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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048192 ID=TCONS_00048192|Name=TCONS_00048192|organism=Clytia hemisphaerica|type=transcript|length=1246bp
AAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGGTTCTG
TAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGCTTGCA
TGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTTTAGGT
CCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTGTGCCC
ATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaatgaaga
aattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAACGAGCGT
GTGGAGATTCTAACCGAAGATAACTTGTAAAAGAGCAATtataaaaaatc
atacaaaGAGACACGTTGGTTTGCTGGCTTAACCAACAATGATTACCCGT
CTACCATCTTTAAAGGGAGATGGTTCTTCTTAAAGGAATACTTCGAAACA
ACCAAAactaaataaagctttttatttCAAGTGAAGGGATATAGTGTTAA
TTATAAAAACTTTCTGAAACAGGAAAAgactttttaagattttaattgaG
GTATGGCTTTAGAAATCCTTTCATATCTCAAGCATCACATTGAaatacaa
cttgaaattttgcacaaagacagtCTGATAGTTTCTCTAGTATAAAAACT
TTTATAATTCAATGCCAatcatttttggaaatttgtatttAAAAATGCTG
TTTCCATTTTAGCGAGATCGTATGTTATCTCAAAGTATAGCTTTAAGGAG
AACATTCTCCCTTTAAGGAAAAGCAGCTAAGAAAATAATTGACAGCTCAT
GTTATGTTACAGCTAGCTTGCTTATATCACTTTCCAATTGAGAACACATC
TTTTCCACAGAATTTTTAGAAGTCGAAACAATTTGCTTTGGAGAACTTTG
ATCTGGTGTAGAAAATGCTGTAGTCGTGAAAATTCATGACTGTGTAATGT
TATACAGCACGAAGATTTGGATAAAAAATAGAAGAGCTACAATTTAATAC
AAAACAAATCGATATCAAGTAAAATAGGTAGCTTTGatatattttgtaaa
taatgattttatataattttaccaaaaaaaagttgTTACAAAGTCAGTAC
AATAGtgagaaaatccgatttttacggacaaaaaaaatttttccgggcAT
TGcaattttgtatcattgtgcaaaaactTAGATAAAACTGATGAGCAAAT
CCCaagagaaaagctggtaacagcagacgaacggacaaacaccggt Run BLAST on NCBI transcript from alignment at scaffold_141:208116..211443- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048192 ID=TCONS_00048192|Name=TCONS_00048192|organism=Clytia hemisphaerica|type=transcript|length=3328bp|location=Sequence derived from alignment at scaffold_141:208116..211443- (Clytia hemisphaerica)
AAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGGTTCTG
TAGAGCAACGTGCGACATGTGTGGTAAGCCTTACTATTTGCTTTATTCGG
GAAATAGTTCATACCCCTATGTTGAGGAGGTGTGACGTACAGGGTAGTAT
GGAAAGTAAAAATTCCAGGGGGTCAGGTTTTTTGCTTTTTTGTGTAAAAA
TTAACAATGGTCAATAAAATGAGGTTGAAAACATTTTCTGGAATAACGCA
ATTTTTCTGATATTGTCCAAATAAAAACTAGATTTCAAGCAAACGAAATT
TGCCGAATCATCAAATTTTTGCAACTTACTATATTTGTCTTTTGTCTTTT
TTCTATTCACTAGACGTGAAAGCATTGCCAGCTGCTTGCATGGAATCCAA
GTTCGGATGTTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGAAATA
AAGGCTGTTTTAATGGTAAGTCAGCAATATCCATTTCGATCCCATTAATT
TCCCATAATGCTTCTTGTTCTTTTTGTGAAACCATAATTGGCACAAAAAT
AAAAACTTTTTAGAAAAGCAAATTATACCAAACTCTTGCGTTATCTGATT
TTCAGATGGGGGATTGGCGGCCGCCAAGGCAAAAGCCCTGGTTGGACCAT
TGAGTTTCAAGCCCGAAGGGCTAGAGGTCAATCTCTAACCTTTCTCAGGC
AAGAAAAATTGAAGCCTTAAAATAGGCGCCGTATTTTTGATGACGGATTG
AATCTTGCAATTCCTTTGTCTTCGAGTGATATATTTTTCGAAATTAAGCG
GTAAATTTTAGTTTCAATCTGTCATTTGTGTAAAAACCAGGCGGGTCGCT
CAAGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CAGTCTGTCATTTGTGTAAAAACCAGACGGGTCGCTCAAGGCCGCGCAAC
TTTGGTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGATTGACCTCTAG
CTCTTCGGGCTTGAAACTCAATGGGTTGGACCTGCCAATCCCCAACAACG
AGGGCTGGGTTATCAGGCCTCCCGCACTGATTTATAAAGTCCGAAGGGCT
AAATGTCATACTTTAAGCCATCGCAGGCAAAAAAAGTGAATATCGCAAGA
AGAATTTTTTCCATTGTTTCCGGAAATCCTCGAAGCTTCTGATTGGTCAA
GCATTGAAATTCTATTATAATGTCGTGTGACGGAGGTAGAATTTCCTACC
TAACCACGGCGGCACACTTTTCAGCCAAAGCACGACATCTAGCCCATCGG
GCTTTCTAATCTGTACCTCCCGATGAAAAATCCTTGACGCGGTCTCGCAA
AATTCCGTAATGTAAACCTTCCAGATGTTGAAAATTTTCCCGACATTCAG
AGCTTTAGCGTGTTGGAATTAAAATTTCTGCATCTGAGTGCCAGATAAAC
TCTGGCGTGGAGCCTGATGAGTTGCACGGAAATATGTATGCAAAGAAAAA
TATTTTCATTCACCTTCTTGCTTGTTTGCATACGACAGGTTGCCGAGATG
GTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAA
GAAACAATGAAGAAATTTTGTCCTTACACATGTCGATATTGCGGTGAGTA
TGATAGATCCCAACTACTCTGGAAAGAGAAAGAAAACTTACAATAATAGA
TAATCTATAGAGAGCCAAGATATTACTGAATACCCGAATGAATACCCTTG
CAATGTTTTATGAATGTTCTTAAATATTGAAGGCTTCGAAACCTCGTGTT
GTTTTTGTAGAGCCAAAACATGCATTTGATGTCATATCGATATCAATAGC
AATACCTACCATAACGATTTAGCCCCCGGGGAGGGGAGGGTACTTAGGCA
AATTGAGGGTACGGTATGTGTCGCCCTTAAGGGTACCTTTTGTGGATTTC
CAAAGTCCCGCTAAAAGTCGGAAAAATCAGAAAATCAAATTTCAGTCCCA
CCAAGGGTCGTAGAAATAGGAAGACTTCAACTTTTTAACCCCCGGAAAGA
TAAAAACTTGGTCAAATTTGTCCCAATAAGGTTCGTAAAATTTACAAAAT
TTTCCTTTGTTTTCTCTTTTTTAGTCCCGGCAAGGGTCCAAGGGTCGAAA
GTCGGGCGGCACCCCCCGTCAGCTAGCCCTAGTACCACCCCCCCCGGGAT
TTATCTAAACTGAGCCCGACCCCGATTTGAACCTAACAACTCAATTTCTA
ATTCCGTTGTACACTTCCTTTCCGGTCATAATTTATATTGGAAATTTATT
CCTCTGTTATAGTACCTGAAGGCAACGAGCGTGTGGAGATTCTAACCGAA
GATAACTTGTAAAAGAGCAATTATAAAAAATCATACAAAGAGACACGTTG
GTTTGCTGGCTTAACCAACAATGATTACCCGTCTACCATCTTTAAAGGGA
GATGGTTCTTCTTAAAGGAATACTTCGAAACAACCAAAACTAAATAAAGC
TTTTTATTTCAAGTGAAGGGATATAGTGTTAATTATAAAAACTTTCTGAA
ACAGGAAAAGACTTTTTAAGATTTTAATTGAGGTATGGCTTTAGAAATCC
TTTCATATCTCAAGCATCACATTGAAATACAACTTGAAATTTTGCACAAA
GACAGTCTGATAGTTTCTCTAGTATAAAAACTTTTATAATTCAATGCCAA
TCATTTTTGGAAATTTGTATTTAAAAATGCTGTTTCCATTTTAGCGAGAT
CGTATGTTATCTCAAAGTATAGCTTTAAGGAGAACATTCTCCCTTTAAGG
AAAAGCAGCTAAGAAAATAATTGACAGCTCATGTTATGTTACAGCTAGCT
TGCTTATATCACTTTCCAATTGAGAACACATCTTTTCCACAGAATTTTTA
GAAGTCGAAACAATTTGCTTTGGAGAACTTTGATCTGGTGTAGAAAATGC
TGTAGTCGTGAAAATTCATGACTGTGTAATGTTATACAGCACGAAGATTT
GGATAAAAAATAGAAGAGCTACAATTTAATACAAAACAAATCGATATCAA
GTAAAATAGGTAGCTTTGATATATTTTGTAAATAATGATTTTATATAATT
TTACCAAAAAAAAGTTGTTACAAAGTCAGTACAATAGTGAGAAAATCCGA
TTTTTACGGACAAAAAAAATTTTTCCGGGCATTGCAATTTTGTATCATTG
TGCAAAAACTTAGATAAAACTGATGAGCAAATCCCAAGAGAAAAGCTGGT
AACAGCAGACGAACGGACAAACACCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048192-exon-scaffold_141-1575043694:211371..211443 | TCONS_00048192-exon-scaffold_141-1575043694:211371..211443 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1575043694:210979..211080 | TCONS_00048192-exon-scaffold_141-1575043694:210979..211080 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1575043694:209751..209855 | TCONS_00048192-exon-scaffold_141-1575043694:209751..209855 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1575043694:208116..209081 | TCONS_00048192-exon-scaffold_141-1575043694:208116..209081 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1510915933:211371..211443 | TCONS_00048192-exon-scaffold_141-1510915933:211371..211443 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1510915933:210979..211080 | TCONS_00048192-exon-scaffold_141-1510915933:210979..211080 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1510915933:209751..209855 | TCONS_00048192-exon-scaffold_141-1510915933:209751..209855 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1510915933:208116..209081 | TCONS_00048192-exon-scaffold_141-1510915933:208116..209081 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1491911889:211371..211443 | TCONS_00048192-exon-scaffold_141-1491911889:211371..211443 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1491911889:210979..211080 | TCONS_00048192-exon-scaffold_141-1491911889:210979..211080 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1491911889:209751..209855 | TCONS_00048192-exon-scaffold_141-1491911889:209751..209855 | Clytia hemisphaerica | exon |
| TCONS_00048192-exon-scaffold_141-1491911889:208116..209081 | TCONS_00048192-exon-scaffold_141-1491911889:208116..209081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:208116..211443 - |
Blast
The following BLAST results are available for this feature:
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