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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048385 ID=TCONS_00048385|Name=TCONS_00048385|organism=Clytia hemisphaerica|type=transcript|length=1771bp
TGAATGGatacaaagaaaattattaatataTTCATCCACTCAAGATCGTC
AACATGGACAAAAAATGGCTTCAAAATCGCCGTCAAACGACTTCAACATT
TATTCTCATGAACATTTCTCTTGGAATTGAACAGTCAATCACATTCGCTT
CATTATTCATCTACCTCAAAGATGTCTTACACGtctctggtaatcgtttg
accACATTCTACAGCGCTATATCGGGAATTTATTTCCTATCTCAAATCAT
ATCGTCATTGGCGTTAACCAGAATCTTTGATAAATATCGTCGACTTAAGT
TAACTTTCTTCATTGTTAACAACTTCACCATTGCTGGTAATGCACTGTAC
ACACTTCCATATTCACCCTGGTGTTTACTGGCTGGTCGTCTCATCTCTGG
TGTTGCAGGATGCATCAAACCAATCATGGTATCCGAATTGACCAGATCAT
TCCCAAAAGATGAGCTTTTACCACAAATATCTAGATTCGCATTTGCTTTT
TCAGTTGGTTTCACTTTAGGaccttttgttaattttgtattCCTCAAAGC
TGATTTCCAATTCTTAGGTATACCAATCACTTATGCTAATGGTGCTGGTT
TATTGATAACTTTCTTATTCATCTTGATGCAGATTCTAACTGTGTTTTTC
GTTACCGACTTGTCAAGAGAATTCGACCTAAAAAAATCGCATAAAGAAAG
TCAAATACTGGAGAAAGAAAGACTTTTAGAAACACAATCactaaatgaaa
aagaaaagattgatcTAGATTTAGGGAATTCAGGATTCGATTCCAAGGAG
GAACTAACCCTAATTGAGGATACTTCTGATGGTCAGCCCTGTCAACCGAC
ACTAGATCTGGATAATGAGAATCATGATGATGTATCTGCACCAATGTTAC
CAAGGGAACCAGACAAGAGTATCCAAAATTCATTATGGACATTATTTACA
AGCATAGATGTTGTgctcatttttatattttcattttttgttttctttga
attGATAACTTATGATTCTTGGATTCCAATGTTATGTACAGAAATTTTAC
ATTGGGGAATTGTAGAGATTAACTTAATCTTTCTTGGTAATGGCATCGCT
GTTGGTATCATTTATCTTGCATGTTATTTCAGACCACCAGCAAAAGAACA
GTTCTATACTCAGGCTGTATATTCGTTTGTAGCTGGTGTTTGTCTGTACG
CAGTCTTCTTATATTTCTCCCTTGGTATCGAAATTACTTGGTTGAATGTC
TTATtatggtttgtttatattttcctAGTTGCTGTTATGATTGTacttga
aagattgtttttgATGAACACTCTAGTACAAATGGTACCGTCCGAAATTC
AAGCTTTTACTGAAGGTATCCGATTATCGTTTTCTCGGACAGGAGCTGCA
ATAGGGCTGTTTACTGCAGCTTTTTCTTTTgggattttgttttatttttg
tgctGTTTGTATGCTGGTAACTATGGTTTTGTTGGCACTTCTAATATGGA
GAAAGAAACATTTTCAGAATCCTAAAATgattaatttttataaaatagtg
tAATTATCAACgtagttttctttttataaattagAAACATAAAAATAACT
TGTTTTGGTCCAGTTaatctttttttgtatttttccctACCAATGCCGCA
TAAATTTAATTTAACACGTTTgctgttgggtccatgatgtagtCAAAAGA
CATTGCACTGCAGTGGTGCACATCATGTAGATCAGTGAAAAAAGGCAAGG
GTGCTAGGGAAGCATAAGGCG Run BLAST on NCBI protein sequence of TCONS_00048385-protein >TCONS_00048385-protein ID=TCONS_00048385-protein|Name=TCONS_00048385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
MDKKWLQNRRQTTSTFILMNISLGIEQSITFASLFIYLKDVLHVSGNRLT
TFYSAISGIYFLSQIISSLALTRIFDKYRRLKLTFFIVNNFTIAGNALYT
LPYSPWCLLAGRLISGVAGCIKPIMVSELTRSFPKDELLPQISRFAFAFS
VGFTLGPFVNFVFLKADFQFLGIPITYANGAGLLITFLFILMQILTVFFV
TDLSREFDLKKSHKESQILEKERLLETQSLNEKEKIDLDLGNSGFDSKEE
LTLIEDTSDGQPCQPTLDLDNENHDDVSAPMLPREPDKSIQNSLWTLFTS
