TCONS_00048571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048571
Unique NameTCONS_00048571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048571 ID=TCONS_00048571|Name=TCONS_00048571|organism=Clytia hemisphaerica|type=transcript|length=1269bp
aatttgtattttttagaGAGAAAACACAAtgtcagaaaacagaaaaagaa
agaagGCATTTTATAAAGGAAAATATGGTGGAAAGAAAGGCAAATACCAA
AATGATTTACGGCCAAAACTCAAAGGGTTTATCATCACTGTCAATGGGCA
GGAGAAAAATGCTAGAGGTGAAGCTTACAGGCTTTTGAACGAATATGCTG
ATAAGAGGTATGGGCCTGAACAATTGGATGAGGCTGGAAAGGAGTCTGGG
GATGAAAATGAGCAAGATATTGAAGCATCTTTGAAGCAGGAAGTGTCCAA
CATCAAAGCCGCCAAAGATAAAGACCGCAGATTTCAAATCATCCAAAACA
AAGCCAAAAATGTGTTATTTGTGAAAGCAGATATTGAAGATCCGAATCAG
TTAGCTTTGGACATTTTTGCAGATTTATCAGCAAATGGTGTTGCAAAAAC
TAGACATTGTTGCCGTTTGCTACCAGTGATTGATACCTGTTATGCCAAAT
TAAATCATATCGTGGAAGCTGCTAAGCCTATCCTGAAAACATTATTTACA
GAGTCTCAAACACCTTTCTCAACTTACTGCATGACATGGAAAGTAAGGTG
CAATGATACTTTAAAACGTGATGAGGTTTATGGAGAGTTGTTGGAATATA
TTAAACAGTTTGAGGGTGATTATGAAGCCTGTTACATCGACCCTGATGTT
GTTATTGATATGAATATCATTGGCAATATCTGTTGTTTTGGTGTTTTACG
AAAATGGAACCAGTATTCTAAATATAATTTGGATGCTATCATTAAAAAAG
TGAATAAAGAGGTTGGTGGTGGAGATCAGGCTGATGTTGGAGAGGATAAG
GCTAAAAATGTAGAGACTGAAGCTAAGGCTAGTGAGGAAAACGTTCAGTC
TATAGATGCAAAGAGTGAAACTGGAGCAGAGTCTAAAAGTGATAATGCTG
AAACTGAGGCTAAAGCAGAAAATGACCAGCCCGTGACGGTAACTGACGAT
GGCTCTTCATATTCTGAGGTGAAGCAAGTTGAAAATGTTACGAATGACGA
ATCTTCCAAAGAGGCTATTGctcaagaaactgaaaaaaagaatgaacttA
ATGAAGGAAAACATGAAGTTTGAATTTACCCTaacatgatttttaaaaaa
cttttttaacatcTTTAGTATTTTTATAATTTAGTCCCAAGATAGctcaa
aaaaaagaatattcCCATCGTGGTTTGGGTtaatgaaattttcttattcT
TCTCTTCCAATTTATGTAG
Run BLAST on NCBI

protein sequence of TCONS_00048571-protein

>TCONS_00048571-protein ID=TCONS_00048571-protein|Name=TCONS_00048571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MSENRKRKKAFYKGKYGGKKGKYQNDLRPKLKGFIITVNGQEKNARGEAY
RLLNEYADKRYGPEQLDEAGKESGDENEQDIEASLKQEVSNIKAAKDKDR
RFQIIQNKAKNVLFVKADIEDPNQLALDIFADLSANGVAKTRHCCRLLPV
IDTCYAKLNHIVEAAKPILKTLFTESQTPFSTYCMTWKVRCNDTLKRDEV
YGELLEYIKQFEGDYEACYIDPDVVIDMNIIGNICCFGVLRKWNQYSKYN
LDAIIKKVNKEVGGGDQADVGEDKAKNVETEAKASEENVQSIDAKSETGA
ESKSDNAETEAKAENDQPVTVTDDGSSYSEVKQVENVTNDESSKEAIAQE
TEKKNELNEGKHEV
Run BLAST on NCBI

