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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047723 ID=TCONS_00047723|Name=TCONS_00047723|organism=Clytia hemisphaerica|type=transcript|length=1003bp
CTCATCTTTGGAAACTATGATGCATTCAAACAAAGTGAAAGAATTTATTG
CTCAAAAGAAGGTCAAGATtgTTTCTGTGGTGCCACCATCAAGTGCGAAG
AAGCCAAAGTTATAATGTCACCCACCCAAAGCAACAAACAAGAAAAAGAC
ACTCTGCCAAGCTCAAAGAAATTTACTCCTCCACCCGAAGCAAAACAGAA
GaaatctttatatatttttccaatttcaagTGCTACAACTATGAACTAAG
TAACGagtttcaatagaccttttttcaaagaggccaccctgttgaataat
catgtagtccagcagaaaaacaatgataaaaccaggcataattattacaa
tatgcatgatacagtaattatgcatggctctatcattgtttttatggctg
gactacataattattcaacaggacgtcctctttgaaaaaaggtctattcc
tgCTCTTCATTCATCATCAACTATCAGACTATATTGTACGTACAAATCAG
CCTGCTAAAAACCTGATGTCACACAACCGCTGAACTTCAAACCGTTCCCC
AAAATTATATAAAGCTCTATCTTCTGGACAACCGCTACTGCTTTAAGTTC
TCAATCCTTTactgaaaaattcttattgACTGGTCATCCTTCAACTTCTT
GGACATTATGTTATAATGTTCCAGAAAATTTGGTTTGATTCTAAAGAGAC
AATCTCCCTTCCTAAAAAGGTGATATTGATATCTTGGAATGCAAAGAAGC
AGAAGAAGGAACACCTGCCAGATATGAAACTCGAGACCTGGtttgcacac
ttttttataagagtgttTTTATTGGTAATGCTAGTAATGGTGAAGCATTC
ATATAGAAATGCAGCTAAATAAGGATGACAGACTGTACACTATGCTCTTa
cagattatttttttctttgtaaataaaGCAGTAATTTTTTATTGGTACCT
ATGTAAACTAggaatgaaattatgaaattatacatttttatcGCAATGTT
AAG Run BLAST on NCBI transcript from alignment at scaffold_135:54741..55943+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047723 ID=TCONS_00047723|Name=TCONS_00047723|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_135:54741..55943+ (Clytia hemisphaerica)
CTCATCTTTGGAAACTATGATGCATTCAAACAAAGTGAAAGAATTTATTG
CTCAAAAGAAGGTCAAGATGTAAGTGTAATTAAATAACCTTTGCtgactt
ttttatcaaaccaaaacaaacagaaagttTCTTTCTGGTTCCttttgtct
gtttgtttttcttctcttttttatcttgctttttatATGCTCTCAAAGTC
CCCAAATACATCCAAAGTAACCTTTACAATGAACAGCATgtaaccatatt
tctttttcatgttttttagtgTTTCTGTGGTGCCACCATCAAGTGCGAAG
AAGCCAAAGTTATAATGTCACCCACCCAAAGCAACAAACAAGAAAAAGAC
ACTCTGCCAAGCTCAAAGAAATTTACTCCTCCACCCGAAGCAAAACAGAA
GaaatctttatatatttttccaatttcaagTGCTACAACTATGAACTAAG
TAACGagtttcaatagaccttttttcaaagaggccaccctgttgaataat
catgtagtccagcagaaaaacaatgataaaaccaggcataattattacaa
tatgcatgatacagtaattatgcatggctctatcattgtttttatggctg
gactacataattattcaacaggacgtcctctttgaaaaaaggtctattcc
tgCTCTTCATTCATCATCAACTATCAGACTATATTGTACGTACAAATCAG
CCTGCTAAAAACCTGATGTCACACAACCGCTGAACTTCAAACCGTTCCCC
AAAATTATATAAAGCTCTATCTTCTGGACAACCGCTACTGCTTTAAGTTC
TCAATCCTTTactgaaaaattcttattgACTGGTCATCCTTCAACTTCTT
GGACATTATGTTATAATGTTCCAGAAAATTTGGTTTGATTCTAAAGAGAC
AATCTCCCTTCCTAAAAAGGTGATATTGATATCTTGGAATGCAAAGAAGC
AGAAGAAGGAACACCTGCCAGATATGAAACTCGAGACCTGGtttgcacac
ttttttataagagtgttTTTATTGGTAATGCTAGTAATGGTGAAGCATTC
ATATAGAAATGCAGCTAAATAAGGATGACAGACTGTACACTATGCTCTTa
cagattatttttttctttgtaaataaaGCAGTAATTTTTTATTGGTACCT
ATGTAAACTAggaatgaaattatgaaattatacatttttatcGCAATGTT
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047723-exon-scaffold_135-1491911889:54741..54809 | TCONS_00047723-exon-scaffold_135-1491911889:54741..54809 | Clytia hemisphaerica | exon |
| TCONS_00047723-exon-scaffold_135-1510915933:54741..54809 | TCONS_00047723-exon-scaffold_135-1510915933:54741..54809 | Clytia hemisphaerica | exon |
| TCONS_00047723-exon-scaffold_135-1575043694:54741..54809 | TCONS_00047723-exon-scaffold_135-1575043694:54741..54809 | Clytia hemisphaerica | exon |
| TCONS_00047723-exon-scaffold_135-1491911889:55010..55943 | TCONS_00047723-exon-scaffold_135-1491911889:55010..55943 | Clytia hemisphaerica | exon |
| TCONS_00047723-exon-scaffold_135-1510915933:55010..55943 | TCONS_00047723-exon-scaffold_135-1510915933:55010..55943 | Clytia hemisphaerica | exon |
| TCONS_00047723-exon-scaffold_135-1575043694:55010..55943 | TCONS_00047723-exon-scaffold_135-1575043694:55010..55943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_135 | supercontig | scaffold_135:54741..55943 + |
Blast
The following BLAST results are available for this feature:
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