TCONS_00048552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048552
Unique NameTCONS_00048552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048552 ID=TCONS_00048552|Name=TCONS_00048552|organism=Clytia hemisphaerica|type=transcript|length=1518bp
TTAATTGATTATTTCTTTTTACCATTCAAAAAAATGGTTCTAATGTAATC
AGCTCTCTTTTAAGGTCATGCACATTAACAAATTCTGTATTCTTTTCATA
GAAGCTACTGAGTGGTTTAACTCAAAGACACTATAGAAAtttgaaataca
atttttcgaaaaaaacaacTAAAGTTAAACACAATGTCAACTGATACCAA
TGGACATGCTACAATAAatgaGGTTTCCAACCTATCCATCAAAGGACTGG
GTGATATTCAACTCAAAACACCTCACATGACATCATCAACAGCTTCCAAG
ACAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGG
GATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAG
CTGGTGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGA
CGTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGATGATAAAAGAGAT
CATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCACT
TCGCCGAAGCACAAATCTTGGAAACACTCGGCGTTGATATGATCGATGAA
TCTGAAGTATTAACGCCAGCTGACGAAACGCATCACGTGGACAAAGAACC
CTTCAAAATTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGA
GGAGAATCAGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGC
ACTGGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTCGCA
GATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTATGCTA
AAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATGGGA
CGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGCCACACCAGCGGA
TGTTTCACTTCTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCG
GAATCTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCT
GCAGTAACCTACTACAACCAACCGGCTAAAATAGCAGAACTGAGTGAAGA
CCTGGGACCAGCCATGTCTGGGCCCACACATAGAGAATTGAAACACCATA
AGACGGACACTAACCCTGGATTCAAAGCTGTATCTGTAGTCGAATAAACT
TATTTAATATTAGATttcaatatatatttttagGAAGGAAGGATATAATC
CTTGGATAAATATTGcgtgattttttttatgaataatgaattaatttttt
tttgttaatatactgtactttttttaaatactacAATATGAGCGAACTTG
AAAATATAATACTGTAATGGAAATGATATAATACATAAAAAAGATAATAG
AAGATATAAAGCATTGAATTTACAAAAGTCTCGATTTTTTTTCGTAGTTT
TACCGGTCACGGAATCAAAAGATATTAACAAAAAGAATCTTCGAAGATAT
TAAAAAATGGATATTAGT
Run BLAST on NCBI

protein sequence of TCONS_00048552-protein

>TCONS_00048552-protein ID=TCONS_00048552-protein|Name=TCONS_00048552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MSTDTNGHATINEVSNLSIKGLGDIQLKTPHMTSSTASKTGSFKVKAGMA
QMAKGGIVMDVTNAAEARVAEEAGACAVMALERVPADIRRDGGVARMSDP
KMIKEIIEAVTIPVMAKCRIGHFAEAQILETLGVDMIDESEVLTPADETH
HVDKEPFKIPFVCGARDLSEALRRISEGAAMIRTKGEAGTGDVAEAVRHA
RTIRSQIRRAQGMDKCELHTYAKELRVPFDLLQKTVEMGRLPVVNFAAGG
LATPADVSLLMQLGVDGVFVGSGIFKSAEPEKRAKAMAAAVTYYNQPAKI
AELSEDLGPAMSGPTHRELKHHKTDTNPGFKAVSVVE
Run BLAST on NCBI

transcript from alignment at scaffold_143:347694..353347-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048552 ID=TCONS_00048552|Name=TCONS_00048552|organism=Clytia hemisphaerica|type=transcript|length=5654bp|location=Sequence derived from alignment at scaffold_143:347694..353347- (Clytia hemisphaerica)
TTAATTGATTATTTCTTTTTACCATTCAAAAAAATGGTTCTAATGTAATC
AGCTCTCTTTTAAGGTCATGCACATTAACAAATTCTGTATTCTTTTCATA
GAAGCTACTGAGTGGTTTAACTCAAAGACACTATAGAAATTTGAAATACA
ATTTTTCGAAAAAAACAACTAAAGTTAAACACAATGTCAACTGATACCAA