transcript from alignment at scaffold_143:83041..84309

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048571 ID=TCONS_00048571|Name=TCONS_00048571|organism=Clytia hemisphaerica|type=transcript|length=1269bp|location=Sequence derived from alignment at scaffold_143:83041..84309 (Clytia hemisphaerica)
CTACATAAATTGGAAGAGAAgaataagaaaatttcattaACCCAAACCAC
GATGGgaatattcttttttttgagCTATCTTGGGACTAAATTATAAAAAT
ACTAAAgatgttaaaaaagttttttaaaaatcatgttAGGGTAAATTCAA
ACTTCATGTTTTCCTTCATTaagttcattctttttttcagtttcttgagC
AATAGCCTCTTTGGAAGATTCGTCATTCGTAACATTTTCAACTTGCTTCA
CCTCAGAATATGAAGAGCCATCGTCAGTTACCGTCACGGGCTGGTCATTT
TCTGCTTTAGCCTCAGTTTCAGCATTATCACTTTTAGACTCTGCTCCAGT
TTCACTCTTTGCATCTATAGACTGAACGTTTTCCTCACTAGCCTTAGCTT
CAGTCTCTACATTTTTAGCCTTATCCTCTCCAACATCAGCCTGATCTCCA
CCACCAACCTCTTTATTCACTTTTTTAATGATAGCATCCAAATTATATTT
AGAATACTGGTTCCATTTTCGTAAAACACCAAAACAACAGATATTGCCAA
TGATATTCATATCAATAACAACATCAGGGTCGATGTAACAGGCTTCATAA
TCACCCTCAAACTGTTTAATATATTCCAACAACTCTCCATAAACCTCATC
ACGTTTTAAAGTATCATTGCACCTTACTTTCCATGTCATGCAGTAAGTTG
AGAAAGGTGTTTGAGACTCTGTAAATAATGTTTTCAGGATAGGCTTAGCA
GCTTCCACGATATGATTTAATTTGGCATAACAGGTATCAATCACTGGTAG
CAAACGGCAACAATGTCTAGTTTTTGCAACACCATTTGCTGATAAATCTG
CAAAAATGTCCAAAGCTAACTGATTCGGATCTTCAATATCTGCTTTCACA
AATAACACATTTTTGGCTTTGTTTTGGATGATTTGAAATCTGCGGTCTTT
ATCTTTGGCGGCTTTGATGTTGGACACTTCCTGCTTCAAAGATGCTTCAA
TATCTTGCTCATTTTCATCCCCAGACTCCTTTCCAGCCTCATCCAATTGT
TCAGGCCCATACCTCTTATCAGCATATTCGTTCAAAAGCCTGTAAGCTTC
ACCTCTAGCATTTTTCTCCTGCCCATTGACAGTGATGATAAACCCTTTGA
GTTTTGGCCGTAAATCATTTTGGTATTTGCCTTTCTTTCCACCATATTTT
CCTTTATAAAATGCcttctttctttttctgttttctgacaTTGTGTTTTC
TCtctaaaaaatacaaatt

