TCONS_00048366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048366
Unique NameTCONS_00048366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048366 ID=TCONS_00048366|Name=TCONS_00048366|organism=Clytia hemisphaerica|type=transcript|length=621bp
GGAAGATCTGGAGGtatttaaattaaaattacaATTACTTTCCAAGTTGG
GATGAAAGCTAAGCTAATTTTTACAATAGGGTTGAAATTGCAGGGTACTC
ATCGACTCATCAACCAATATTCCCGGTTTCTCAAGGCGATTCTACAGCCA
ATATCTCCAATGTGAAAGTTTTTCCGAGTTTGTGATACAGAGGTGTACTT
GGATGGTATTTAATTCATATTGGTAGCAACATCTGCACCACTGTCTTGTC
TACAGTAATAATCAATTGgtccaaagaaaaagtaataaaacaatCTTTCA
CGAAGGCCAATCACCACACATGAGTATCTATTGTCTCCACTTCCTTGATT
GCACAATCGACAACAATCATACTGATTACGTGAGTTACACCTGTGTCTAT
AAAGCCAAGGAGTTTGTCCTCTACCCAGCTGTTGACACCTACAACTGGCT
AATCTTGCTCTCAGATTTATACTAGCGCTAGCATAATTGACACCTTGACt
atcttgttgttgttgtgttgCTGATGATGGAGTAAGTTCTTTTGGAGTAG
GTACTATAGTTTGTTGCTTCGCTGTTCCATTTGTAATACTGTTTGATGTT
GATTCCGACGAAGGCTTTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_142:390944..391628-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048366 ID=TCONS_00048366|Name=TCONS_00048366|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at scaffold_142:390944..391628- (Clytia hemisphaerica)
GGAAGATCTGGAGGTATTTAAATTAAAATTACAATTACTTTCCAAGTTGG
GATGAAAGCTAAGCTAATTTTTACAATAGGGTTGAAATTGCAGGGTACTC
ATCGACTCATCAACCAATATTCCCGGTTTCTCAAGGCGATTCTACAGCCA
ATATCTCCAGTGTGAAAGTTTTTCCNACCAATATTCCCGGTTTCTCAAGG
CGATTCTACAGCCAATATCTCCAATGTGAAAGTTTTTCCGAGTTTGTGAT
ACAGAGGTGTACTTGGATGGTATTTAATTCATATTGGTAGCAACATCTGC
ACCACTGTCTTGTCTACAGTAATAATCAATTGGTCCAAAGAAAAAGTAAT
AAAACAATCTTTCACGAAGGCCAATCACCACACATGAGTATCTATTGTCT
CCACTTCCTTGATTGCACAATCGACAACAATCATACTGATTACGTGAGTT
ACACCTGTGTCTATAAAGCCAAGGAGTTTGTCCTCTACCCAGCTGTTGAC
ACCTACAACTGGCTAATCTTGCTCTCAGATTTATACTAGCGCTAGCATAA
TTGACACCTTGACTATCTTGTTGTTGTTGTGTTGCTGATGATGGAGTAAG
TTCTTTTGGAGTAGGTACTATAGTTTGTTGCTTCGCTGTTCCATTTGTAA
TACTGTTTGATGTTGATTCCGACGAAGGCTTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030773XLOC_030773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048366-exon-scaffold_142-1575043694:391494..391628TCONS_00048366-exon-scaffold_142-1575043694:391494..391628Clytia hemisphaericaexon
TCONS_00048366-exon-scaffold_142-1575043694:390944..391429TCONS_00048366-exon-scaffold_142-1575043694:390944..391429Clytia hemisphaericaexon
TCONS_00048366-exon-scaffold_142-1510915933:391494..391628TCONS_00048366-exon-scaffold_142-1510915933:391494..391628Clytia hemisphaericaexon
TCONS_00048366-exon-scaffold_142-1510915933:390944..391429TCONS_00048366-exon-scaffold_142-1510915933:390944..391429Clytia hemisphaericaexon
TCONS_00048366-exon-scaffold_142-1491911889:391494..391628TCONS_00048366-exon-scaffold_142-1491911889:391494..391628Clytia hemisphaericaexon
TCONS_00048366-exon-scaffold_142-1491911889:390944..391429TCONS_00048366-exon-scaffold_142-1491911889:390944..391429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:390944..391628 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.123639	0	0	0	0	0	0.207289	0	0.0424598	0.624075	0	4.37713	3.72282	2.06896	1.04561	0.268487	0.289012	0	0.262094	0.166514	0.12183	0	0.179526	1.46948	1.4748	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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