TGGACATGCTACAATAAGTAAGACTGCTTTTTCAAATTGAATAGGTTTCT
AAGATTGAAATTTATTCAAACCGTTTTGGCATAGATTATGAGGATTTAAC
TTTATGAGAAAATTTGTTTGCTTTTTTTCGGACACCCTGTTTACATAAAG
TGATTGTGTCTAGTTGGCTCAACGTCTCAACACCAGATTGATTGAGTTTG
TTTTTGAGTTCATTAAAAATCGAATTTCATTTTAAATTTTTAGATGAGGT
TTCCAACCTATCCATCAAAGGACTGGGTGATATTCAACTCAAAACACCTC
ACATGACATCATCAACAGCTTCCAAGACAGGTACCAATTCAGACCTCTAC
ATTCTTAATCATAATAAAAGCAAAACAAGATTGATTGTGGCATGAAGTGA
AAATCAAAACGGACCTTTTTTTTATAAGCAATTGGGTACCTCTTACTATG
CTTAGTATTCTATCGTTCTTGGAAAATAGAGCCATTGTTTAGGTACCAAA
AGCTGAGTTATTCTACTAATTTCGCTTATTTGAAATTTAAAAAATGAGAA
AGTTTAAGCTCAACACTACAAAATAGGCAAGTTGTACCATCATCATTATG
AAATGTTCAAAGTAAATTTCTCACTCACTTCAGAAGCATTCATAAACTTT
TCAGTTTGATATCTAATAAAGGATGGCTACAATAATTATTTATTATTTTT
TTAACTTTTACTCCAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGAT
GGCGAAAGGAGGGATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAG
TTGCTGAAGAAGCTGGTGTAAGTATCTAATATGAAAATAGTGGTGGTGTA
TTCTGAAGGTGATCAGTGTTTTTAAATGGTTGTCACTAAAATTACTGTCG
AGCCCGCAACTTTTCCTTGTCTCAAGAAAAATTATTCTTTGGGGGATTTA
TTAAACTTGGTTTTGAATCTATTCTACTACAGGCCTACTGCAGACTACTG
AGATTGAATGCTGGGGTGGATTTTATGAATTTTAGCATGTCTGAAGGAGA
AATTTTCTAATAATGAACTTGCAACAAATTTCTGCACACCACGGGCTTAT
GATTTAATTGACTTTAGTTTTGATTTCTATAGGCATGCGCAGTAATGGCA
TTGGAAAGAGTGCCAGCGGATATCCGACGTGACGGTGGAGTGGCAAGGAT
GTCAGATCCAAAGGTTTGACGCTTTGTTATGATTACCGTGATTCCTGGAA
ATGTAAATCAATGACTCTCTAATTCTTTCTTGATCTTCAAGGGACCGAAA
TTTTCTTTGATTTTGAGAACGATTCAAATTATGGAAGTTCGAATTAGCAA
GAGTTCACAATATAGCCATCGTTCAATCTTTTCCATTTCTAACCTTTCTG
CAATTTGAACTCTCAACAAGAAATTCGTATAAAATACTATCCTTGATTCA
GATTCGAATCTTTCTCTAATGTGAAGATAAATTTTTGTAATTCATTTTAT
TGACGATCGAATAAGAGAGTAACAGCAGGTAACCGTGGTAATGAATTTCT
TTGTTTAAAAACAAGCATTTTTGAACGTACCCTATCTTTACCTTCCCAAA
AAAGTTGGATGTTAATGACGTATCATTCTTTTTCCAGATGATAAAAGAGA
TCATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCAC
TTCGCCGAAGCANGGTGGTGTATTCTGAAGGTGATCAGTGTTTTTAAATG
GTTGTCACTAAAATTACTGTCGAGCCCGCAACTTTTCCTTGTCTCAAGAA
AAATTATTCTTTGGGGGATTTATTAAACTTGGTTTTGAATCTATTCTACT
ACAGGCCTACTGCAGACTACTGAGATTGAATGCTGGGGTGGATTTTATGA
ATTTTAGCATGTCTGAAGGAGAAATTTTCTAATAATGAACTTGCAACAAA
TTTCTGCACACCACGGGCTTATGATTTAATTGACTTTAGTTTTGATTTCT
ATAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGAC
GTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGTTTGACGCTTTGTT
ATGATTACCGTGATTCCTGGAAATGTAAATCAATGACTCTCTAATTCTTT
CTTGATCTTCAAGGGACCGAAATTTTCTTTGATTTTGAGAACGATTCAAA
TTATGGAAGTTCGAATTAGCAAGAGTTCACAATATAGCCATCATTCAATC
TTTTCCATTTCTAACCTTTCTGCAATTTGAACTCTCAACAAGAAATTCGT
ATAAAATACTATCCTTGATTCAGATTCGAATCTTTCTCTAATGTGAAGAT
AAATTTTTGTAATTCATTTTATTGACGATCGAATAAGAGAGTAACAGCAG
GTAACCGTGGTAATGAATTTCTTTGTTTAAAAACAAGCATTTTTGAACGT
ACCCTATCTTTACCTTCCCAAAAAAGTTGGATGTTAATGACGTATCATTC
TTTTTCCAGATGATAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTAT
GGCCAAATGTCGAATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACAC
TCGGCGTTGATATGATCGATGAATCTGAAGGTAGCTTTAATAATTTAAGG
AAAAAGATTAGTTGATACTCACTTTTAAAATTGTCATTTTCAAATCAGTA
TCAAGGCAAAGACCAATTTAAGTCAAAGTTGGCAACGAACATCATTTTCG
TTCATAAGTTCTAAATTCAGAATGAGGTACTTATGTTACAAAACCTGATT
