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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048161 ID=TCONS_00048161|Name=TCONS_00048161|organism=Clytia hemisphaerica|type=transcript|length=442bp
GTCGccgatagatttttaaaaaatatggcAGCTTGTAAACCAGAAGAGTA
TGGTTTTGATGTGACGTTCATCTGGGAAGACGAAAAATCTGAAATATCTC
AAACAACAGAAGAAAATTCTGTACAGAACGCCAAAGAAATCAATAGAGAT
GACATCACTTGTGCAATATGTCTTTTGGTTTTGCGAGAACCAGTGCAAGC
CGTGAAATGCGGGCATcgattttgtgaaaaatgtaTTGGGGAATTTCATC
TTCAGAAtCCGGGAAAATGCCCCAAAGATTGGCAAGAGATTCAatgggaa
aaaaaagagaaatactCAGTTTGAAGATTCGATGTCCGAATTTTGTTGAT
GGATGTACGTGGCAGCATGAGCTCAGAGGGAAAGAGgTTCACCTGGAAAC
TTGTGGTTTTGTGACCGTTCCTTGTGAATTGGATTGTGGAGA Run BLAST on NCBI transcript from alignment at scaffold_141:203748..204672+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048161 ID=TCONS_00048161|Name=TCONS_00048161|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at scaffold_141:203748..204672+ (Clytia hemisphaerica)
GTCGccgatagatttttaaaaaatatggcAGCTTGTAAACCAGAAGAGTA
TGGTTTTGATGTGACGTTCATCTGGGAAGACGAAAAATCTGAAATATCTC
AAACAACAGAAGAAAATTCTGTACAGAACGCCAAAGAAATCAATAGAGAT
GACATCACTTGTGCAATATGTCTTTTGGTTTTGCGAGAACCAGTGCAAGC
CGTGAAATGCGGGCATcgattttgtgaaaaatgtaTTGGGGAATTTCATC
TTCAGAAGTAAGTGTGAACAGTAGTCAGTTCACGTCgaaattttctatat
ttttgttAGTCGTCATTTTCTTGTGCTCTATGAATTTTTTCGTTAAGCAA
AGAATCTACTActcaaattaatttattttagtCCGGGAAAATGCCCCAAA
GATTGGCAAGAGATTCAatgggaaaaaaaagagaaatactCAGTTTGAAG
ATTCGATGTCCGAATTTTGTTGATGGATGTACGTGGCAGCATGAGCTCAG
AGGGAAAGAGGTTTGTTTTCAGTCGTTATTTCATTTGATGTCATCTGTAC
GCAGAATAAAGAAGTTTTGAAAAGTGGGGGGATAGTACTTTGAATCTTTC
TTTCCAAATTCTAATTTTGGGATCTGGCACTGTGTTAAAATCCTAAAGAC
CCTCCACACTTTACGCAAATTTTTACTAAATTGGATACTTTAACTTATGC
TCTCATTAGGGCCAATTTATGAAGTGAAACCATATCACCTTGGATGGGGG
GAGTCTACTTGATGATATTTAGAGGAGGGGTAGAGTGGGTTATCTATAAC
TGAGGTAGTAAAcccttttcaatttcattttgaaatagatttaatAACAA
TcctttatcattgttttaggTTCACCTGGAAACTTGTGGTTTTGTGACCG
TTCCTTGTGAATTGGATTGTGGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048161-exon-scaffold_141-1491911889:203748..204004 | TCONS_00048161-exon-scaffold_141-1491911889:203748..204004 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1510915933:203748..204004 | TCONS_00048161-exon-scaffold_141-1510915933:203748..204004 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1575043694:203748..204004 | TCONS_00048161-exon-scaffold_141-1575043694:203748..204004 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1491911889:204129..204257 | TCONS_00048161-exon-scaffold_141-1491911889:204129..204257 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1510915933:204129..204257 | TCONS_00048161-exon-scaffold_141-1510915933:204129..204257 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1575043694:204129..204257 | TCONS_00048161-exon-scaffold_141-1575043694:204129..204257 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1491911889:204617..204672 | TCONS_00048161-exon-scaffold_141-1491911889:204617..204672 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1510915933:204617..204672 | TCONS_00048161-exon-scaffold_141-1510915933:204617..204672 | Clytia hemisphaerica | exon |
| TCONS_00048161-exon-scaffold_141-1575043694:204617..204672 | TCONS_00048161-exon-scaffold_141-1575043694:204617..204672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:203748..204672 + |
Blast
The following BLAST results are available for this feature:
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