TCONS_00047598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047598
Unique NameTCONS_00047598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047598 ID=TCONS_00047598|Name=TCONS_00047598|organism=Clytia hemisphaerica|type=transcript|length=701bp
ctggcatgtaagaggaagccctagaacaaaccttcgcctagttcgaaaac
ctaggacaaagaccaaaacaacgtcttctcttctgtccatatcttctgac
GAATGAAAGAGTTAAGGTCAGTAACTTCATTTTATCCCCCGGTGAAAAGG
TTCTATGTAAACATCCTTACAACACAGTCCGATGGCAAGTTGATGAGGGA
AAACATCAAATTGACAATGACAAGATTCTGAAGGTTAAAGATAAGGAGGT
CTCTTTTGCTGAAGCTGGAAAGGAGTTCTACATGGCAAACTGTGGTGAAG
TAAACAGTAGACAAATTTTATTTGACATTATTCACGAACCAAAATACACA
GAGGAAGAAGTGAAGGACTTACTATCAAAAGCCATTTATCCACCCAATGT
TGGCACTGAACTGTTGTTTGAAAATAGATATTGTCGTGTTTGGGATTTCT
ATTTGGAACCGGATGGGGGAGACCCTTTAAAGAATGCTCATCATCATGTT
TTGGattatgtttttgtttatgtgGCTTGTGGAAGATTATTAGGGTACCA
TCCTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAAG
TCGTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGCC
CATGCTGGTAAAAACGGGTTGAAAAACAAGATAACGTGGACTGGAACATA
A
Run BLAST on NCBI

protein sequence of TCONS_00047598-protein

>TCONS_00047598-protein ID=TCONS_00047598-protein|Name=TCONS_00047598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MANCGEVNSRQILFDIIHEPKYTEEEVKDLLSKAIYPPNVGTELLFENRY
CRVWDFYLEPDGGDPLKNAHHHVLDYVFVYVACGRLLGYHPDGRPGLFDS
VMENNEVVWEEIPSTAAENVEYAHAGKNGLKNKITWTGT
Run BLAST on NCBI