ATTTTGCTGGCTGCATGCAAAATTGCTTTAAGAAATCTTTCCAAATTAGG
AGAAGTGGAGCCAAAATTTAATATTTCTTTTAAAAAAGCGTGTATTACCT
AAGGTAAGCTGAATGTTTTTGTTTTATTTATTCGTCTAGTTTATACTCAA
ACAAATTGTACTAAATATTATATTTTCCCAGTATTAACGCCAGCTGACGA
AACGCATCACGTGGACAAAGAACCCTTCAAAATTCCTTTCGTATGTGGTG
CACGTGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAAGGTGCTGCCATG
ATCAGAACTAAAGGAGAAGCTGGCACTGGTATGAACCTTTTTCGGGACAG
TTTTTTTAGGATACTTGAAATATCCTGGTGAGGATAATCATTATAATCAT
TCCAACCTTTTAATTTGTTTAATGGTACCTTCAAGGTTGTGTCGTCTTTC
TCATTGTTTATTGATATTCATAGCTAATAATCATTTTCCAATTTCCTCGT
ATTCGATGTCTGTTCATATAAACTCTGTACTGGAAGACAAGCACTGATCA
ATTTCTGTTGGGCATCGGTTTGTCTCAAGAAATGTCAGTGAAAAAATCAT
GGTCATTATAAAAAACCCCGGTCTGGCAATGTATTGTTTTAGCTTTTTGT
TCAATTTTCTTTTGTTACATACAAAAGACAAGTTGCGATTTGCATACTTT
TATCACGTTACCAAAATCTCCTCTTGGGATTGGTCTATTTTCTAATCACA
TGATCAAAAAGTTAGCAAAATAAATCGATTTTGGTACGTAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGGGGTTACACCCTCCAAAAAGCCCAAAAAGAT
GGGGGCTAAAGATGTTTCAATTATTTGGGAGCCCTAATGTACTGGGGCGA
GCTAAAATTTCATCACTTAACATAGGGGCTGAATAATTCATCTTAATGGT
TGGCTTCAATTACTCGAATTAAAACTCTTGAAGCTGAAAGCTGAAAGATT
TTCGCCTGCGGACCAAATTCTTTTATATAAAATGAGCAAAATATTATTAT
CTTAGCCTTTAAACTGCAACATAATTTACATTGAATAACCCTTTTTTGTG
GAAGAAACCCTAACCCCAGGCTGACGCTATGATCAAGCTTTGACAATCTA
AATTTAGGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTC
GCAGATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTATG
CTAAAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATG
GGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGGTAAGATAAC
CATAAAAGGTTTACGTTTCTAGTAAAAACCTTTGAATTGTAGAATGATAA
ATTTCAATACTTGTATATTTTTAAGTAGAAAGTGTTTTTGGACATCGCAG
TACTTTGGAAGGCTAGTTATAGCAATACGCTGATAAGTATTTCGCTTCAT
CAAAGCTTTTATCTAGGGCCTTGAATTCCTAGCCTATTACAGACTTTTTT
CTACGCAATGACAGAAAATGGAAGAAAAATACCGGTTTTTGGTGAGGTAC
GCGCTATTGAATTCCTCGAGTTTTTAATTGATAAAAACTCTAAGACGTCT
GTCATCTTTTAACCTTCAAAATGTTCCACTTGGCTGTTGAATGAGCTAAT
AAATTAAATCTGTTGATCTGCTTCAAGACTCATTGGGCCTACTTAGCCCT
CACCAAAAGCTTGCTCAACCTTGTTAAACTTTTGTAACTATATGTAATAT
TTTATTCTCCCAGCCACACCAGCGGATGTTTCACTTCTCATGCAATTGGG
TGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGCTGAACCAG
AGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCTACTACAACCAACCG
GCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCAGCCATGTCTGGGCC
CACACATAGAGAATTGAAACACCATAAGACGGACACTAACCCTGGATTCA
AAGCTGTATCGGTGGTCGAATAAACTTATTTAANCAAAACCGACACTAAC
CCTGGATTCAAGGCTGTATCTGTAGTCGAATAAACTTATTTAATATTAGA
TTTCAATATATATTTTTAGGAAGGAAGGATATAATCCTTGGATAAATATT
GCGTGATTTTTTTTATGAATAATGAATTAATTTTTTTTTGTTAATATACT
GTACTTTTTTTAAATACTACAATATGAGCGAACTTGAAAATATAATACTG
TAATGGAAATGATATAATACATAAAAAAGATAATAGAAGATATAAAGCAT
TGAATTTACAAAAGTCTCGATTTTTTTTCGTAGTTTTACCGGTCACGGAA
TCAAAAGATATTAACAAAAAGAATCTTCGAAGATATTAAAAAATGGATAT
TAGT

Coding sequence (CDS) from alignment at scaffold_143:347694..353347-

>TCONS_00048552 ID=TCONS_00048552|Name=TCONS_00048552|organism=Clytia hemisphaerica|type=CDS|length=9126bp|location=Sequence derived from alignment at scaffold_143:347694..353347- (Clytia hemisphaerica)
GCTGTATCTGTAGTCGAATAACCACACCAGCGGATGTTTCACTTCTCATG
CAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGC
TGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCTACTACA
ACCAACCGGCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCAGCCATG
TCTGGGCCCACACATAGAGAATTGAAACACCATAAGACGGACACTAACCC
TGGATTCAAAGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCG
TTCGCAGATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCT
ATGCTAAAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAG
ATGGGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGTATTAAC
GCCAGCTGACGAAACGCATCACGTGGACAAAGAACCCTTCAAAATTCCTT
TCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAA
GGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGCACTGATGATAAAAG
AGATCATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGT
CACTTCGCCGAAGCACAAATCTTGGAAACACTCGGCGTTGATATGATCGA
TGAATCTGAAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGAT
ATCCGACGTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGTTCATTC
AAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGGGATTGTCATGGA
TGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAGCTGGTATGAGGT
TTCCAACCTATCCATCAAAGGACTGGGTGATATTCAACTCAAAACACCTC
ACATGACATCATCAACAGCTTCCAAGACAGATGTCAACTGATACCAATGG
ACATGCTACAATAAGCTGTATCTGTAGTCGAATAACCACACCAGCGGATG
TTTCACTTCTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCGGA
ATCTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCTGC
AGTAACCTACTACAACCAACCGGCTAAAATAGCAGAACTGAGTGAAGACC
TGGGACCAGCCATGTCTGGGCCCACACATAGAGAATTGAAACACCATAAG
ACGGACACTAACCCTGGATTCAAAGTGACGTAGCTGAAGCAGTCCGCCAC
GCTCGAACCATTCGTTCGCAGATCCGAAGAGCACAAGGGATGGATAAATG
CGAACTGCACACCTATGCTAAAGAACTCCGTGTACCTTTCGACTTACTCC
AGAAAACTGTAGAGATGGGACGGTTACCTGTCGTCAACTTTGCTGCTGGG
GGACTTGTATTAACGCCAGCTGACGAAACGCATCACGTGGACAAAGAACC
CTTCAAAATTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGA
GGAGAATCAGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGC
ACTGATGATAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTATGGCCA
AATGTCGAATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACACTCGGC
GTTGATATGATCGATGAATCTGAAGGCATGCGCAGTAATGGCATTGGAAA
GAGTGCCAGCGGATATCCGACGTGACGGTGGAGTGGCAAGGATGTCAGAT
CCAAAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGA
GGGATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGA
AGCTGGTATGAGGTTTCCAACCTATCCATCAAAGGACTGGGTGATATTCA
ACTCAAAACACCTCACATGACATCATCAACAGCTTCCAAGACAGATGTCA
ACTGATACCAATGGACATGCTACAATAAGCTGTATCTGTAGTCGAATAAC
CACACCAGCGGATGTTTCACTTCTCATGCAATTGGGTGTCGATGGTGTTT
TCGTTGGGTCCGGAATCTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAA
GCAATGGCCGCTGCAGTAACCTACTACAACCAACCGGCTAAAATAGCAGA
ACTGAGTGAAGACCTGGGACCAGCCATGTCTGGGCCCACACATAGAGAAT
TGAAACACCATAAGACGGACACTAACCCTGGATTCAAAGTGACGTAGCTG
AAGCAGTCCGCCACGCTCGAACCATTCGTTCGCAGATCCGAAGAGCACAA
GGGATGGATAAATGCGAACTGCACACCTATGCTAAAGAACTCCGTGTACC
TTTCGACTTACTCCAGAAAACTGTAGAGATGGGACGGTTACCTGTCGTCA
ACTTTGCTGCTGGGGGACTTGTATTAACGCCAGCTGACGAAACGCATCAC
GTGGACAAAGAACCCTTCAAAATTCCTTTCGTATGTGGTGCACGTGATTT
AAGTGAAGCCTTGAGGAGAATCAGCGAAGGTGCTGCCATGATCAGAACTA
AAGGAGAAGCTGGCACTGATGATAAAAGAGATCATTGAAGCAGTCACCAT
TCCAGTTATGGCCAAATGTCGAATCGGTCACTTCGCCGAAGCACAAATCT
