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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048184 ID=TCONS_00048184|Name=TCONS_00048184|organism=Clytia hemisphaerica|type=transcript|length=811bp
CTTTTATCAAGATCTGTGTTAAATGACCGTCCAGAAACAACAAAAACCAT
CGATCCAACTGTCAATATACCGGGTACGAGCCAAAAGATCTACAAGTCAA
AGCTGATAAATATGCTGAATCAGGACCCAAAACTTTCAAAGAAACGCTTA
ACACGTGTAAGGCAACGGCAAGAGTTTACCCGTAAATCTGacaaaatcaa
tcaaattaCCACAAGTGAGAATGTGGCTTTATTTTCCGAATTCGCCTTCA
TCGAACGTCTAACTTTGGATTTTCAAATCGGTATGATAGAGAGGATAAAA
TGTAGTGGAGTCGAGTACAAACGTCCTGAACCTCTCAACTCAGCAAAGAA
AAAGGATTTGTCTGTGATCATATCAGTTTATAAAAAGAGCACCGACGAGG
GTCCGGATATCCTTTTTTCGAATAAGGAAAGGAAGCTACGCACCATTCCA
TTCAGTGACCTTCTCTGTGAAGTCGTTCTGCAATCAACAGAGAGTTCACA
GCTCAGACTCTGTCCAACAGATCGGCTTCACTTAGATTCCCTCATTAAAT
CGAGATTCAGATCGAAAGGAGTAACACCAACAACCACAGAATTGGAGAAC
TCAACGCAAGACGAAAACAACAATATTCAGCTTGATAATGATGGTACCGT
TCGGATGACTGTAGAACCTGTTGCGAATGATGGGAATACGAGACGTTCAA
AAAGAGTTCGCACTGTTAGAGTAATGAATGAGTAACTGAgaagaaacgtt
ttttttaactttttttccattATCATATGACTGATAAATTTATTCTCTGA
TCCTTTATAAT Run BLAST on NCBI protein sequence of TCONS_00048184-protein >TCONS_00048184-protein ID=TCONS_00048184-protein|Name=TCONS_00048184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
LLSRSVLNDRPETTKTIDPTVNIPGTSQKIYKSKLINMLNQDPKLSKKRL
TRVRQRQEFTRKSDKINQITTSENVALFSEFAFIERLTLDFQIGMIERIK
CSGVEYKRPEPLNSAKKKDLSVIISVYKKSTDEGPDILFSNKERKLRTIP
FSDLLCEVVLQSTESSQLRLCPTDRLHLDSLIKSRFRSKGVTPTTTELEN
STQDENNNIQLDNDGTVRMTVEPVANDGNTRRSKRVRTVRVMNE Run BLAST on NCBI transcript from alignment at scaffold_141:42862..43872- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048184 ID=TCONS_00048184|Name=TCONS_00048184|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at scaffold_141:42862..43872- (Clytia hemisphaerica)
CTTTTATCAAGATCTGTGTTAAATGACCGTCCAGAAACAACAAAAACCAT
CGATCCAACTGTCAATATACCGGGTACGAGCCAAAAGATCTACAAGTCAA
AGCTGATAAATATGCTGAATCAGGACCCAAAACTTTCAAAGAAACGCTTA
ACACGTGTAAGGTATGTATCCCATTCCTTCTTTATGTTTTATTTGTTTGT
TGGTATCATCTTTAGGACCGACTTTACTGTAAGACTAAAGAAATACTGAA
ATTCCATCGAAATAGTTTGCTCGTCTCAAAAGTTGATCTCTACCTTATTT
TATGTATGTATTCCTTAAGTAATAAACCTCCGACTCAGACGGTATTAACA
TTTGTTTTTAGGCAACGGCAAGAGTTTACCCGTAAATCTGACAAAATCAA
TCAAATTACCACAAGTGAGAATGTGGCTTTATTTTCCGAATTCGCCTTCA
TCGAACGTCTAACTTTGGATTTTCAAATCGGTATGATAGAGAGGATAAAA
TGTAGTGGAGTCGAGTACAAACGTCCTGAACCTCTCAACTCAGCAAAGAA
AAAGGATTTGTCTGTGATCATATCAGTTTATAAAAAGAGCACCGACGAGG
GTCCGGATATCCTTTTTTCGAATAAGGAAAGGAAGCTACGCACCATTCCA
TTCAGTGACCTTCTCTGTGAAGTCGTTCTGCAATCAACAGAGAGTTCACA
GCTCAGACTCTGTCCAACAGATCGGCTTCACTTAGATTCCCTCATTAAAT
CGAGATTCAGATCGAAAGGAGTAACACCAACAACCACAGAATTGGAGAAC
TCAACGCAAGACGAAAACAACAATATTCAGCTTGATAATGATGGTACCGT
TCGGATGACTGTAGAACCTGTTGCGAATGATGGGAATACGAGACGTTCAA
AAAGAGTTCGCACTGTTAGAGTAATGAATGAGTAACTGAGAAGAAACGTT
TTTTTTAACTTTTTTTCCATTATCATATGACTGATAAATTTATTCTCTGA
