|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048374 ID=TCONS_00048374|Name=TCONS_00048374|organism=Clytia hemisphaerica|type=transcript|length=1377bp
ACAAGGCACTGTACTGGTTGTTACAGAGTACAAGCGCATTTTGTGAAAAG
Tctgaaaatttgcgaaaatctataagtgcatttaaaaaatatctttgaag
agGGCTGGTACCGATAGAAAATATAATCATGCTTTTCGTCATCTTTGCCA
CTTGTTGCCTAGCAACCACAAATGCCAAATCCCTTGTACCTTCATCCAAT
GTATGGCCTTCTCTTGAACAACAACCTGGTATTGGATATCGGTATGGTAG
TGTGCAGCCATTATGGATGACGCATGTTGGATTGACCAAAGTTCGCGGGA
ATGGCGCTGCCAAGAGTAAAGATATACCAACCGTCTATTGGAGGGTTGGT
GACGACTCTACTAAGCCTAACAATTTGTTCTTCAAAGATTCAATCCCGCC
CTTTTTTCatttccttcaaaaaacaaaaagcgCCATGGACGAGAGGGATG
AACGACGAATCCCGTTATATATTGACGATGAATCCGATTTTGGCAATAAT
CAAGAGTCGGACAATATCGGCGAATCCGTTTCGGTAAACACCAACCAAGA
AAGAAGATCTGGGCAACATGAAAACCAACAGAAAGTCGATATCTTGCGCA
AGATAATTGAAGAACGTGAATCAAGGGTGGCGGGCGTAAACATGGATGAG
GCGGACAAGAGAGCTATTCGTACCTATACTTACAGTTCGCATCGTTTACG
TCAACTTTTGCGAAATTATTTGAAATCATTGAGTAagttaaataagaaca
aaaatgaACCAAGACAAGCGCCGGCTGATAATAATGGAGTAGCTGAGCAA
GATGGTATCTGGGGTCGCTAAAGACTCATTTTCTTAGTTCGAATTTCATC
AAAGCTTTGCACTGAACTACTGATTTAGACTCTCTGAGATCTCTAAAAAA
AACACATCATTCTAGCTTATGGCCAACACTATATATTGTACATTCTATAT
AAAGACAAAAACGGCCCTTTTCAATCCAtgttacagtggagtctctttaa
ctcaaacGTTTATTGAACGTCTTCTTAACGTTTATTGAACGTCTTCTTAA
CGTTTATTGAAcgtcttcttaactcgaacaagttaaaaatgccttataaa
ccttgctccatatttcgaaatttctcaaacaaatttatgtctTCTTTTAT
GCGTGTTCGatttatggagactccactgtatatatTATAAGCCGatatgc
aaaaaatattttagaactATTTAGCGCTGGTAGCTTGTGTTTACTGCTCT
ATATTTTTGTCTAGATGTCTTTGTACATactgaacattttctttctcaaa
cTTGAAATATAAAGATATAGTCATTCAAATGATGCTGTTTTCCATCTCCA
CGGAGCACTCATCTACGTACGTATcag Run BLAST on NCBI protein sequence of TCONS_00048374-protein >TCONS_00048374-protein ID=TCONS_00048374-protein|Name=TCONS_00048374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MLFVIFATCCLATTNAKSLVPSSNVWPSLEQQPGIGYRYGSVQPLWMTHV
GLTKVRGNGAAKSKDIPTVYWRVGDDSTKPNNLFFKDSIPPFFHFLQKTK
SAMDERDERRIPLYIDDESDFGNNQESDNIGESVSVNTNQERRSGQHENQ
QKVDILRKIIEERESRVAGVNMDEADKRAIRTYTYSSHRLRQLLRNYLKS
LSKLNKNKNEPRQAPADNNGVAEQDGIWGR Run BLAST on NCBI transcript from alignment at scaffold_142:479295..480876- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048374 ID=TCONS_00048374|Name=TCONS_00048374|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_142:479295..480876- (Clytia hemisphaerica)
ACAAGGCACTGTACTGGTTGTTACAGAGTACAAGCGCATTTTGTGAAAAG
TCTGAAAATTTGCGAAAATCTATAAGTGCATTTAAAAAATATCTTTGAAG
AGGTCAAATATTATTTTTTACACACTTTAATTTAATGAAATGTTGCTTCN
GAAAAGTCTGAAAATTTGCATTTAAAAAATATCTTTGAAGAGGTAAAATA
TTATTTTTTACACACTTTAATTTAATGAAATGTTTCTTCGTAATATTTGT
AGCCCCTGTATGGTACAAAATCAAAATCTTAAATTTGTTTTAAATTTGAT
TTTATAGGGCTGGTACCGATAGAAAATATAATCATGCTTTTCGTCATCTT
TGCCACTTGTTGCCTAGCAACCACAAATGCCAAATCCCTTGTACCTTCAT
CCAATGTATGGCCTTCTCTTGAACAACAACCTGGTATTGGATATCGGTAT
GGTAGTGTGCAGCCATTATGGATGACGCATGTTGGATTGACCAAAGTTCG
CGGGAATGGCGCTGCCAAGAGTAAAGATATACCAACCGTCTATTGGAGGG
TTGGTGACGACTCTACTAAGCCTAACAATTTGTTCTTCAAAGATTCAATC
CCGCCCTTTTTTCATTTCCTTCAAAAAACAAAAAGCGCCATGGACGAGAG