IDVVLIFIFSFFVFFELITYDSWIPMLCTEILHWGIVEINLIFLGNGIAV
GIIYLACYFRPPAKEQFYTQAVYSFVAGVCLYAVFLYFSLGIEITWLNVL
LWFVYIFLVAVMIVLERLFLMNTLVQMVPSEIQAFTEGIRLSFSRTGAAI
GLFTAAFSFGILFYFCAVCMLVTMVLLALLIWRKKHFQNPKMINFYKIV Run BLAST on NCBI transcript from alignment at scaffold_142:589909..593952- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048385 ID=TCONS_00048385|Name=TCONS_00048385|organism=Clytia hemisphaerica|type=transcript|length=4044bp|location=Sequence derived from alignment at scaffold_142:589909..593952- (Clytia hemisphaerica)
TGAATGGATACAAAGAAAATTATTAATATATTCATCCACTCAAGATCGTC
AAATTGTGTAAGAAAAAACCATGGACAAAAACTGGCTTCAAAATCGCCGT
CAAACGACTTCAACATTTATTCTCATGAACATTTCTCTTGGAATTGAACA
GTCAATCACATTCGCTTCATTATTCATCTACCTCAAAGATGTCTTACACG
TCTCTGGTAATCGTTTGACCACATTCTACAGCGCTATATCGGGAATTTAT
TTCCTATCTCAAATCATATCGTCATTGGCGTTAACCAGAATCTTTGATAA
ATATCGTCGACTTAAGTTAACTTTCTTCATTGTTAACAACTTCACCATTG
CTGGTAATGCACTGTACACACTTCCATATTCACCCTGGTGTTTACTGGCT
GGTCGTCTCATCTCTGGTGTTGCAGGATGCATCAAACCAATCATGGTATC
CGAATTGACCAGATCATTTCCTAAAGATGAGCTTTTACCACAAATATCTA
GATTCGCATTTGCTTTTTCAGTTGGTTTCACTTTAGGACCTTTTGTTAAT
TTTGTATTCCTCAAAGCTGATTTCCGATTCTTAGGTATACCAATCACTTA
TGCTAATGGTGCTGGTTTATTGATAACTTTCTTATTCATCTTGATGCAGA
TTCTAACTGTGTTTTTCGTTACCGACTTGTCAAGAGAATTCGACCTAAAA
AAATCGCATAAAGAAAGTCAAATACTGGAGAAAGAAAGACTTTTAGAAAC
ACAATCACTAAATGAAAAAGAAAAGATTGATCTAGATTTAGGGAATTCAG
GATTCGATTCCAAGGAGGAACTAACCCTAATTGAGGATACTTCTGATGGT
CAGCCCTGTCAACCGACACTAGATCTGGATAATGAGAATCATGATGATGT
ATCTGCACCAATGTTACCAAGGGAACCAGACAAGAGTATCCGAAATTCAT
TATGGACATTATTTACAAGCATAGATGTTGTGCTCATTTTTATATTTTCA
TTTTTTGTTTTCTTTGAATTGATAACTTATGATTCTTGGATTCCAATGTT
ATGTACAGAAATTTTACATTGGGGAATTGTAGAGATTAACTTAATCTTTC
TTGGTAATAGTATTGCTGTTGGTATCATTTATCTTGCGTGTTATTTCAGA
CCACCAGCAAAAGAACAGTTCTATACTCTGGCTGTATATTCGTTTGTAGC
TGGTGTTTGTCTGTATGCAATCTTTTTGTATTTCTCCCTTGGTATCAAAG
TTACTTGGTTAAATATCTTGTTTTGGTTTCTTTACATTTTGTTTTTTGCT
GTTATGATTGTACTGGAGAGATTGTTCCTGGTGAACACTTTAATACAAAT
GGTACCGTCCGAAATTCAAGCTTTTACTGAAGGTATCCGTTCATCGTTTT
CTCGGACAGGAGCCGCTGTAGGGCTGTTTACTGCAGCTTTTTCTTTTGGG
ATTTTGTCTTATGTTTGTGCTGTTTGTATGCTGGTAACTATGGTTTTGTT
GGCACTTCTAATATGGAGAAAGAAACATTTTCAGAATCCTAAAATTATTA
ATTTTTATAAAATAGTGTAATTATCAACGTAGTTTTCTTTTCGTAAAAAG
GAACAATCAAACTTCTTTGAAAAAAGAATAGTTGTTTTGGTTCATGCCCA
GGTCGCAGTATTTTACACTGTCTACCTACCCTATCAACGCCACACAAATT
TAATTTGAAAATTTAATTCGCTCTATAAAGTGTATACTGAGTTTATCGTT
CTACATCTGCGATCTTGAGCTTTATTAAGCTCATTTGACGTCAACCGATA
CATTTGTATACTTTAATCAGCAGTCGGTTTGAGAGGGAGAGAGTGGTATA
TCAGTGAAAAAAGGTAGGGTGGTAGGGAAGTATAAGGTGATAGACTCTTC
TAAAAGGCTTGTTTATTGGTCTATTATTTCTGTAATGTAAAGTTGAACTT
