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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048564 ID=TCONS_00048564|Name=TCONS_00048564|organism=Clytia hemisphaerica|type=transcript|length=3209bpRun BLAST on NCBI transcript from alignment at scaffold_143:489362..495967- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048564 ID=TCONS_00048564|Name=TCONS_00048564|organism=Clytia hemisphaerica|type=transcript|length=6606bp|location=Sequence derived from alignment at scaffold_143:489362..495967- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048564 vs. Swiss-Prot (Human)
Match: EST1A (Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 9.379e-38 Identity = 93/265 (35.09%), Postives = 140/265 (52.83%), Query Frame = 2
Query: 2423 GDLERYVTHLQQDNNYCQAQKCYREAQMLAPKNGKSYNQLAVVAVTTKRKLDAVYYYCRSLSASNPILTARDRLTSIFHEIKKKAHVFKQRDEIWIFIHLHQM-------YKVMLTDNNELVYLTQPPLKNHSSVTDTAVVKKKPLSRTTSRQDKLSLSKINRGYTIYFLHIHCKLYTNIGLEEFTRVHQETLSYFKTLLQYPKASSVKQENLLKYMAINIFSIHMLIEKQQGLQEVMANTALDFAIVFAVDMFGVLCSHCSKLL 3196
GD+ RY NY +A+ Y +AQ +APKNG+ YNQLA++AV T+RKLDAVYYY RSL+ASNPILTA++ L S+F E K+KA +++ + Q ++ + D L P S T++ S + LS S +N+ + + FLH H KL+T IG+E F V ++ L F+ LLQ+ S + +L+ M IN+F++H + + E + + A + MF +L C+ LL
Sbjct: 733 GDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKD-----SEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQH-SPSPIGSTRMLQLMTINMFAVHN-SQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLL 990 HSP 2 Score: 150.214 bits (378), Expect = 1.417e-36 Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2
Query: 1616 QLYKELIVHFQEYSFKHDFETALWKSAYHNIITKFRDIVDSTKNIEKDKLQEVGDLYWKFLQNGIQFLDELVVLLQEHSNFDLQEILDD-PVKMHHCGKQVKLALRSCHLLLIYIGDLERYVTHLQQDNNYCQAQKCYREAQMLAPKNGKSYNQLAVVAVTTKRKLDAVYYYCRSLSASNPILTARDRLTSIFHEIKKKAHVFKQR 2230
QLY+ I+ E+S + + LWK+A++ +I KFR +V N+E +++ + + L G F D L+ LQ F L++ +D ++ K VK AL S +I GD+ RY NY +A+ Y +AQ +APKNG+ YNQLA++AV T+RKLDAVYYY RSL+ASNPILTA++ L S+F E K+KA +++
Sbjct: 621 QLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDP-NVENP--EQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKK 823 The following BLAST results are available for this feature:
BLAST of TCONS_00048564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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