transcript from alignment at scaffold_132:186781..188754-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047598 ID=TCONS_00047598|Name=TCONS_00047598|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at scaffold_132:186781..188754- (Clytia hemisphaerica)
CTGGCATGTAAGAGGAAGCCCTAGAACAAACCTTCGCCTAGTTCGAAAAC
CTAGGACAAAGACCAAAACAACGTCTTCTCTTCTGTCCATATCTTCTGAC
GAATGAAAGAGTTAAGGTCAGTAACTTCATTTTATCCCCCGGTGAAAAGG
TTCTATGTAAACATCCTTACAACACAGTCCGATGGCAAGTTGATGAGGGA
AAACATCAAATTGACAATGACAAGATTCTGAAGGTTAAAGATAAGGAGGT
ATTATTGGGAATTTGTTTGTCTTTTAACTATTTATAATAACTTTTAAAAT
CAGTTAATTTGGCAAAAATAAACCTTACTTGGTTCAAATCATGCATGTTG
ATTGTTGTGTTTTTTATCCCTTTGCCAAAGGGTATAATTTGTGTATCCTG
TTCATTTANGCATGTTGTGTTTTTTATCCCTTCGCCAAAGGGTAGAATTT
GTGTATCCTGTTCATTTATTGACCCAGCATTTGACAAATTTGGAACCACC
TTAAATCTCCTTTGTCGTCCTTTGCTACTTTTCATGCCTTTTTAGTGTCC
AGTTCTTGGACACTGCCCCAATCCCCGAATTTGTGTTTAAAATAGTGTTT
TTAACAGTGAAAAACTGCATTTTTTTAGCCATTACAATATCGCTTTTTAC
CATAGAATTATTCTTTATTCAGGTCTCTTTTGCTGAAGCTGGAAAGGAGT
TCTACATGGCAAACTGTGGTGAAGTAAACAGTAGACAAATTTTATTTGAC
ATTATTCACGAACCAAAATACACAGAGGAAGAAGTGAAGGACTTACTATC
AAAAGCCATTTATCCACCCAATGTTGGCACTGAACTGTTGTTTGAAAATA
GGTAAAAGCGCTTAAGTTTTGAGTTCTTTGGCGTGAGGAATAAGTGTCAT
CATTAAATGCTGGAATTATTTGTAGAATAGCTTAGTTAAAGTTGATTGTT
ATAAATTAATCCTTTAATCCTTAATATTCTTTAGATATTGTCGTGTTTGG
GATTTCTATTTGGAACCGGATGGGGGAGACCCTTTAAAGAATGCTCATCA
TCATGTTTTGGATTATGTTTTTGTTTATGTGGCTTGTGGAAGATTATTAG
GTAATAGAAGGGAAAGGGATTAGAATTTTCCTAATTCGTTGCTGCCCTTT
TATACACTTCATATAGTTTCATAATACTTTTGATTTGACAGTGTGATATA
TTTTTATCTAAAGAGGGAGAGGATGTTTAGCAAAAGTGTACGTCTATTGT
TTGAAAGACTTAATTTCCATTATTCTCTGCATACAAGGTGGAGGGGTGTC
AAATATTTGGAAGTTTTTTGCGTACATACGACATGGATGACCTAAACAAG
ATTTAAATTAGGAGGTGTATGAGAAAAGAAAACAGGAACAATGAATGGCT
ATACATGTTGTATTTACATTGAATCTACTTATTGCTTCTAGGGTACCATC
CTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAAGTC
GTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGCCCA
TGCTGGTAAAAACGGGTATAAAGATAAACCCATGCGAGAATATCTGCTAG
AATTGAAATGAAATGTAGATGGATGTATAAAGGATAAAATTAACATTTTT
TTGGTTTTTATAGCGCTTCTGTCCTGAGAAATTGAAGTTGATTTACTGGT
GAGAAGAGGAAATATCTGATGGAATTGAAATAAAGTTGTAATTGGGCTGA
TAGGAAAGAGGGATCAACTTGTTGAATGTCTAGAAAGTCATCCTTTATGG
GAAGTTGAAATTCCAATCAAAATAATGCTGTACATAGAATAATTGAGAGA
TTGCCTCTTAATTTAGACTGCCCTTGAAATTATTCTTTATATTTAAAATA
TCTTAAGAATTATCTTTCACAATCTATTTTTCTCTCTTAGGTTGAAAAAC
AAGATAACGTGGACTGGAACATAA