TGACATTCCAATAATATTTTTCAAAGACAAAGTTCTTCCACGTTGTATAG
ACGACAAAAATTTTTATTTGTTTTGGTATATCACCAATGAATCATGAATT
CGTTCGGTTTATGTAATTGGAAATAAAATCTATATACAGATTTTGATAAT
GTACCATTCCAAAACAAAGCACTAGTAAACACTAGATAGCGGCGCAAATA
TGCTTTTCCTCGGAAAAGATTGAAAATCCTCCTCCTCCAGCCCTTTAGGT
TATGAACTGTATGAATAATACCTTAAGTGAATTCAATTATTTTTTCATTT
TAGTGTTGAATGGATACAAAGAAAATTATTAATATATTCATCCACTCAAG
ATCGTCAAATTGTGTAAGAAAAAACCATGGACAAAAAATGGCTTCAAAAT
CGCCGTCAAACGACTTCAACATTTATTCTCATGAACATTTCTCTTGGAAT
TGAACAGTCAATCACATTCGCTTCATTATTCATCTACCTCAAAGATGTCT
TACACGTCTCTGGTAATCGTTTGACCACATTCTACAGCGCTATATCGGGA
ATTTATTTCCTATCTCAAATCATATCGTCATTGGCGTTAACCAGAATCTT
TGATAAATATCGTCGACTTAAGTTAACTTTCTTCATTGTTAACAACTTCA
CCATTGCTGGTAATGCACTGTACACACTTCCATATTCACCCTGGTGTTTA
CTGGCTGGTCGTCTCATCTCTGGTGTTGCAGGATGCATCAAACCAATCAT
GGTATCCGAATTGACCAGATCATTCCCAAAAGATGAGCTTTTACCACAAA
TATCTAGATTCGCATTTGCTTTTTCAGTTGGTTTCACTTTAGGACCTTTT
GTTAATTTTGTATTCCTCAAAGCTGATTTCCAATTCTTAGGTATACCAAT
CACTTATGCTAATGGTGCTGGTTTATTGATAACTTTCTTATTCATCTTGA
TGCAGATTCTAACTGTGTTTTTCGTTACCGACTTGTCAAGAGAATTCGAC
CTAAAAAAATCGCATAAAGAAAGTCAAATACTGGAGAAAGAAAGACTTTT
AGAAACACAATCACTAAATGAAAAAGAAAAGATTGATCTAGATTTAGGGA
ATTCAGGATTCGATTCCAAGGAGGAACTAACCCTAATTGAGGATACTTCT
GATGGTCAGCCCTGTCAACCGACACTAGATCTGGATAATGAGAATCATGA
TGATGTATCTGCACCAATGTTACCAAGGGAACCAGACAAGAGTATCCAAA
ATTCATTATGGACATTATTTACAAGCATAGATGTTGTGCTCATTTTTATA
TTTTCATTTTTTGTTTTCTTTGAATTGATAACTTATGATTCTTGGATTCC
AATGTTATGTACAGAAATTTTACATTGGGGAATTGTAGAGATTAACTTAA
TCTTTCTTGGTAATGGCATCGCTGTTGGTATCATTTATCTTGCATGTTAT
TTCAGACCACCAGCAAAAGAACAGTTCTATACTCAGGCTGTATATTCGTT
TGTAGCTGGTGTTTGTCTGTACGCAGTCTTCTTATATTTCTCCCTTGGTA
TCGAAATTACTTGGTTGAATGTCTTATTATGGTTTGTTTATATTTTCCTA
GTTGCTGTTATGATTGTACTTGAAAGATTGTTTTTGATGAACACTCTAGT
ACAAATGGTACCGTCCGAAATTCAAGCTTTTACTGAAGGTATCCGATTAT
CGTTTTCTCGGACAGGAGCTGCAATAGGGCTGTTTACTGCAGCTTTTTCT
TTTGGGATTTTGTTTTATTTTTGTGCTGTTTGTATGCTGGTAACTATGGT
TTTGTTGGCACTTCTAATATGGAGAAAGAAACATTTTCAGAATCCTAAAA
TGATTAATTTTTATAAAATAGTGTAATTATCAACGTAGTTTTCTTTTTAT
AAATTAGAAACATAAAAATAACTTGTTTTGGTCCAGTTAATCTTTTTTTG
TATTTTTCCCTACCAATGCCGCATAAATTTAATTTAACACGTTTGCTGTT
GGGTCCATGATGTAGTCAAAAGACATTGCACTGCAGTGGTGCACATCATG
TAGATCAGTGAAAAAAGGCAAGGGTGCTAGGGAAGCATAAGGCG Coding sequence (CDS) from alignment at scaffold_142:589909..593952- >TCONS_00048385 ID=TCONS_00048385|Name=TCONS_00048385|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_142:589909..593952- (Clytia hemisphaerica)
ATGGACAAAAAATGGCTTCAAAATCGCCGTCAAACGACTTCAACATTTAT
TCTCATGAACATTTCTCTTGGAATTGAACAGTCAATCACATTCGCTTCAT
TATTCATCTACCTCAAAGATGTCTTACACGTCTCTGGTAATCGTTTGACC