TGGAAACACTCGGCGTTGATATGATCGATGAATCTGAAGGCATGCGCAGT
AATGGCATTGGAAAGAGTGCCAGCGGATATCCGACGTGACGGTGGAGTGG
CAAGGATGTCAGATCCAAAGGTTCATTCAAGGTGAAAGCCGGTATGGCAC
AGATGGCGAAAGGAGGGATTGTCATGGATGTCACCAATGCTGCTGAAGCT
AGAGTTGCTGAAGAAGCTGGTATGAGGTTTCCAACCTATCCATCAAAGGA
CTGGGTGATATTCAACTCAAAACACCTCACATGACATCATCAACAGCTTC
CAAGACAGATGTCAACTGATACCAATGGACATGCTACAATAAGCTGTATC
TGTAGTCGAATAACCACACCAGCGGATGTTTCACTTCTCATGCAATTGGG
TGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGCTGAACCAG
AGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCTACTACAACCAACCG
GCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCAGCCATGTCTGGGCC
CACACATAGAGAATTGAAACACCATAAGACGGACACTAACCCTGGATTCA
AAGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTCGCAGA
TCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTATGCTAAA
GAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATGGGACG
GTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGTATTAACGCCAGCTG
ACGAAACGCATCACGTGGACAAAGAACCCTTCAAAATTCCTTTCGTATGT
GGTGCACGTGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAAGGTGCTGC
CATGATCAGAACTAAAGGAGAAGCTGGCACTGATGATAAAAGAGATCATT
GAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCACTTCGC
CGAAGCACAAATCTTGGAAACACTCGGCGTTGATATGATCGATGAATCTG
AAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGACG
TGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGTTCATTCAAGGTGAA
AGCCGGTATGGCACAGATGGCGAAAGGAGGGATTGTCATGGATGTCACCA
ATGCTGCTGAAGCTAGAGTTGCTGAAGAAGCTGGTATGAGGTTTCCAACC
TATCCATCAAAGGACTGGGTGATATTCAACTCAAAACACCTCACATGACA
TCATCAACAGCTTCCAAGACAGATGTCAACTGATACCAATGGACATGCTA
CAATAAGCTGTATCTGTAGTCGAATAACCACACCAGCGGATGTTTCACTT
CTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAA
GAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCT
ACTACAACCAACCGGCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCA
GCCATGTCTGGGCCCACACATAGAGAATTGAAACACCATAAGACGGACAC
TAACCCTGGATTCAAAGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAAC
CATTCGTTCGCAGATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGC
ACACCTATGCTAAAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACT
GTAGAGATGGGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGT
ATTAACGCCAGCTGACGAAACGCATCACGTGGACAAAGAACCCTTCAAAA
TTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGAGGAGAATC
AGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGCACTGATGA
TAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGA
ATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACACTCGGCGTTGATAT
GATCGATGAATCTGAAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCA
GCGGATATCCGACGTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGT
TCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGGGATTGT
CATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAGCTGGTA
TGAGGTTTCCAACCTATCCATCAAAGGACTGGGTGATATTCAACTCAAAA
CACCTCACATGACATCATCAACAGCTTCCAAGACAGATGTCAACTGATAC
CAATGGACATGCTACAATAAGCTGTATCTGTAGTCGAATAACCACACCAG
CGGATGTTTCACTTCTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGG
TCCGGAATCTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGC
CGCTGCAGTAACCTACTACAACCAACCGGCTAAAATAGCAGAACTGAGTG
