TCONS_00048148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048148
Unique NameTCONS_00048148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048148 ID=TCONS_00048148|Name=TCONS_00048148|organism=Clytia hemisphaerica|type=transcript|length=1424bp
ATAACGAATCACGTGGATACAATATGTCCAATGATCTCCTCTTGTGAATA
CAAAGACTCAGGATGCTACTTTAAGGGCACCAAATTACAACTGGACAATC
ATATGGCACAATCGGCCAACATGCATTTGTCTCTTGAAATGAAAAgtgag
attttcaaaataaaaaaagaattcgaTCAAAAGTTGACAGCGAAAGATCT
CGAAgctcaagaaatgaaaaataaatttgctgaACAGTTGAAAATGAGGG
ATAACGAAATCGGAAAAGTCCGGTTGGATCTTGATGGAGACTTGAAAGCA
AAAGACAAAATGATTCAAGCATTAGCGGAGCGGTTAAAAATTGCAGAAGA
GAAATTGAAAGGGGTCGACGCAATGGAAATTAAAATTCAGATGAACCAAA
CCACCATCAAGTCGTTGGAGAAAAAAATGCTGACGAAGTTGAAGGCAACC
GATAAAtctctttttgatttgaaagaagAATTTATGCTGACTAAGCAGGA
AGTTGAGAAAGTCAAAGAACAGCATCAAAAAGACGACCTTTTTAAAGCAT
CGGGTAGAGGTTTNGAAgttgaaaaagtcaaagaacGGAATCAAAAAGAC
GATCTTATTAAAGCATCGGGTAGAGCTGTAAAAGAGGAATTAAATTTGGC
TATCTGCGCACCATCACTATGTAACTATACATGGACTATCGAAAAATTCA
AAGAGAAATTTGACGCTGCTATGAAATGGAGATCTGGTGATTCACCATAT
TTTTTTACTAAGCATGGTTATAAAGGATGTATTTTCTCTGGGTTTCGCGA
GACCAATAAAGACAACGAAAACACTTATGTGTCAGTTTTCTTTAATAATG
TGGTGGGACCTCGTGACGATACTTTGGAATGGCCAATGCCTTGGAAATCG
ATGATTTTCAATTTAATATTTAATGGAGTTGAAATTGCTCAAACTGTGAC
AAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTCATTTAAAAGACCAT
TTAGGGATATATCTTCATTTGTGGGCAATCGGTCAGCATTTGAGCACGGC
TTATTCAAGAACATAACTATGAATGATAGGGTTGCAATAAGATTTGAAAT
GAATTGATCTTATACTCAGTGAATGGTGTAAGCTACATTTGAAACAGATT
ATCCATTTCGAAGAAATTGTATTTATGGGTGGAGCCTTGGATTAGTCGAT
CGAATTATTTATCGTATTTAATCAACTTTTTAATTTAAGACCTCCATTTA
AACCTAAATGATCGATGGTAATTACAGTAATTACTTAACCTTACTCTTAG
ATTGACTTCGCCTTTGGATATTTTGGACGTATGTTTTCGTCTTCTTTTTA
GAGTAAGTGAAGAGTTTATAAAGATTACAAATACTCTTTGGTTccaaata
attttcgaaaattaacaATCAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_141:176604..178310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048148 ID=TCONS_00048148|Name=TCONS_00048148|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at scaffold_141:176604..178310+ (Clytia hemisphaerica)
ATAACGAATCACGTGGATACAATATGTCCAATGATCTCCTCTTGTGAATA
CAAAGACTCAGGATGCTACTTTAAGGTAAATTTTTCTTATGTTGAAGCtg
cttttttcaatttccaaaggaatgaaatgaaaatttccgaATAAATCGAG
AGACGAACTAAGCTGGCTAACTACAAAAGACTCTGCAAGGAGTCTTTCGT
GGATAAAGTGCTACAGTATCtttattttgtcttatttttcaAAGTAGCTG
TACTCTCCGGATTTTTTGTCATCTAAGTAAGTACAGTAAAGTATATAGGT
AATAAGCCAGATATATTATTTGAAAAGCTAACGCAGTTTCTAAATTGTTG
CGTTTCAGGGCACCAAATTACAACTGGACAATCATATGGCACAATCGGCC
AACATGCATTTGTCTCTTGAAATGAAAAgtgagattttcaaaataaaaaa
agaattcgaTCAAAAGTTGACAGCGAAAGATCTCGAAgctcaagaaatga
