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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047950 ID=TCONS_00047950|Name=TCONS_00047950|organism=Clytia hemisphaerica|type=transcript|length=1236bp
GAAAAGAATTATAGAACTCTGAAAATCAGACTGCAAGAAGCCAAGCTTCG
GTTTcgaagaaaatttcatttttagtcAAATACGCTCATTTCAAAGGAGT
TTTGTTTCTTCATTCGCAGGTTTCCTGTCCACTCTATCTCCTCCTCGTCC
TTCTTCTGCCGTTTCGGTTGCCGGCACTTCGACTTGAGGACTTTTCTCTC
TGTGTCTTCGCTTTCTCCATACAAAGAAACCAATGATCACCAGAGCTAAG
ACGACCACTACTATCGTTACAATGATTACAACCAAAACAGAATGGCTCAA
AAGTACACCTTTCTTCTCGGTGACGTAATCTTGGCATTTGTTTCCATGGA
AACCATTCGAGCATTGACAAATTatgtttgtttcattttgagCGATACAA
AACCCTCCATTTAGACATGTATCTTCTTTCTCGCACGGTTCACACAAAGC
TTGGGTAATTTCAACGTCAGATTGTTTGATCAACTTTTTAAACTGTTTCG
TTATTTTCGAGACAGAACCGTTCTTCCTAATCTCGTCATAACAATCACCA
AAAACTAATTTATTTGAGCTTTTGTACCTGATTAATACGGTTGAGAGCTT
ACAAGAGCATTCAATTGGGTTACTAGCGAGAAGCAGAAACTTTGTTTTAA
GATCTGTCACAGGTAATAATGTGANCAGCGAGAAGCAGAAACTTTGTTTT
GAGATCTGTCACAGGTAATAATGTGATATTGTTGTATTCGAAATTAATGA
CGTCAACGTTAATGTGTTCAAAAGTCTTTGTGTTGATCTGCTGAAGGTTA
TTATTGTATAGATCCAAACGATTTATGGTTGTGACATCACCAAATAAGTT
ATCGGggagattttgaatttgattttggtGGAGAAATATTCTGTTGGTCG
GGTTGTGCATGAATTTGAAAACACCTGCTGTAAGGTTGGTGATTTGGTTC
CTATTTAACATGATGGTGTTGACTGTTTTAGATAGACCACGGAATGCAAA
AGGTGAAATATTCTTGATTCTATTTTCTGTAAGGTGGATTTTCTCTGCCC
TCACCAGATAAACGAAAGTATCCGTTGGTAAAACCTCGATCAAGTTCttg
tttaaaatcaattttttaagaCTTCTTGAATTTGTGAAgtctttttttga
gattttcataattttgttgGCTGTCAAATCTAGATGTTGAAGATGTGGGA
AAATCAAACCCAAGGTTGTTGGATACTTTTTGAACG Run BLAST on NCBI protein sequence of TCONS_00047950-protein >TCONS_00047950-protein ID=TCONS_00047950-protein|Name=TCONS_00047950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
FKKYPTTLGLIFPHLQHLDLTANKIMKISKKDFTNSRSLKKLILNKNLIE
VLPTDTFVYLVRAEKIHLTENRIKNISPFAFRGLSKTVNTIMLNRNQITN
LTAGVFKFMHNPTNRIFLHQNQIQNLPDNLFGDVTTINRLDLYNNNLQQI
NTKTFEHINVDVINFEYNNITLLPVTDLKTKFLLLAXHIITCDRS Run BLAST on NCBI transcript from alignment at scaffold_139:124625..125860 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047950 ID=TCONS_00047950|Name=TCONS_00047950|organism=Clytia hemisphaerica|type=transcript|length=1236bp|location=Sequence derived from alignment at scaffold_139:124625..125860 (Clytia hemisphaerica)
CGTTCAAAAAGTATCCAACAACCTTGGGTTTGATTTTCCCACATCTTCAA
CATCTAGATTTGACAGCcaacaaaattatgaaaatctcaaaaaaagacTT
CACAAATTCAAGAAGtcttaaaaaattgattttaaacaaGAACTTGATCG
AGGTTTTACCAACGGATACTTTCGTTTATCTGGTGAGGGCAGAGAAAATC
CACCTTACAGAAAATAGAATCAAGAATATTTCACCTTTTGCATTCCGTGG
