TCONS_00048139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048139
Unique NameTCONS_00048139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048139 ID=TCONS_00048139|Name=TCONS_00048139|organism=Clytia hemisphaerica|type=transcript|length=323bp
tTGAATATCCGGCAAAAAGACCTAAAAAATGATTGGTAACATTTAATAAG
AAATGAAGTGATATCGAGACAACTTCATTTTGAACGATCTATGATTAAAG
TTGCTTAGCGACATCGGTTATGGTTGCCAAAAGAAGTCATTACCAGATGA
TCCATCCATCATATCATACCATATCTCAACGATTGCATTGAATACTCACA
TAAATATACCTATGGTTCGCAACAATCACCAAGCAAGCACTGTCATCTGG
CATCTGGCATATCCATCAGCTGTATCAAAAAAATTCCATCATTATAACAA
ATCTATCCACCAACCAAATCGTC
Run BLAST on NCBI

transcript from alignment at scaffold_140:239961..240283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048139 ID=TCONS_00048139|Name=TCONS_00048139|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_140:239961..240283 (Clytia hemisphaerica)
GACGATTTGGTTGGTGGATAGATTTGTTATAATGATGGAATTTTTTTGAT
ACAGCTGATGGATATGCCAGATGCCAGATGACAGTGCTTGCTTGGTGATT
GTTGCGAACCATAGGTATATTTATGTGAGTATTCAATGCAATCGTTGAGA
TATGGTATGATATGATGGATGGATCATCTGGTAATGACTTCTTTTGGCAA
CCATAACCGATGTCGCTAAGCAACTTTAATCATAGATCGTTCAAAATGAA
GTTGTCTCGATATCACTTCATTTCTTATTAAATGTTACCAATCATTTTTT
AGGTCTTTTTGCCGGATATTCAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030644XLOC_030644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048139-exon-scaffold_140-1491911889:239961..240283TCONS_00048139-exon-scaffold_140-1491911889:239961..240283Clytia hemisphaericaexon
TCONS_00048139-exon-scaffold_140-1510915933:239961..240283TCONS_00048139-exon-scaffold_140-1510915933:239961..240283Clytia hemisphaericaexon
TCONS_00048139-exon-scaffold_140-1575043694:239961..240283TCONS_00048139-exon-scaffold_140-1575043694:239961..240283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:239961..240283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311183	1.21381	0.352337	0	0.419647	0	0	0.374545	0.524456	0	0	0.621738	0.413916	0	0.1767	0.379252	0.700811	0	0	0.346152	0	0.44026	0	0.324379	0.334103	0.298179	0	0.910757	0	0.351896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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