AAGACCTGGGACCAGCCATGTCTGGGCCCACACATAGAGAATTGAAACAC
CATAAGACGGACACTAACCCTGGATTCAAAGTGACGTAGCTGAAGCAGTC
CGCCACGCTCGAACCATTCGTTCGCAGATCCGAAGAGCACAAGGGATGGA
TAAATGCGAACTGCACACCTATGCTAAAGAACTCCGTGTACCTTTCGACT
TACTCCAGAAAACTGTAGAGATGGGACGGTTACCTGTCGTCAACTTTGCT
GCTGGGGGACTTGTATTAACGCCAGCTGACGAAACGCATCACGTGGACAA
AGAACCCTTCAAAATTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAG
CCTTGAGGAGAATCAGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAA
GCTGGCACTGATGATAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTA
TGGCCAAATGTCGAATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACA
CTCGGCGTTGATATGATCGATGAATCTGAAGGCATGCGCAGTAATGGCAT
TGGAAAGAGTGCCAGCGGATATCCGACGTGACGGTGGAGTGGCAAGGATG
TCAGATCCAAAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCG
AAAGGAGGGATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGC
TGAAGAAGCTGGTATGAGGTTTCCAACCTATCCATCAAAGGACTGGGTGA
TATTCAACTCAAAACACCTCACATGACATCATCAACAGCTTCCAAGACAG
ATGTCAACTGATACCAATGGACATGCTACAATAAGCTGTATCTGTAGTCG
AATAACCACACCAGCGGATGTTTCACTTCTCATGCAATTGGGTGTCGATG
GTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGCTGAACCAGAGAAGCGT
GCTAAAGCAATGGCCGCTGCAGTAACCTACTACAACCAACCGGCTAAAAT
AGCAGAACTGAGTGAAGACCTGGGACCAGCCATGTCTGGGCCCACACATA
GAGAATTGAAACACCATAAGACGGACACTAACCCTGGATTCAAAGTGACG
TAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTCGCAGATCCGAAGA
GCACAAGGGATGGATAAATGCGAACTGCACACCTATGCTAAAGAACTCCG
TGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATGGGACGGTTACCTG
TCGTCAACTTTGCTGCTGGGGGACTTGTATTAACGCCAGCTGACGAAACG
CATCACGTGGACAAAGAACCCTTCAAAATTCCTTTCGTATGTGGTGCACG
TGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAAGGTGCTGCCATGATCA
GAACTAAAGGAGAAGCTGGCACTGATGATAAAAGAGATCATTGAAGCAGT
CACCATTCCAGTTATGGCCAAATGTCGAATCGGTCACTTCGCCGAAGCAC
AAATCTTGGAAACACTCGGCGTTGATATGATCGATGAATCTGAAGGCATG
CGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGACGTGACGGTG
GAGTGGCAAGGATGTCAGATCCAAAGGTTCATTCAAGGTGAAAGCCGGTA
TGGCACAGATGGCGAAAGGAGGGATTGTCATGGATGTCACCAATGCTGCT
GAAGCTAGAGTTGCTGAAGAAGCTGGTATGAGGTTTCCAACCTATCCATC
AAAGGACTGGGTGATATTCAACTCAAAACACCTCACATGACATCATCAAC
AGCTTCCAAGACAGATGTCAACTGATACCAATGGACATGCTACAATAAGC
TGTATCTGTAGTCGAATAACCACACCAGCGGATGTTTCACTTCTCATGCA
ATTGGGTGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGCTG
AACCAGAGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCTACTACAAC
CAACCGGCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCAGCCATGTC
TGGGCCCACACATAGAGAATTGAAACACCATAAGACGGACACTAACCCTG
GATTCAAAGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTT
CGCAGATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTAT
GCTAAAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGAT
GGGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGTATTAACGC
CAGCTGACGAAACGCATCACGTGGACAAAGAACCCTTCAAAATTCCTTTC
GTATGTGGTGCACGTGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAAGG
TGCTGCCATGATCAGAACTAAAGGAGAAGCTGGCACTGATGATAAAAGAG
ATCATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCA
CTTCGCCGAAGCACAAATCTTGGAAACACTCGGCGTTGATATGATCGATG
AATCTGAAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATAT
CCGACGTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGTTCATTCAA
GGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGGGATTGTCATGGATG
TCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAGCTGGTATGAGGTTT
CCAACCTATCCATCAAAGGACTGGGTGATATTCAACTCAAAACACCTCAC
ATGACATCATCAACAGCTTCCAAGACAGATGTCAACTGATACCAATGGAC
ATGCTACAATAAGCTGTATCTGTAGTCGAATAACCACACCAGCGGATGTT
TCACTTCTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCGGAAT
CTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCTGCAG
TAACCTACTACAACCAACCGGCTAAAATAGCAGAACTGAGTGAAGACCTG
GGACCAGCCATGTCTGGGCCCACACATAGAGAATTGAAACACCATAAGAC
GGACACTAACCCTGGATTCAAAGTGACGTAGCTGAAGCAGTCCGCCACGC
TCGAACCATTCGTTCGCAGATCCGAAGAGCACAAGGGATGGATAAATGCG
AACTGCACACCTATGCTAAAGAACTCCGTGTACCTTTCGACTTACTCCAG
AAAACTGTAGAGATGGGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGG
ACTTGTATTAACGCCAGCTGACGAAACGCATCACGTGGACAAAGAACCCT
TCAAAATTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGAGG
AGAATCAGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGCAC
TGATGATAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTATGGCCAAA
TGTCGAATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACACTCGGCGT
TGATATGATCGATGAATCTGAAGGCATGCGCAGTAATGGCATTGGAAAGA
GTGCCAGCGGATATCCGACGTGACGGTGGAGTGGCAAGGATGTCAGATCC
AAAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGG
GATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAG
CTGGTATGAGGTTTCCAACCTATCCATCAAAGGACTGGGTGATATTCAAC
TCAAAACACCTCACATGACATCATCAACAGCTTCCAAGACAGATGTCAAC
TGATACCAATGGACATGCTACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030868XLOC_030868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048552-proteinTCONS_00048552-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048552-exon-scaffold_143-1575043694:353131..353347TCONS_00048552-exon-scaffold_143-1575043694:353131..353347Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:352818..352904TCONS_00048552-exon-scaffold_143-1575043694:352818..352904Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:352331..352431TCONS_00048552-exon-scaffold_143-1575043694:352331..352431Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:351935..352015TCONS_00048552-exon-scaffold_143-1575043694:351935..352015Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:350518..350638TCONS_00048552-exon-scaffold_143-1575043694:350518..350638Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:350020..350166TCONS_00048552-exon-scaffold_143-1575043694:350020..350166Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:348808..348990TCONS_00048552-exon-scaffold_143-1575043694:348808..348990Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:348096..348334TCONS_00048552-exon-scaffold_143-1575043694:348096..348334Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1575043694:347694..348035TCONS_00048552-exon-scaffold_143-1575043694:347694..348035Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:353131..353347TCONS_00048552-exon-scaffold_143-1510915933:353131..353347Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