TCONS_00048573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048573
Unique NameTCONS_00048573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048573 ID=TCONS_00048573|Name=TCONS_00048573|organism=Clytia hemisphaerica|type=transcript|length=594bp
CAGAGAGACGCTATTCATGACTGTCGATTCAGGACACAAGTCAGCTGCAT
ATTCAACATGACGAGTCGCAAAATTCAATAGTTTCGGACAAAATTCATAA
CAAGTCTCTTGTTTTGCACGTCTCCTGGCCATAGCTtccaaatttctttc
ttttgcacctggcaaaaaatctaaattctcTCGTAGATTAGGTAGGTCTT
TACTTTGAGCTCTTGCCCTACAAAAGGCAACGTTAATAGCTTCCTTTGCT
TCGTTATTTTCGGCAGCAGCTTTGGTATATTTGTTGCGAAAATGCTCTCC
TTGACCAGTCATAATTTTCATGGCTTCGCTAGCTCTCACTACCATAGTCC
CCATATTAGTTAAAGACCTGTGTTTTCTCATACTCAATCCACTTAGAATA
CTTCGTTCATCTGATGTTAAGATTCTTCGATGCATTGAAGGGTATTTCTT
GTAAAGAGCACCTTTGTAGTAGTTCATAAATACACCGACATCACTTCCGA
GCATGAACTTTTCGCCATGCTCTTCCAAAAGATATATTGTTGGATATTTT
CCATTATAAATTTCTCTTGCCATTTTCCAATTCAATGCCAGGCA
Run BLAST on NCBI

protein sequence of TCONS_00048573-protein

>TCONS_00048573-protein ID=TCONS_00048573-protein|Name=TCONS_00048573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
CLALNWKMAREIYNGKYPTIYLLEEHGEKFMLGSDVGVFMNYYKGALYKK
YPSMHRRILTSDERSILSGLSMRKHRSLTNMGTMVVRASEAMKIMTGQGE
HFRNKYTKAAAENNEAKEAINVAFCRARAQSKDLPNLRENLDFLPGAKER
NLEAMARRRAKQETCYEFCPKLLNFATRHVEYAADLCPESTVMNSVSL
Run BLAST on NCBI

transcript from alignment at scaffold_143:154547..155140

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048573 ID=TCONS_00048573|Name=TCONS_00048573|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_143:154547..155140 (Clytia hemisphaerica)
TGCCTGGCATTGAATTGGAAAATGGCAAGAGAAATTTATAATGGAAAATA
TCCAACAATATATCTTTTGGAAGAGCATGGCGAAAAGTTCATGCTCGGAA
GTGATGTCGGTGTATTTATGAACTACTACAAAGGTGCTCTTTACAAGAAA
TACCCTTCAATGCATCGAAGAATCTTAACATCAGATGAACGAAGTATTCT
AAGTGGATTGAGTATGAGAAAACACAGGTCTTTAACTAATATGGGGACTA
TGGTAGTGAGAGCTAGCGAAGCCATGAAAATTATGACTGGTCAAGGAGAG
CATTTTCGCAACAAATATACCAAAGCTGCTGCCGAAAATAACGAAGCAAA
GGAAGCTATTAACGTTGCCTTTTGTAGGGCAAGAGCTCAAAGTAAAGACC
TACCTAATCTACGAgagaatttagattttttgccaggtgcaaaagaaaga
aatttggaAGCTATGGCCAGGAGACGTGCAAAACAAGAGACTTGTTATGA
ATTTTGTCCGAAACTATTGAATTTTGCGACTCGTCATGTTGAATATGCAG
CTGACTTGTGTCCTGAATCGACAGTCATGAATAGCGTCTCTCTG

Coding sequence (CDS) from alignment at scaffold_143:154547..155140

>TCONS_00048573 ID=TCONS_00048573|Name=TCONS_00048573|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_143:154547..155140 (Clytia hemisphaerica)
TGCCTGGCATTGAATTGGAAAATGGCAAGAGAAATTTATAATGGAAAATA
TCCAACAATATATCTTTTGGAAGAGCATGGCGAAAAGTTCATGCTCGGAA
GTGATGTCGGTGTATTTATGAACTACTACAAAGGTGCTCTTTACAAGAAA
TACCCTTCAATGCATCGAAGAATCTTAACATCAGATGAACGAAGTATTCT
AAGTGGATTGAGTATGAGAAAACACAGGTCTTTAACTAATATGGGGACTA
TGGTAGTGAGAGCTAGCGAAGCCATGAAAATTATGACTGGTCAAGGAGAG
CATTTTCGCAACAAATATACCAAAGCTGCTGCCGAAAATAACGAAGCAAA
GGAAGCTATTAACGTTGCCTTTTGTAGGGCAAGAGCTCAAAGTAAAGACC
TACCTAATCTACGAgagaatttagattttttgccaggtgcaaaagaaaga
aatttggaAGCTATGGCCAGGAGACGTGCAAAACAAGAGACTTGTTATGA
ATTTTGTCCGAAACTATTGAATTTTGCGACTCGTCATGTTGAATATGCAG
CTGACTTGTGTCCTGAATCGACAGTCATGAATAGCGTCTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030884XLOC_030884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048573-exon-scaffold_143-1491911889:154547..155140TCONS_00048573-exon-scaffold_143-1491911889:154547..155140Clytia hemisphaericaexon
TCONS_00048573-exon-scaffold_143-1510915933:154547..155140TCONS_00048573-exon-scaffold_143-1510915933:154547..155140Clytia hemisphaericaexon
TCONS_00048573-exon-scaffold_143-1575043694:154547..155140TCONS_00048573-exon-scaffold_143-1575043694:154547..155140Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048573-proteinTCONS_00048573-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:154547..155140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.7372	0.539164	1.04337	0.612464	0	0	0	0.110913	0.077653	0	0	0	0	0	0	0.112307	0	0.212711	0	0	0.534575	0.521494	0.105657	0.0960579	59.6592	50.0657	0.63178	0.943953	0.102279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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