TCONS_00048449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048449
Unique NameTCONS_00048449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048449 ID=TCONS_00048449|Name=TCONS_00048449|organism=Clytia hemisphaerica|type=transcript|length=408bp
TTGTAGAGAGACATCTACCCACAGTCAAACTTACCAAACGTCAAGTtaga
tcaaaaacaaaaccatggATAACGCCAggaattttgaagtcaatcaaaaa
aCGTGACAACTACCAAACAAAACACGCTAAGGCTAAAAACTAAGGAGTCC
AAAGATCGACTCTATGAATTATATCGTAGATATCGAAATATGATAGTCAC
TTTGACAAGATGTAGTAAAAAAACCACTACATCAGATATTTTGATTTCCA
TTCTAAAATTTCTAGAAAAGTCTGGTCTGGTGTTCGCGATATAATCTCAA
CAAGAACTAACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTG
ACATCAGATCCTGAGAAAGTAGCCAATTccttcaatgattttttcactAC
TATAGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_142:13444..13851

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048449 ID=TCONS_00048449|Name=TCONS_00048449|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at scaffold_142:13444..13851 (Clytia hemisphaerica)
CAGCTATAGTagtgaaaaaatcattgaaggAATTGGCTACTTTCTCAGGA
TCTGATGTCAAAGAGTCACCTGTGATGATTGAAATGGGTGATTCTGAGTT
AGTTCTTGTTGAGATTATATCGCGAACACCAGACCAGACTTTTCTAGAAA
TTTTAGAATGGAAATCAAAATATCTGATGTAGTGGTTTTTTTACTACATC
TTGTCAAAGTGACTATCATATTTCGATATCTACGATATAATTCATAGAGT
CGATCTTTGGACTCCTTAGTTTTTAGCCTTAGCGTGTTTTGTTTGGTAGT
TGTCACGttttttgattgacttcaaaattccTGGCGTTATccatggtttt
gtttttgatctaACTTGACGTTTGGTAAGTTTGACTGTGGGTAGATGTCT
CTCTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030803XLOC_030803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048449-exon-scaffold_142-1491911889:13444..13851TCONS_00048449-exon-scaffold_142-1491911889:13444..13851Clytia hemisphaericaexon
TCONS_00048449-exon-scaffold_142-1510915933:13444..13851TCONS_00048449-exon-scaffold_142-1510915933:13444..13851Clytia hemisphaericaexon
TCONS_00048449-exon-scaffold_142-1575043694:13444..13851TCONS_00048449-exon-scaffold_142-1575043694:13444..13851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:13444..13851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.493647	2.11782	0.487361	1.8254	1.06379	3.42569	1.05128	1.48694	1.08204	1.88459	0.970751	0.913848	0	0.248029	0	0	0.219029	0	0	0.30357	0.44708	0	0.320562	0.591527	1.65929	0.985957	0.527727	0.438941	0.242716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top