:352818..352904TCONS_00048552-exon-scaffold_143-1510915933:352818..352904Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:352331..352431TCONS_00048552-exon-scaffold_143-1510915933:352331..352431Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:351935..352015TCONS_00048552-exon-scaffold_143-1510915933:351935..352015Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:350518..350638TCONS_00048552-exon-scaffold_143-1510915933:350518..350638Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:350020..350166TCONS_00048552-exon-scaffold_143-1510915933:350020..350166Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:348808..348990TCONS_00048552-exon-scaffold_143-1510915933:348808..348990Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:348096..348334TCONS_00048552-exon-scaffold_143-1510915933:348096..348334Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1510915933:347694..348035TCONS_00048552-exon-scaffold_143-1510915933:347694..348035Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:353131..353347TCONS_00048552-exon-scaffold_143-1491911889:353131..353347Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:352818..352904TCONS_00048552-exon-scaffold_143-1491911889:352818..352904Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:352331..352431TCONS_00048552-exon-scaffold_143-1491911889:352331..352431Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:351935..352015TCONS_00048552-exon-scaffold_143-1491911889:351935..352015Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:350518..350638TCONS_00048552-exon-scaffold_143-1491911889:350518..350638Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:350020..350166TCONS_00048552-exon-scaffold_143-1491911889:350020..350166Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:348808..348990TCONS_00048552-exon-scaffold_143-1491911889:348808..348990Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:348096..348334TCONS_00048552-exon-scaffold_143-1491911889:348096..348334Clytia hemisphaericaexon
TCONS_00048552-exon-scaffold_143-1491911889:347694..348035TCONS_00048552-exon-scaffold_143-1491911889:347694..348035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:347694..353347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
140.244	142.099	164.499	156.33	75.4663	58.7549	27.3472	28.1419	19.2368	18.2755	13.633	15.2708	11.9524	11.5554	20.6379	38.6964	50.3415	45.1073	10.8047	9.8828	46.9883	50.2993	63.6573	60.0362	21.0273	22.5563	34.7665	28.5425	141.582	112.007
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR033755PdxS/SNZ_N
IPR001852PdxS/SNZ
IPR011060RibuloseP-bd_barrel
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0042819vitamin B6 biosynthetic process
GO:0042823pyridoxal phosphate biosynthetic process
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0042823 pyridoxal phosphate biosynthetic process
biological_process GO:0042819 vitamin B6 biosynthetic process
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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