGTCATATTTgatataaaacatgaaaa
tatatgatattaaaaattaaagatatgattttttaaagaaaatagaagGA
ACTTTTTAAAGAAGTGGTGAATAATTCGTTGTGAGGGAGTTGAAATTTGT
GAGAGGTGAACATCAAGAAAGATGAGTGGGCCTGAAGACGGATTTCCTTA
TAACTCCATAATCCGCGAGACCGATTTGAGAGAGCTCAAAGAGACTGACC
TACTAGACTACGAAGACGATTTCCAAGAAGCGAATTTGACTTTATATGAT
TTCATCGAcgaagaaagtatgaatcaattaaataaaaacaaagatatgCC
CTATCTACCGAGGGAGAAAGAAGCGAAGGCAGACAAGCTATCAGACAATC
GTAACATGGAAAGCTCTACACTGGATATCAAAGAGTTAAGGTCAACCGAT
ATTTCGAAAATTGCAGCGATAAAGGAAACGGATTTATGTAGTAATGATGA
TGATTCGAGTACAGACGTCGAGCAACGTTCCCAAGAGGAAAGCGTGTCTC
TGTCCTCAGGTGATACCCTTGGACATAATGATGAGGATTCAGAGCTATGG
AATTTAGACAATGCAGAAAGTGTCAGCTTAAGCACTGACAGTGGTATTAT
AAATGAAGATTGCTCTAAATTGCATTTAGATCTTGATTACAATCACTTCA
ATTCTGCAGCCATAAAATTCCAAGATTTAGAAAGTGATTTTTTTGATACC
GACTGTGAGGCCATGGATAAATCACCAACCGATGATTGTTTTGAAACAAA
TCGTGGTGAGACCAAGGATATTGTTCGTTTTCAAGATATAGagagtgatt
tttttgaaacagaTTGTGAGGGGGTGGACACCAACACAAATGATAATACG
GTGAAATTTCAAGATATCGAGAGCGACTTCTTCGATGAAGACGATGAGAT
CTCACCTTCTAGTCTAGctctgaaaaacaaaacaaaaacaactgtGGCCG
GGTCATCTAAAAAAGAACCATGCGAAATtgatcaacaaaaacaaattctg
ACTCGATTAACCAGTGCTAAGGATAAGCGAGCAACGATGACGAATAGTTT
GTTACGTACCACGATTGAAGAACTGGAACGTGCGTTGAGTAATAGTAATA
CTTTGTTGATTAAGCGAGACAAAAAGATTCAAGACCTAAGGAAACATAAC
AATGAGTTGAAGAAAAGTTTGTCAGAGGAGCTTGAAAACAGCGCACAATT
AAAACTACTACTTCTTGAAAAAGAGGCTGTGGTAAGTGAAAAAGAGGCTA
AAATTGCGTCATATCAAACTGAATGTGAACGTTTGAATCAAGAAATTACA
GACTTGAGGCTATATCAATTGAACAATATGGAAGACTTTTCGATAAGTTG
CGATCCTTCTAATCTCGATAATTCAGTCGAAACTGACTTATTGGGTGATC
AAGACATTACGTCATCACcaaatgtaaagaaaaaatCGTTGAATAGAAAC
CAGTCTTCTTGTTCACGACAAGAGACGCCGATTTGTAAAAGTAAGCGAAT
GAGTAGCCCGGACACTACTTCACAACAAAAGACTAGCCCGTTTACAACCT
CGACGACACCGAAAAGTACCATAGCTTCTAATATAAAAACACGACCGGGA
GCTTTATCAAAATCAAGCCCAGCAAGCCCTATGTCCCCACAGGGTGGGAA
AGTTGGGAATAACCCAGACAACGTGAGTAGTACGGAACTTCACGCACGCC
TACAAATGAAATTCATGAGGGATGCTTTCTTTTATTACATGATTGGTTTT
CATTCAGACGAACAAATAAATGCTATTTTGGCTATATTAGATTACGGCGA
TAAAAGACAAGATTTTGTTCTTGAAGCTCACAAACTGAAAAAGAATGGTA
AGAAATTTAATGTGAGTAAAGTTTCGACACGTGGGTTGACTTTTGTACAA
GATATTCAACCTAAATGATAAAAGTACAgtcaaaacaacgttgtatgcca
ACTCGGGACATTTCTTGCTACTtgaacttttattttgttatgtaaaatat