GGATGAACGACGAATCCCGTTATATATTGACGATGAATCCGATTTTGGCA
ATAATCAAGAGTCGGACAATATCGGCGAATCCGTTTCGGTAAACACCAAC
CAAGAAAGAAGATCTGGGCAACATGAAAACCAACAGAAAGTCGATATCTT
GCGCAAGATAATTGAAGAACGTGAATCAAGGGTGGCGGGCGTAAACATGG
ATGAGGCGGACAAGAGAGCTATTCGTACCTATACTTACAGTTCGCATCGT
TTACGTCAACTTTTGCGAAATTATTTGAAATCATTGAGTAAGTTAAATAA
GAACAAAAATGAACCAAGACAAGCGCCGGCTGATAATAATGGAGTAGCTG
AGCAAGATGGTATCTGGGGTCGCTAAAGACTCATTTTCTTAGTTCGAATT
TCATCAAAGCTTTGCACTGAACTACTGATTTAGACTCTCTGAGATCTCTA
AAAAAAACACATCATTCTAGCTTATGGCCAACACTATATATTGTACATTC
TATATAAAGACAAAAACGGCCCTTTTCAATCCATGTTACAGTGGAGTCTC
TTTAACTCAAACGTTTATTGAACGTCTTCTTAACGTTTATTGAACGTCTT
CTTAACGTTTATTGAACGTCTTCTTAACTCGAACAAGTTAAAAATGCCTT
ATAAACCTTGCTCCATATTTCGAAATTTCTCAAACAAATTTATGTCTTCT
TTTATGCGTGTTCGATTTATGGAGACTCCACTGTATATATTATAAGCCGA
TATGCAAAAAATATTTTAGAACTATTTAGCGCTGGTAGCTTGTGTTTACT
GCTCTATATTTTTGTCTAGATGTCTTTGTACATACTGAACATTTTCTTTC
TCAAACTTGAAATATAAAGATATAGTCATTCAAATGATGCTGTTTTCCAT
CTCCACGGAGCACTCATCTACGTACGTATCAG Coding sequence (CDS) from alignment at scaffold_142:479295..480876- >TCONS_00048374 ID=TCONS_00048374|Name=TCONS_00048374|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_142:479295..480876- (Clytia hemisphaerica)
ATGCTTTTCGTCATCTTTGCCACTTGTTGCCTAGCAACCACAAATGCCAA
ATCCCTTGTACCTTCATCCAATGTATGGCCTTCTCTTGAACAACAACCTG
GTATTGGATATCGGTATGGTAGTGTGCAGCCATTATGGATGACGCATGTT
GGATTGACCAAAGTTCGCGGGAATGGCGCTGCCAAGAGTAAAGATATACC
AACCGTCTATTGGAGGGTTGGTGACGACTCTACTAAGCCTAACAATTTGT
TCTTCAAAGATTCAATCCCGCCCTTTTTTCATTTCCTTCAAAAAACAAAA
AGCGCCATGGACGAGAGGGATGAACGACGAATCCCGTTATATATTGACGA
TGAATCCGATTTTGGCAATAATCAAGAGTCGGACAATATCGGCGAATCCG
TTTCGGTAAACACCAACCAAGAAAGAAGATCTGGGCAACATGAAAACCAA
CAGAAAGTCGATATCTTGCGCAAGATAATTGAAGAACGTGAATCAAGGGT
GGCGGGCGTAAACATGGATGAGGCGGACAAGAGAGCTATTCGTACCTATA
CTTACAGTTCGCATCGTTTACGTCAACTTTTGCGAAATTATTTGAAATCA
TTGAGTAAGTTAAATAAGAACAAAAATGAACCAAGACAAGCGCCGGCTGA
TAATAATGGAGTAGCTGAGCAAGATGGTATCTGGGGTCGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048374-exon-scaffold_142-1575043694:480775..480876 | TCONS_00048374-exon-scaffold_142-1575043694:480775..480876 | Clytia hemisphaerica | exon |
| TCONS_00048374-exon-scaffold_142-1575043694:479295..480569 | TCONS_00048374-exon-scaffold_142-1575043694:479295..480569 | Clytia hemisphaerica | exon |
| TCONS_00048374-exon-scaffold_142-1510915933:480775..480876 | TCONS_00048374-exon-scaffold_142-1510915933:480775..480876 | Clytia hemisphaerica | exon |
| TCONS_00048374-exon-scaffold_142-1510915933:479295..480569 | TCONS_00048374-exon-scaffold_142-1510915933:479295..480569 | Clytia hemisphaerica | exon |
| TCONS_00048374-exon-scaffold_142-1491911889:480775..480876 | TCONS_00048374-exon-scaffold_142-1491911889:480775..480876 | Clytia hemisphaerica | exon |
| TCONS_00048374-exon-scaffold_142-1491911889:479295..480569 | TCONS_00048374-exon-scaffold_142-1491911889:479295..480569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:479295..480876 - |
Blast
The following BLAST results are available for this feature:
|