TCTATCTAAAACAGTCAACACCATCATGTTAAATAGGAACCAAATCACCA
ACCTTACAGCAGGTGTTTTCAAATTCATGCACAACCCGACCAACAGAATA
TTTCTCCaccaaaatcaaattcaaaatctccCCGATAACTTATTTGGTGA
TGTCACAACCATAAATCGTTTGGATCTATACAATAATAACCTTCAGCAGA
TCAACACAAAGACTTTTGAACACATTAACGTTGACGTCATTAATTTCGAA
TACAACAATATCACATTATTACCTGTGACAGATCTCAAAACAAAGTTTCT
GCTTCTCGCTGNTCACATTATTACCTGTGACAGATCTTAAAACAAAGTTT
CTGCTTCTCGCTAGTAACCCAATTGAATGCTCTTGTAAGCTCTCAACCGT
ATTAATCAGGTACAAAAGCTCAAATAAATTAGTTTTTGGTGATTGTTATG
ACGAGATTAGGAAGAACGGTTCTGTCTCGAAAATAACGAAACAGTTTAAA
AAGTTGATCAAACAATCTGACGTTGAAATTACCCAAGCTTTGTGTGAACC
GTGCGAGAAAGAAGATACATGTCTAAATGGAGGGTTTTGTATCGctcaaa
atgaaacaaacatAATTTGTCAATGCTCGAATGGTTTCCATGGAAACAAA
TGCCAAGATTACGTCACCGAGAAGAAAGGTGTACTTTTGAGCCATTCTGT
TTTGGTTGTAATCATTGTAACGATAGTAGTGGTCGTCTTAGCTCTGGTGA
TCATTGGTTTCTTTGTATGGAGAAAGCGAAGACACAGAGAGAAAAGTCCT
CAAGTCGAAGTGCCGGCAACCGAAACGGCAGAAGAAGGACGAGGAGGAGA
TAGAGTGGACAGGAAACCTGCGAATGAAGAAACAAAACTCCTTTGAAATG
AGCGTATTTgactaaaaatgaaattttcttcgAAACCGAAGCTTGGCTTC
TTGCAGTCTGATTTTCAGAGTTCTATAATTCTTTTC Coding sequence (CDS) from alignment at scaffold_139:124625..125860 >TCONS_00047950 ID=TCONS_00047950|Name=TCONS_00047950|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_139:124625..125860 (Clytia hemisphaerica)
TTCAAAAAGTATCCAACAACCTTGGGTTTGATTTTCCCACATCTTCAACA
TCTAGATTTGACAGCcaacaaaattatgaaaatctcaaaaaaagacTTCA
CAAATTCAAGAAGtcttaaaaaattgattttaaacaaGAACTTGATCGAG
GTTTTACCAACGGATACTTTCGTTTATCTGGTGAGGGCAGAGAAAATCCA
CCTTACAGAAAATAGAATCAAGAATATTTCACCTTTTGCATTCCGTGGTC
TATCTAAAACAGTCAACACCATCATGTTAAATAGGAACCAAATCACCAAC
CTTACAGCAGGTGTTTTCAAATTCATGCACAACCCGACCAACAGAATATT
TCTCCaccaaaatcaaattcaaaatctccCCGATAACTTATTTGGTGATG
TCACAACCATAAATCGTTTGGATCTATACAATAATAACCTTCAGCAGATC
AACACAAAGACTTTTGAACACATTAACGTTGACGTCATTAATTTCGAATA
CAACAATATCACATTATTACCTGTGACAGATCTCAAAACAAAGTTTCTGC
TTCTCGCTGNTCACATTATTACCTGTGACAGATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047950-exon-scaffold_139-1491911889:124625..125860 | TCONS_00047950-exon-scaffold_139-1491911889:124625..125860 | Clytia hemisphaerica | exon |
| TCONS_00047950-exon-scaffold_139-1510915933:124625..125860 | TCONS_00047950-exon-scaffold_139-1510915933:124625..125860 | Clytia hemisphaerica | exon |
| TCONS_00047950-exon-scaffold_139-1575043694:124625..125860 | TCONS_00047950-exon-scaffold_139-1575043694:124625..125860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:124625..125860 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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