TCCTTTATAAT Coding sequence (CDS) from alignment at scaffold_141:42862..43872- >TCONS_00048184 ID=TCONS_00048184|Name=TCONS_00048184|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_141:42862..43872- (Clytia hemisphaerica)
GCAACGGCAAGAGTTTACCCGTAAATCTGACAAAATCAATCAAATTACCA
CAAGTGAGAATGTGGCTTTATTTTCCGAATTCGCCTTCATCGAACGTCTA
ACTTTGGATTTTCAAATCGGTATGATAGAGAGGATAAAATGTAGTGGAGT
CGAGTACAAACGTCCTGAACCTCTCAACTCAGCAAAGAAAAAGGATTTGT
CTGTGATCATATCAGTTTATAAAAAGAGCACCGACGAGGGTCCGGATATC
CTTTTTTCGAATAAGGAAAGGAAGCTACGCACCATTCCATTCAGTGACCT
TCTCTGTGAAGTCGTTCTGCAATCAACAGAGAGTTCACAGCTCAGACTCT
GTCCAACAGATCGGCTTCACTTAGATTCCCTCATTAAATCGAGATTCAGA
TCGAAAGGAGTAACACCAACAACCACAGAATTGGAGAACTCAACGCAAGA
CGAAAACAACAATATTCAGCTTGATAATGATGGTACCGTTCGGATGACTG
TAGAACCTGTTGCGAATGATGGGAATACGAGACGTTCAAAAAGAGTTCGC
ACTGTTAGAGTAATGAATGAGTAACTTTTATCAAGATCTGTGTTAAATGA
CCGTCCAGAAACAACAAAAACCATCGATCCAACTGTCAATATACCGGGTA
CGAGCCAAAAGATCTACAAGTCAAAGCTGATAAATATGCTGAATCAGGAC
CCAAAACTTTCAAAGAAACGCTTAACACGTGTAAGGCAACGGCAAGAGTT
TACCCGTAAATCTGACAAAATCAATCAAATTACCACAAGTGAGAATGTGG
CTTTATTTTCCGAATTCGCCTTCATCGAACGTCTAACTTTGGATTTTCAA
ATCGGTATGATAGAGAGGATAAAATGTAGTGGAGTCGAGTACAAACGTCC
TGAACCTCTCAACTCAGCAAAGAAAAAGGATTTGTCTGTGATCATATCAG
TTTATAAAAAGAGCACCGACGAGGGTCCGGATATCCTTTTTTCGAATAAG
GAAAGGAAGCTACGCACCATTCCATTCAGTGACCTTCTCTGTGAAGTCGT
TCTGCAATCAACAGAGAGTTCACAGCTCAGACTCTGTCCAACAGATCGGC
TTCACTTAGATTCCCTCATTAAATCGAGATTCAGATCGAAAGGAGTAACA
CCAACAACCACAGAATTGGAGAACTCAACGCAAGACGAAAACAACAATAT
TCAGCTTGATAATGATGGTACCGTTCGGATGACTGTAGAACCTGTTGCGA
ATGATGGGAATACGAGACGTTCAAAAAGAGTTCGCACTGTTAGAGTAATG
AATGAGTAACTTTTATCAAGATCTGTGTTAAATGACCGTCCAGAAACAAC
AAAAACCATCGATCCAACTGTCAATATACCGGGTACGAGCCAAAAGATCT
ACAAGTCAAAGCTGATAAATATGCTGAATCAGGACCCAAAACTTTCAAAG
AAACGCTTAACACGTGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048184-exon-scaffold_141-1575043694:43712..43872 | TCONS_00048184-exon-scaffold_141-1575043694:43712..43872 | Clytia hemisphaerica | exon |
| TCONS_00048184-exon-scaffold_141-1575043694:42862..43511 | TCONS_00048184-exon-scaffold_141-1575043694:42862..43511 | Clytia hemisphaerica | exon |
| TCONS_00048184-exon-scaffold_141-1510915933:43712..43872 | TCONS_00048184-exon-scaffold_141-1510915933:43712..43872 | Clytia hemisphaerica | exon |
| TCONS_00048184-exon-scaffold_141-1510915933:42862..43511 | TCONS_00048184-exon-scaffold_141-1510915933:42862..43511 | Clytia hemisphaerica | exon |
| TCONS_00048184-exon-scaffold_141-1491911889:43712..43872 | TCONS_00048184-exon-scaffold_141-1491911889:43712..43872 | Clytia hemisphaerica | exon |
| TCONS_00048184-exon-scaffold_141-1491911889:42862..43511 | TCONS_00048184-exon-scaffold_141-1491911889:42862..43511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:42862..43872 - |
Blast
The following BLAST results are available for this feature:
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