ACATTCTACAGCGCTATATCGGGAATTTATTTCCTATCTCAAATCATATC
GTCATTGGCGTTAACCAGAATCTTTGATAAATATCGTCGACTTAAGTTAA
CTTTCTTCATTGTTAACAACTTCACCATTGCTGGTAATGCACTGTACACA
CTTCCATATTCACCCTGGTGTTTACTGGCTGGTCGTCTCATCTCTGGTGT
TGCAGGATGCATCAAACCAATCATGGTATCCGAATTGACCAGATCATTCC
CAAAAGATGAGCTTTTACCACAAATATCTAGATTCGCATTTGCTTTTTCA
GTTGGTTTCACTTTAGGACCTTTTGTTAATTTTGTATTCCTCAAAGCTGA
TTTCCAATTCTTAGGTATACCAATCACTTATGCTAATGGTGCTGGTTTAT
TGATAACTTTCTTATTCATCTTGATGCAGATTCTAACTGTGTTTTTCGTT
ACCGACTTGTCAAGAGAATTCGACCTAAAAAAATCGCATAAAGAAAGTCA
AATACTGGAGAAAGAAAGACTTTTAGAAACACAATCACTAAATGAAAAAG
AAAAGATTGATCTAGATTTAGGGAATTCAGGATTCGATTCCAAGGAGGAA
CTAACCCTAATTGAGGATACTTCTGATGGTCAGCCCTGTCAACCGACACT
AGATCTGGATAATGAGAATCATGATGATGTATCTGCACCAATGTTACCAA
GGGAACCAGACAAGAGTATCCAAAATTCATTATGGACATTATTTACAAGC
ATAGATGTTGTGCTCATTTTTATATTTTCATTTTTTGTTTTCTTTGAATT
GATAACTTATGATTCTTGGATTCCAATGTTATGTACAGAAATTTTACATT
GGGGAATTGTAGAGATTAACTTAATCTTTCTTGGTAATGGCATCGCTGTT
GGTATCATTTATCTTGCATGTTATTTCAGACCACCAGCAAAAGAACAGTT
CTATACTCAGGCTGTATATTCGTTTGTAGCTGGTGTTTGTCTGTACGCAG
TCTTCTTATATTTCTCCCTTGGTATCGAAATTACTTGGTTGAATGTCTTA
TTATGGTTTGTTTATATTTTCCTAGTTGCTGTTATGATTGTACTTGAAAG
ATTGTTTTTGATGAACACTCTAGTACAAATGGTACCGTCCGAAATTCAAG
CTTTTACTGAAGGTATCCGATTATCGTTTTCTCGGACAGGAGCTGCAATA
GGGCTGTTTACTGCAGCTTTTTCTTTTGGGATTTTGTTTTATTTTTGTGC
TGTTTGTATGCTGGTAACTATGGTTTTGTTGGCACTTCTAATATGGAGAA
AGAAACATTTTCAGAATCCTAAAATGATTAATTTTTATAAAATAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00048385-exon-scaffold_142-1575043694:593901..593952 | TCONS_00048385-exon-scaffold_142-1575043694:593901..593952 | Clytia hemisphaerica | exon |
| TCONS_00048385-exon-scaffold_142-1575043694:589909..591627 | TCONS_00048385-exon-scaffold_142-1575043694:589909..591627 | Clytia hemisphaerica | exon |
| TCONS_00048385-exon-scaffold_142-1510915933:593901..593952 | TCONS_00048385-exon-scaffold_142-1510915933:593901..593952 | Clytia hemisphaerica | exon |
| TCONS_00048385-exon-scaffold_142-1510915933:589909..591627 | TCONS_00048385-exon-scaffold_142-1510915933:589909..591627 | Clytia hemisphaerica | exon |
| TCONS_00048385-exon-scaffold_142-1491911889:593901..593952 | TCONS_00048385-exon-scaffold_142-1491911889:593901..593952 | Clytia hemisphaerica | exon |
| TCONS_00048385-exon-scaffold_142-1491911889:589909..591627 | TCONS_00048385-exon-scaffold_142-1491911889:589909..591627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:589909..593952 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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