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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=transcript|length=1384bp
CGAAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAA
CAAATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTT
CAACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATC
AGCTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGC
CACGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAA
GAAGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTC
TCAAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTC
ACACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACT
TCAAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACG
GAAAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATT
GTAAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGA
CAAAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCAC
CAGGATCAAAACTGgaacaaactctcaaaaagACGTTAAAAGATGTTAAA
AAAGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAAT
AAAATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAc
actctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAA
GATACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAA
AATGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAA
TCATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAG
TTGGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGG
ACATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTT
CTTTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGG
TTATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTT
CATCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTG
CCATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAG
TATATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTT
TTACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCA
ATAAGATCTTCTTTGTTGCCCCTTACGGATGCGG Run BLAST on NCBI protein sequence of TCONS_00048002-protein >TCONS_00048002-protein ID=TCONS_00048002-protein|Name=TCONS_00048002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
KNINPLKCTKRTSLYEQILTNAKSTIDKQNRKFNLGNGQLLNDPILAADQ
LLFREYADSALFNTNRHDPVFIPPVFQSHQYAKKDSTVHILDYDVDINTL
KKCLDNLKKDSPAFWFTRELQSFHCRHWLTKALQAFSELQENNTDKEING
KEFSNWILNVKIKYLIVKELATVNMTLPSTTEDKNTFIEACIQELASKSP
GSKLEQTLKKTLKDVKKEVENLVKQNPPSHPTIKWLFGLVLSELGEKGEH
SFFEKLYSIKDDPVLQDTVILSSINFLTNVQKKMHQEIDVLIFSWTKKLI
IGVEIKRTLTIKAFDQLDKYHKLIEERLSDQLGHGWTYHPAILVEKDDLS
FNNQHYIDQETDLKCWLSILFAKFPTVPSGIPFIPAVNQVKDLLRIVVFA
IHASKTAPITTSNWVEYISKAIDTVCTTDNILFYSQRQLPIMKTNTSEFN
KIFFVAPYGC Run BLAST on NCBI transcript from alignment at scaffold_14:504154..506435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=transcript|length=2282bp|location=Sequence derived from alignment at scaffold_14:504154..506435+ (Clytia hemisphaerica)
CGAAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAA
CAAATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTT
CAACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATC
AGCTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGC
CACGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAA
GAAGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTC
TCAAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTC
ACACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACT
TCAAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACG
GAAAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATT
GTAAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGA
CAAAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCAC
CAGGATCAAAACTGgaacaaactctcaaaaaggTAACTTATCAACAATTT
GGTTCtcgaaatttataaaaatcctTAGGTAACAAAGTTCTAGGTGAACA
aggcccgggggggtactacccttttcaaccgacgggggtgctccgctgag
gttcgaaaaatggaccctacgtgggactcgaaatttgcaaaaaaagtgac
cctgaatgggactgaaattccaaaattttctcaaattttctactttttcc
ccaaaagtaggtaccctacgagggactggtttttctattttggtgttttt
gcgaccctacctgggactcgtggaggttaaaaaaggtaccctggccagcg
gagcatccccctaacccatcttgccctattACCTCCCCCCGGGGTTTCAT
TACCACAAGTAATCCAACTCATCCCCCCCGGGAACAAGGACCTCTGAAGC
TGATCGTGATTATTATTGTCAATTGTCTTGTGTCGAATCTTTTTGTCTCt
ttgaatacacgcttttttttttataagaatacactttataagaatatcca
tgatgaaaatggccaaaaaattaagagtatggtaagaatatcaccatcat
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaa
gaatatcaccatcatagaatttagcaactgaacctaagaatgccatttta
aatgcattttaacctgtagattgccaatttcgatcttaacctaagaatac
cgtaagaatatttttggatgattttcgccaaaaagttaagaatatccatg
atgaaatgcaaaaacaccattcttataaaaaaaagcgtgtactttgACTG
GTTTTGACAGTTTATTTCAGATTGATATAGTTCAGTAAAAGAAagaattc
gttttttttaatccCTAATTTCATTTCCAGACGTTAAAAGATGTTAAAAA
AGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAATAA
AATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAcac
tctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAAGA
TACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAAAA
TGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAATC
ATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAGTT
GGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGGAC
ATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTTCT
TTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGGTT
ATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTTCA
TCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGCC
ATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAGTA
TATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTTTT
ACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCAAT
AAGATCTTCTTTGTTGCCCCTTACGGATGCGG Coding sequence (CDS) from alignment at scaffold_14:504154..506435+ >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_14:504154..506435+ (Clytia hemisphaerica)
AAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAACA
AATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTTCA
ACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATCAG
CTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGCCA
CGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAAGA
AGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTCTC
AAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTCAC
ACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACTTC
AAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACGGA
AAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATTGT
AAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGACA
AAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCACCA
GGATCAAAACTGgaacaaactctcaaaaagACGTTAAAAGATGTTAAAAA
AGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAATAA
AATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAcac
tctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAAGA
TACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAAAA
TGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAATC
ATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAGTT
GGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGGAC
ATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTTCT
TTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGGTT
ATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTTCA
TCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGCC
ATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAGTA
TATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTTTT
ACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCAAT
AAGATCTTCTTTGTTGCCCCTTACGGATGCAAGAATATCAATCCATTAAA
ATGCACCAAACGAACATCATTGTATGAACAAATATTGACAAATGCAAAAT
CCACCATAGACAAACAAAACCGAAAGTTCAACCTCGGGAATGGCCAGTTA
CTTAACGACCCTATTCTTGCCGCTGATCAGCTTCTCTTTAGAGagtatgc
tgattcagcattatTCAACACCAACCGCCACGATCCTGTATTTATTCCCC
CAGTTTTTCAATCACACCAATACGCGAAGAAGGATTCAACCGTGCATATC
CTTGATTACGATGTTGACATAAACACTCTCAAGAAATGTTTGGATAATTT
GAAGAAGGATTCGCCAGCCTTTTGGTTCACACGTGAGCTCCAATCCTTCC
ATTGTCGCCACTGGTTAACAAAGGCACTTCAAGCTTTCTCTGAATTGCAG
GAAAACAACACTGACAAAGAGATCAACGGAAAAGAATTCAGCAATTGGAT
TCTCAATGTAAAGATCAAGTATCTAATTGTAAAAGAGTTGGCGACAGTCA
ATATGACTCTACCATCAACAACTGAGGACAAAAACACATTCATCGAAGCA
TGTATTCAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGgaacaaac
tctcaaaaagACGTTAAAAGATGTTAAAAAAGAAGTCGAAAACTTGGTCA
AACAAAACCCACCATCCCATCCAACAATAAAATGGCTTTTCGGATTAGTT
CTATCGGAGCTCGGTGAAAAAGGTGAAcactctttttttgaaaaactcta
TTCCATCAAAGACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCA
TCAATTTCCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTC
CTTATTTTCTCGTGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACG
GACACTGACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGA
TAGAGGAGAGGTTGAGTGATCAATTGGGACATGGCTGGACGTACCATCCA
GCCATTTTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACAT
TGACCAAGAAACAGATTTGAAATGTTGGTTATCCATCTTGTTTGCGAAAT
TTCCGACCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGTT
AAAGACCTCCTGAGAATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGC
ACCCATTACGACATCGAACTGGGTTGAGTATATCTCGAAAGCCATCGATA
CCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCC
ATCATGAAGACAAACACTTCTGAATTCAATAAGATCTTCTTTGTTGCCCC
TTACGGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048002-exon-scaffold_14-1491911889:504154..504785 | TCONS_00048002-exon-scaffold_14-1491911889:504154..504785 | Clytia hemisphaerica | exon |
| TCONS_00048002-exon-scaffold_14-1510915933:504154..504785 | TCONS_00048002-exon-scaffold_14-1510915933:504154..504785 | Clytia hemisphaerica | exon |
| TCONS_00048002-exon-scaffold_14-1575043694:504154..504785 | TCONS_00048002-exon-scaffold_14-1575043694:504154..504785 | Clytia hemisphaerica | exon |
| TCONS_00048002-exon-scaffold_14-1491911889:505684..506435 | TCONS_00048002-exon-scaffold_14-1491911889:505684..506435 | Clytia hemisphaerica | exon |
| TCONS_00048002-exon-scaffold_14-1510915933:505684..506435 | TCONS_00048002-exon-scaffold_14-1510915933:505684..506435 | Clytia hemisphaerica | exon |
| TCONS_00048002-exon-scaffold_14-1575043694:505684..506435 | TCONS_00048002-exon-scaffold_14-1575043694:505684..506435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:504154..506435 + |
Blast
The following BLAST results are available for this feature:
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