ttttcttgaattatAATTTATGATAAACTTTCTTGATgcattttcgaaaa
agaaagtTTCTGTAGctcaaaacaccaaaaaaaattatgtagaCTGCAAT
CAACCTNGATgcattttcgaaaaacaaagTTTCTGTAACTCAAAACACCA
AAAGAAATTATGTAGACTGCAATCAACCTCGTTCCCTAcatattatcagc
tttttgatgtttattgatagcgctagataataccccggctagatattctc
tggcgtccatcagtaacataaataaagcctggaatacacggggacgaggt
tggacTGCAATAATCAGCCAGAATCAATAGCCTTTCCTCA
Run BLAST on NCBI

transcript from alignment at scaffold_145:189781..193795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048671 ID=TCONS_00048671|Name=TCONS_00048671|organism=Clytia hemisphaerica|type=transcript|length=4015bp|location=Sequence derived from alignment at scaffold_145:189781..193795- (Clytia hemisphaerica)
ATTTTACATCGCTCTTTTATAAGCGTCATATTTGATATAAAACATGAAAA
TATATGATATTAAAAATTAAAGATATGATTTTTTAAAGAAAATAGAAGGA
ACTTTTTAAAGAAGTGGTGAATAATTCGTTGTGAGGGAGTTGAAATTTGT
GAGAGGTGAACATCAAGAAAGGTTGTGATTTTGATGAGGAAATTATAATA
TTTTGCTTGGCATAAAACATACAAGGAATAATTCAATTTTAAGTGGAAAA
GGTAGAGTTCTTCAAAATTATTTGAGTATGAAATATACTTTTCTTGGAAC
TAGAAAAACCTTTTAAAAATTGTTTGGGTACTGTTAAAAGTTGTATCTTT
ATTAGTAAATTGTAGTATTTGGATAGGTATTCAAGCTTGAAATTAATAAC
GATCTACTAATGAAGATCAATTCCTTAACTGTAAACAAACATGAACATGA
AGGTTTCTTTTTTTTAGAAAGCAGCTTTAATTTGTATTTGTTAGTGTTTG
AAACAAACTATGCTCAAAGAATATGTTTGGATGGAAACAGCCATCAGTAG
TGATTTATCTTTTAACCTTTGTGTTTTCAATTTCTTTTATTCCAATACAA
TACTCTTCAGTTCTTGCTAAAACTATAAAAGTGTAAGAGTTGAATATTTT
GGCTGAGGGATTAGTGCAACTCAGTTTTTGGGATTCTGAAATAGAGTATT
CGTTTGAGGCTTGTAATTTTTACCGTTTTTGGGCATTCTTGTGATGAAAC
ACTAGTGAAGGTACAACCAAAATTTATGTTTTGTACGAGAATTTTCTTCT
TCGATAAAGTCTTGATGACTCTTTCGAAAATCATCTGCTAAGAGAGGTTT
CCCTGTTGTTTCTTTTGGAAAAATTTCTTGAAAATTAAATAACAAAAGAA
GTTTTCATAATATTTTTTCCTTTGTGAATTTTTTGAGGATTATAATATTT
TCAGGGGAAGAGATTATAATCTCTAGCGAGTTCGTTTAAAAACGGAAATT
TTGAAAAAATTTTTGTGTAAAACTTTTGACTAACATATTTCAGAGTCTTT
TAACATCTCCTTCTCACAGACCCGGTAGGATTTTTTCAGCCAGTGGGGAT
AAAAGTAACGGACTGAAACTCGATGGGGATTGATATTCGGAAATGACATT
CCCATATTTCCCATATTTTCTTATGAATGGGGATTCGAATTCCATTGTTT
TCAAGTCAGAAGATTCAGTGGGGATGGAAAAAAGCATCGTATTTTGCAGT
GAGGATTGGTTTATTTGGATATTCTCTGTAGGGACAAAAATTTGAGTATT
ATTTTCCACTGGGGACGATAATTTGACCAATTTTTCCAGTGAGAAGGGGT
