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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048058 ID=TCONS_00048058|Name=TCONS_00048058|organism=Clytia hemisphaerica|type=transcript|length=1071bp
GAGTGATTgtgttttcaaattcaattgaGGTATTCGAAGCTCGTTTGTGT
TCTGGAACGGCTTGAAGGACTTCCTTTGAATTGCTGTTGTATTTCGTCAG
GTTGAAACCTCGATTTCCCATCAGTATGTCAGATGATTTGATCAGCTCTT
TCCCCTTGTCTTCGTTGGTTACTGATGAGAGGAGATCGTCAACGTAGAAG
TTCCTCAGGAGTGTGCTGATGACATCTGAGGGAGGTTGTCTTTCTGATCA
GTTATTGCTCTTCTAAGGGCGTATGAAGCACAGCACGGTGAACATGTGGC
TCCAAGGATATAAACGAGCATCTTGTATTGATCTGGCTCTTTCTTTGAAT
GTGGATCATCGTGCCAGAGGAACCTCAATGAGTCGGTATCCTTAGGTTTC
AGTCGAACCACATAGAACATTTTCTCTATGTCGGCGACGATGGCTATTTT
GTGTTTCCTGAACCGTAACAATACCCCAAGTAGACTGTTCAGCAAGTCTG
GACCGGTACTAAGACTGGAGTTCAAGCTTTGATTCTTGATGTTTGAAGCT
GCATCGAAGACCATTCTCACCTTCCCTGGCTTATTCTCGTTTATCACTCC
GTGATGGGGAAGGTACCatgatttggttgatttttctttggattCTTCCT
TTGTCAATTTCCTGGCATAGTTGTGGTTAATGTAACCATCtacattttct
ttgtatttgttgaATTAATCTTGGTCTCTTTTGAAGCGTTTATTGAGGTA
AGATAGTCTCTTGGATGCCATTGGTGAGCTGTCAGGAAGTTTCTCATCAG
ACTTCCATAACATGTGTACGATGTAATGGCCGTCTTCGAAGATAGTTTCA
TCTTCTAGGACTTTCAGAAACTTCCTATCCGTCACTGACATTGGTTCCTG
TATGTCGAATTCTGTTCCGAAGGATTCAGTGTCCCAGAATTGTTTGACGA
GATCGTCCAGTCTGTTTTCCTCTTTGTGAACCCTTGGTCTGATGTGTTTG
ATCCATATTGATCCTGACGCACCTCCTTCGTATAATCCGAACATGGTCCA
TCCTAAAGGTGTTTTGGCTGC Run BLAST on NCBI protein sequence of TCONS_00048058-protein >TCONS_00048058-protein ID=TCONS_00048058-protein|Name=TCONS_00048058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MVFDAASNIKNQSLNSSLSTGPDLLNSLLGVLLRFRKHKIAIVADIEKMF
YVVRLKPKDTDSLRFLWHDDPHSKKEPDQYKMLVYILGATCSPCCASYAL
RRAITDQKDNLPQMSSAHS Run BLAST on NCBI transcript from alignment at scaffold_14:41874..42944 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048058 ID=TCONS_00048058|Name=TCONS_00048058|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at scaffold_14:41874..42944 (Clytia hemisphaerica)
GCAGCCAAAACACCTTTAGGATGGACCATGTTCGGATTATACGAAGGAGG
TGCGTCAGGATCAATATGGATCAAACACATCAGACCAAGGGTTCACAAAG
AGGAAAACAGACTGGACGATCTCGTCAAACAATTCTGGGACACTGAATCC
TTCGGAACAGAATTCGACATACAGGAACCAATGTCAGTGACGGATAGGAA
GTTTCTGAAAGTCCTAGAAGATGAAACTATCTTCGAAGACGGCCATTACA
TCGTACACATGTTATGGAAGTCTGATGAGAAACTTCCTGACAGCTCACCA
ATGGCATCCAAGAGACTATCTTACCTCAATAAACGCTTCAAAAGAGACCA
AGATTAATtcaacaaatacaaagaaaatgtaGATGGTTACATTAACCACA
ACTATGCCAGGAAATTGACAAAGGAAGaatccaaagaaaaatcaaccaaa
tcatGGTACCTTCCCCATCACGGAGTGATAAACGAGAATAAGCCAGGGAA
GGTGAGAATGGTCTTCGATGCAGCTTCAAACATCAAGAATCAAAGCTTGA
ACTCCAGTCTTAGTACCGGTCCAGACTTGCTGAACAGTCTACTTGGGGTA
TTGTTACGGTTCAGGAAACACAAAATAGCCATCGTCGCCGACATAGAGAA
AATGTTCTATGTGGTTCGACTGAAACCTAAGGATACCGACTCATTGAGGT
TCCTCTGGCACGATGATCCACATTCAAAGAAAGAGCCAGATCAATACAAG
ATGCTCGTTTATATCCTTGGAGCCACATGTTCACCGTGCTGTGCTTCATA
CGCCCTTAGAAGAGCAATAACTGATCAGAAAGACAACCTCCCTCAGATGT
CATCAGCACACTCCTGAGGAACTTCTACGTTGACGATCTCCTCTCATCAG
TAACCAACGAAGACAAGGGGAAAGAGCTGATCAAATCATCTGACATACTG
ATGGGAAATCGAGGTTTCAACCTGACGAAATACAACAGCAATTCAAAGGA
AGTCCTTCAAGCCGTTCCAGAACACAAACGAGCTTCGAATACCtcaattg
aatttgaaaacacAATCACTC Coding sequence (CDS) from alignment at scaffold_14:41874..42944 >TCONS_00048058 ID=TCONS_00048058|Name=TCONS_00048058|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_14:41874..42944 (Clytia hemisphaerica)
ATGGTCTTCGATGCAGCTTCAAACATCAAGAATCAAAGCTTGAACTCCAG
TCTTAGTACCGGTCCAGACTTGCTGAACAGTCTACTTGGGGTATTGTTAC
GGTTCAGGAAACACAAAATAGCCATCGTCGCCGACATAGAGAAAATGTTC
TATGTGGTTCGACTGAAACCTAAGGATACCGACTCATTGAGGTTCCTCTG
GCACGATGATCCACATTCAAAGAAAGAGCCAGATCAATACAAGATGCTCG
TTTATATCCTTGGAGCCACATGTTCACCGTGCTGTGCTTCATACGCCCTT
AGAAGAGCAATAACTGATCAGAAAGACAACCTCCCTCAGATGTCATCAGC
ACACTCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048058-exon-scaffold_14-1491911889:41874..42944 | TCONS_00048058-exon-scaffold_14-1491911889:41874..42944 | Clytia hemisphaerica | exon |
| TCONS_00048058-exon-scaffold_14-1510915933:41874..42944 | TCONS_00048058-exon-scaffold_14-1510915933:41874..42944 | Clytia hemisphaerica | exon |
| TCONS_00048058-exon-scaffold_14-1575043694:41874..42944 | TCONS_00048058-exon-scaffold_14-1575043694:41874..42944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:41874..42944 . |
Blast
The following BLAST results are available for this feature:
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