Coding sequence (CDS) from alignment at scaffold_143:83041..84309

>TCONS_00048571 ID=TCONS_00048571|Name=TCONS_00048571|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_143:83041..84309 (Clytia hemisphaerica)
TCAAACTTCATGTTTTCCTTCATTaagttcattctttttttcagtttctt
gagCAATAGCCTCTTTGGAAGATTCGTCATTCGTAACATTTTCAACTTGC
TTCACCTCAGAATATGAAGAGCCATCGTCAGTTACCGTCACGGGCTGGTC
ATTTTCTGCTTTAGCCTCAGTTTCAGCATTATCACTTTTAGACTCTGCTC
CAGTTTCACTCTTTGCATCTATAGACTGAACGTTTTCCTCACTAGCCTTA
GCTTCAGTCTCTACATTTTTAGCCTTATCCTCTCCAACATCAGCCTGATC
TCCACCACCAACCTCTTTATTCACTTTTTTAATGATAGCATCCAAATTAT
ATTTAGAATACTGGTTCCATTTTCGTAAAACACCAAAACAACAGATATTG
CCAATGATATTCATATCAATAACAACATCAGGGTCGATGTAACAGGCTTC
ATAATCACCCTCAAACTGTTTAATATATTCCAACAACTCTCCATAAACCT
CATCACGTTTTAAAGTATCATTGCACCTTACTTTCCATGTCATGCAGTAA
GTTGAGAAAGGTGTTTGAGACTCTGTAAATAATGTTTTCAGGATAGGCTT
AGCAGCTTCCACGATATGATTTAATTTGGCATAACAGGTATCAATCACTG
GTAGCAAACGGCAACAATGTCTAGTTTTTGCAACACCATTTGCTGATAAA
TCTGCAAAAATGTCCAAAGCTAACTGATTCGGATCTTCAATATCTGCTTT
CACAAATAACACATTTTTGGCTTTGTTTTGGATGATTTGAAATCTGCGGT
CTTTATCTTTGGCGGCTTTGATGTTGGACACTTCCTGCTTCAAAGATGCT
TCAATATCTTGCTCATTTTCATCCCCAGACTCCTTTCCAGCCTCATCCAA
TTGTTCAGGCCCATACCTCTTATCAGCATATTCGTTCAAAAGCCTGTAAG
CTTCACCTCTAGCATTTTTCTCCTGCCCATTGACAGTGATGATAAACCCT
TTGAGTTTTGGCCGTAAATCATTTTGGTATTTGCCTTTCTTTCCACCATA
TTTTCCTTTATAAAATGCcttctttctttttctgttttctgacaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030882XLOC_030882Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048571-proteinTCONS_00048571-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048571-exon-scaffold_143-1491911889:83041..84309TCONS_00048571-exon-scaffold_143-1491911889:83041..84309Clytia hemisphaericaexon
TCONS_00048571-exon-scaffold_143-1510915933:83041..84309TCONS_00048571-exon-scaffold_143-1510915933:83041..84309Clytia hemisphaericaexon
TCONS_00048571-exon-scaffold_143-1575043694:83041..84309TCONS_00048571-exon-scaffold_143-1575043694:83041..84309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:83041..84309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3063	30.4187	8.33711	5.41299	34.303	26.4647	31.5843	35.4504	24.2838	22.149	16.8189	13.9316	13.0441	16.7597	20.0124	20.3954	26.7335	22.3534	4.62526	6.25477	18.3806	15.3423	75.2928	55.9619	19.1892	24.406	12.483	11.2651	53.6426	58.3625
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00048571 vs. Swiss-Prot (Human)
Match: THUM1 (THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.069e-36
Identity = 85/253 (33.60%), Postives = 135/253 (53.36%), Query Frame = 2 
Query:  107 LRPKLKGFIITVNGQEKNARGEAYRLLNEYADKRYGPEQL-DEAGKESGDENE-QDIEASLKQEVSNIKAAKD-KDRRFQIIQNKAKNVLFVKADIEDPNQLALDIFADLSANGVAKTRHCCRLLPVIDTCYAKLNHIVEAAKPILKTLFTESQTPFSTYCMTWKVRCNDTLKRDEVYGELLEYIKQFEGDYEACYIDPDVVIDMNIIGNICCFGVLRKWNQYSKYNLDAIIK------KVNKEVGGGDQADV 838
            L P L+G +IT N  E+    EAY LLNEY D  YGPE+  D+  + SG E E  D EA+LK+EV +IKA+ + + RRFQ +++ A NV+F++    +P +L   I  D+      KTR   R+LP+  TC A L  + + A+  L+  F        T+ + +K R N  + R+EV  EL   +     + +    +P   + + II  +CC  V++ +  + KYNL  ++K      ++N + G G +A +
Sbjct:   39 LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNK--GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKL 289
The following BLAST results are available for this feature:
BLAST of TCONS_00048571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THUM14.069e-3633.60THUMP domain-containing protein 1 OS=Homo sapiens ... [more]
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