CCCAGTGGGTTTGTGAGAAAGGGGTGTATTTTACAATGATAATCCAAGTG
GTGAGGGGGTCCAAATGGCCACTTGATTAAAAAACGACCGTACGTGCAGC
CTAAAATTAGGGCTTTGAAATCGAACCCTTAAAAATTAGAGTAAATTTGG
GCGAAAAATCGACCCTTACAGTGCATTTTCTTTATTTTCTTGAAAACTTT
TGACCATTTTAAGGCAGAGTATGGTCAGATTCTCTAAATTTTACACCCTT
TTACACTTTTTCTCATCTTTTCTCATTTCGACTCTTATAGTTAACTTTGG
GCAGTCAAAACATGTGACTACTCAAAAAAATTTACGTGTTTTTGTTCCCA
AGTTTTGCAGATAATGGCGGGAACTGGAATTCTGAATTCTGGGACAAGTC
TCGTTAGAACCGTTTCATAACCATTTTCTTTTCTTTTTTCTCCTAGATGA
GTGGGCCTGAAGACGGATTTCCTTATAACTCCATAATCCGCGAGACCGAT
TTGAGAGAGCTCAAAGAGACTGACCTACTAGACTACGAAGACGATTTCCA
AGAAGCGAATTTGACTTTATATGATTTCATCGACGAAGAAAGTATGAATC
AATTAAATAAAAACAAAGATATGCCCTATCTACCGAGGGAGAAAGAAGCG
AAGGCAGACAAGCTATCAGACAATCGTAACATGGAAAGCTCTACACTGGA
TATCAAAGAGTTAAGGTCAACCGATATTTCGAAAATTGCAGCGATAAAGG
AAACGGATTTATGTAGTAATGATGATGATTCGAGTACAGACGTCGAGCAA
CGTTCCCAAGAGGAAAGCGTGTCTCTGTCCTCAGGTGATACCCTTGGACA
TAATGATGAGGATTCAGAGCTATGGAATTTAGACAATGCAGAAAGTGTCA
GCTTAAGCACTGACAGTGGTATTATAAATGAAGATTGCTCTAAATTGCAT
TTAGATCTTGATTACAATCACTTCAATTCTGCAGCCATAAAATTCCAAGA
TTTAGAAAGTGATTTTTTTGATACCGACTGTGAGGCCATGGATAAATCAC
CAACCGATGATTGTTTTGAAACAAATCGTGGTGAGACCAAGGATATTGTT
CGTTTTCAAGATATAGAGAGTGATTTTTTTGAAACAGATTGTGAGGGGGT
GGACACCAACACAAATGATAATACGGTGAAATTTCAAGATATCGAGAGCG
ACTTCTTCGATGAAGACGATGAGATCTCACCTTCTAGTCTAGCTCTGAAA
AACAAAACAAAAACAACTGTGGCCGGGTCATCTAAAAAAGAACCATGCGA
AATTGATCAACAAAAACAAATTCTGACTCGATTAACCAGTGCTAAGGATA
AGCGAGCAACGATGACGAATAGTTTGTTACGTACCACGATTGAAGAACTG
GAACGTGCGTTGAGTAATAGTAATACTTTGTTGATTAAGCGAGACAAAAA
GATTCAAGACCTAAGGAAACATAACAATGAGTTGAAGAAAAGTTTGTCAG
AGGAGCTTGAAAACAGCGCACAATTAAAACTACTACTTCTTGAAAAAGAG
GCTGTGGTAAGTGAAAAAGAGGCTAAAATTGCGTCATATCAAACTGAATG
TGAACGTTTGAATCAAGAAATTACAGACTTGAGGCTATATCAATTGAACA
ATATGGAAGACTTTTCGATAAGTTGCGATCCTTCTAATCTCGATAATTCA
GTCGAAACTGACTTATTGGGTGATCAAGACATTACGTCATCACCAAATGT
AAAGAAAAAATCGTTGAATAGAAACCAGTCTTCTTGTTCACGACAAGAGA
CGCCGATTTGTAAAAGTAAGCGAATGAGTAGCCCGGACACTACTTCACAA
CAAAAGACTAGCCCGTTTACAACCTCGACGACACCGAAAAGTACCATAGC
TTCTAATATAAAAACACGACCGGGAGCTTTATCAAAATCAAGCCCAGCAA
GCCCTATGTCCCCACAGGGTGGGAAAGTTGGGAATAACCCAGACAACGTG