aaaataaatttgctgaACAGTTGAAAATGAGGGATAACGAAATCGGAAAA
GTCCGGTTGGATCTTGATGGAGACTTGAAAGCAAAAGACAAAATGATTCA
AGCATTAGCGGAGCGGTTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCG
ACGCAATGGAAATTAAAATTCAGATGAACCAAACCACCATCAAGTCGTTG
GAGAAAAAAATGCTGACGAAGTTGAAGGCAACCGATAAAtctctttttga
tttgaaagaagAATTTATGCTGACTAAGCAGGAAGTTGAGAAAGTCAAAG
AACAGCATCAAAAAGACGACCTTTTTAAAGCATCGGGTAGAGGTTTNGAA
gttgaaaaagtcaaagaacGGAATCAAAAAGACGATCTTATTAAAGCATC
GGGTAGAGCTGTAAAAGAGGAATTAAATTTGGCTATCTGCGCACCATCAC
TATGTAACTATACATGGACTATCGAAAAATTCAAAGAGAAATTTGACGCT
GCTATGAAATGGAGATCTGGTGATTCACCATATTTTTTTACTAAGCATGG
TTATAAAGGATGTATTTTCTCTGGGTTTCGCGAGACCAATAAAGACAACG
AAAACACTTATGTGTCAGTTTTCTTTAATAATGTGGTGGGACCTCGTGAC
GATACTTTGGAATGGCCAATGCCTTGGAAATCGATGATTTTCAATTTAAT
ATTTAATGGAGTTGAAATTGCTCAAACTGTGACAAGAAGTACAGATGAAG
GAGGTAGATGGAAAGATTCATTTAAAAGACCATTTAGGGATATATCTTCA
TTTGTGGGCAATCGGTCAGCATTTGAGCACGGCTTATTCAAGAACATAAC
TATGAATGATAGGGTTGCAATAAGATTTGAAATGAATTGATCTTATACTC
AGTGAATGGTGTAAGCTACATTTGAAACAGATTATCCATTTCGAAGAAAT
TGTATTTATGGGTGGAGCCTTGGATTAGTCGATCGAATTATTTATCGTAT
TTAATCAACTTTTTAATTTAAGACCTCCATTTAAACCTAAATGATCGATG
GTAATTACAGTAATTACTTAACCTTACTCTTAGATTGACTTCGCCTTTGG
ATATTTTGGACGTATGTTTTCGTCTTCTTTTTAGAGTAAGTGAAGAGTTT
ATAAAGATTACAAATACTCTTTGGTTccaaataattttcgaaaattaaca
ATCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030652XLOC_030652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048148-exon-scaffold_141-1491911889:176604..176678TCONS_00048148-exon-scaffold_141-1491911889:176604..176678Clytia hemisphaericaexon
TCONS_00048148-exon-scaffold_141-1510915933:176604..176678TCONS_00048148-exon-scaffold_141-1510915933:176604..176678Clytia hemisphaericaexon
TCONS_00048148-exon-scaffold_141-1575043694:176604..176678TCONS_00048148-exon-scaffold_141-1575043694:176604..176678Clytia hemisphaericaexon
TCONS_00048148-exon-scaffold_141-1491911889:176962..178310TCONS_00048148-exon-scaffold_141-1491911889:176962..178310Clytia hemisphaericaexon
TCONS_00048148-exon-scaffold_141-1510915933:176962..178310TCONS_00048148-exon-scaffold_141-1510915933:176962..178310Clytia hemisphaericaexon
TCONS_00048148-exon-scaffold_141-1575043694:176962..178310TCONS_00048148-exon-scaffold_141-1575043694:176962..178310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:176604..178310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.749733	0.559596	1.09933	1.15702	0.863111	0.829898	0.551912	0.335747	0.62444	0.904933	0	0	0	0	0	0	0	0	0	0	0.542711	0.61184	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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