TCONS_00004729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004729
Unique NameTCONS_00004729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004729 ID=TCONS_00004729|Name=TCONS_00004729|organism=Clytia hemisphaerica|type=transcript|length=288bp
CATCGTATCTACTCCTAAGACCTGTCTCGGGACCCATAGCGATCATAAAC
GTTCTATGCGTAATGGCGATCCTATGTTAGATTTGGCGGTGGTTTTAGAG
GTGTGGGTTACTTCGTAACCCCTTACACTTATAGTTAGCGGCTAGTTTAG
ATCAAGTACACACTGCCCCTCGGGCACACACAACAAGTCCCCCCGGGACT
TTAAGGTCACGACATACCGTAGTCCCAACGGTATTAAGCTAAGGACACTA
CACTGCCACGCAGTACCCGCTACGAGGTCGCTCACANN
Run BLAST on NCBI

transcript from alignment at sc0000047:809690..809977

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004729 ID=TCONS_00004729|Name=TCONS_00004729|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000047:809690..809977 (Clytia hemisphaerica)
NNTGTGAGCGACCTCGTAGCGGGTACTGCGTGGCAGTGTAGTGTCCTTAG
CTTAATACCGTTGGGACTACGGTATGTCGTGACCTTAAAGTCCCGGGGGG
ACTTGTTGTGTGTGCCCGAGGGGCAGTGTGTACTTGATCTAAACTAGCCG
CTAACTATAAGTGTAAGGGGTTACGAAGTAACCCACACCTCTAAAACCAC
CGCCAAATCTAACATAGGATCGCCATTACGCATAGAACGTTTATGATCGC
TATGGGTCCCGAGACAGGTCTTAGGAGTAGATACGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002677XLOC_002677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004729-exon-sc0000047-1491911889:809690..809977TCONS_00004729-exon-sc0000047-1491911889:809690..809977Clytia hemisphaericaexon
TCONS_00004729-exon-sc0000047-1510915933:809690..809977TCONS_00004729-exon-sc0000047-1510915933:809690..809977Clytia hemisphaericaexon
TCONS_00004729-exon-sc0000047-1575043694:809690..809977TCONS_00004729-exon-sc0000047-1575043694:809690..809977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:809690..809977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.8529	16.1234	12.6492	10.8902	168.133	120.48	123.522	189.327	21.3384	83.8548	31.2389	21.7257	50.5238	47.8398	45.167	81.9652	73.1309	42.5457	23.2766	40.7611	22.467	21.4958	25.6186	30.2783	36.4636	77.5034	47.7942	58.8545	39.1832	36.8895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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