AGTAGTACGGAACTTCACGCACGCCTACAAATGAAATTCATGAGGGATGC
TTTCTTTTATTACATGATTGGTTTTCATTCAGACGAACAAATAAATGCTA
TTTTGGCTATATTAGATTACGGCGATAAAAGACAAGATTTTGTTCTTGAA
GCTCACAAACTGAAAAAGAATGGTAAGAAATTTAATGTGAGTAAAGTTTC
GACACGTGGGTTGACTTTTGTACAAGATATTCAACCTAAATGATAAAAGT
ACAGTCAAAACAACGTTGTATGCCAACTCGGGACATTTCTTGCTACTTGA
ACTTTTATTTTGTTATGTAAAATATTTTTCTTGAATTATAATTTATGATA
AACTTTCTTGATGCATTTTCGAAAAAGAAAGTTTCTGTAGCTCAAAACAC
CAAAAAAAATTATGTAGACTGCAATCAACCTNGATGCATTTTCGAAAAAC
AAAGTTTCTGTAACTCAAAACACCAAAAGAAATTATGTAGACTGCAATCA
ACCTCGTTCCCTACATATTATCAGCTTTTTGATGTTTATTGATAGCGCTA
GATAATACCCCGGCTAGATATTCTCTGGCGTCCATCAGTAACATAAATAA
AGCCTGGAATACACGGGGACGAGGTTGGACTGCAATAATCAGCCAGAATC
AATAGCCTTTCCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030927XLOC_030927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048671-exon-scaffold_145-1575043694:193625..193795TCONS_00048671-exon-scaffold_145-1575043694:193625..193795Clytia hemisphaericaexon
TCONS_00048671-exon-scaffold_145-1575043694:189781..191999TCONS_00048671-exon-scaffold_145-1575043694:189781..191999Clytia hemisphaericaexon
TCONS_00048671-exon-scaffold_145-1510915933:193625..193795TCONS_00048671-exon-scaffold_145-1510915933:193625..193795Clytia hemisphaericaexon
TCONS_00048671-exon-scaffold_145-1510915933:189781..191999TCONS_00048671-exon-scaffold_145-1510915933:189781..191999Clytia hemisphaericaexon
TCONS_00048671-exon-scaffold_145-1491911889:193625..193795TCONS_00048671-exon-scaffold_145-1491911889:193625..193795Clytia hemisphaericaexon
TCONS_00048671-exon-scaffold_145-1491911889:189781..191999TCONS_00048671-exon-scaffold_145-1491911889:189781..191999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:189781..193795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.55995e-06	2.10369e-08	1.86749e-07	1.91663e-08	1.48363e-08	3.04819e-08	5.2745e-08	0.73837	1.93437	1.58287	2.56321	1.39314e-09	3.53494	5.68151	5.89019	6.01723	3.45621	5.6612	1.91837	2.52168	4.03082e-07	2.85806e-05	1.40404	3.97555	3.60558	2.13251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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