Coding sequence (CDS) from alignment at scaffold_132:186781..188754-

>TCONS_00047598 ID=TCONS_00047598|Name=TCONS_00047598|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_132:186781..188754- (Clytia hemisphaerica)
GTTGAAAAACAAGATAACGTGGACTGGAACATAAGGTACCATCCTGATGG
CAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAAGTCGTCTGGG
AAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGCCCATGCTGGT
AAAAACGGATATTGTCGTGTTTGGGATTTCTATTTGGAACCGGATGGGGG
AGACCCTTTAAAGAATGCTCATCATCATGTTTTGGATTATGTTTTTGTTT
ATGTGGCTTGTGGAAGATTATTAGATGGCAAACTGTGGTGAAGTAAACAG
TAGACAAATTTTATTTGACATTATTCACGAACCAAAATACACAGAGGAAG
AAGTGAAGGACTTACTATCAAAAGCCATTTATCCACCCAATGTTGGCACT
GAACTGTTGTTTGAAAATAGGTTGAAAAACAAGATAACGTGGACTGGAAC
ATAAGGTACCATCCTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGA
GAACAATGAAGTCGTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATG
TAGAATATGCCCATGCTGGTAAAAACGGATATTGTCGTGTTTGGGATTTC
TATTTGGAACCGGATGGGGGAGACCCTTTAAAGAATGCTCATCATCATGT
TTTGGATTATGTTTTTGTTTATGTGGCTTGTGGAAGATTATTAGATGGCA
AACTGTGGTGAAGTAAACAGTAGACAAATTTTATTTGACATTATTCACGA
ACCAAAATACACAGAGGAAGAAGTGAAGGACTTACTATCAAAAGCCATTT
ATCCACCCAATGTTGGCACTGAACTGTTGTTTGAAAATAGGTTGAAAAAC
AAGATAACGTGGACTGGAACATAAGGTACCATCCTGATGGCAGACCAGGA
TTGTTTGATTCTGTTATGGAGAACAATGAAGTCGTCTGGGAAGAAATTCC
TTCCACAGCTGCTGAGAATGTAGAATATGCCCATGCTGGTAAAAACGGAT
ATTGTCGTGTTTGGGATTTCTATTTGGAACCGGATGGGGGAGACCCTTTA
AAGAATGCTCATCATCATGTTTTGGATTATGTTTTTGTTTATGTGGCTTG
TGGAAGATTATTAGATGGCAAACTGTGGTGAAGTAAACAGTAGACAAATT
TTATTTGACATTATTCACGAACCAAAATACACAGAGGAAGAAGTGAAGGA
CTTACTATCAAAAGCCATTTATCCACCCAATGTTGGCACTGAACTGTTGT
TTGAAAATAGGTTGAAAAACAAGATAACGTGGACTGGAACATAAGGTACC
ATCCTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAA
GTCGTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGC
CCATGCTGGTAAAAACGGATATTGTCGTGTTTGGGATTTCTATTTGGAAC
CGGATGGGGGAGACCCTTTAAAGAATGCTCATCATCATGTTTTGGATTAT
GTTTTTGTTTATGTGGCTTGTGGAAGATTATTAGATGGCAAACTGTGGTG
AAGTAAACAGTAGACAAATTTTATTTGACATTATTCACGAACCAAAATAC
ACAGAGGAAGAAGTGAAGGACTTACTATCAAAAGCCATTTATCCACCCAA
TGTTGGCACTGAACTGTTGTTTGAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030313XLOC_030313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047598-exon-scaffold_132-1575043694:188507..188754TCONS_00047598-exon-scaffold_132-1575043694:188507..188754Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1575043694:187904..188082TCONS_00047598-exon-scaffold_132-1575043694:187904..188082Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1575043694:187655..187770TCONS_00047598-exon-scaffold_132-1575043694:187655..187770Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1575043694:187190..187313TCONS_00047598-exon-scaffold_132-1575043694:187190..187313Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1575043694:186781..186814TCONS_00047598-exon-scaffold_132-1575043694:186781..186814Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1510915933:188507..188754TCONS_00047598-exon-scaffold_132-1510915933:188507..188754Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1510915933:187904..188082TCONS_00047598-exon-scaffold_132-1510915933:187904..188082Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1510915933:187655..187770TCONS_00047598-exon-scaffold_132-1510915933:187655..187770Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1510915933:187190..187313TCONS_00047598-exon-scaffold_132-1510915933:187190..187313Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1510915933:186781..186814TCONS_00047598-exon-scaffold_132-1510915933:186781..186814Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1491911889:188507..188754TCONS_00047598-exon-scaffold_132-1491911889:188507..188754Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1491911889:187904..188082TCONS_00047598-exon-scaffold_132-1491911889:187904..188082Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1491911889:187655..187770TCONS_00047598-exon-scaffold_132-1491911889:187655..187770Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1491911889:187190..187313TCONS_00047598-exon-scaffold_132-1491911889:187190..187313Clytia hemisphaericaexon
TCONS_00047598-exon-scaffold_132-1491911889:186781..186814TCONS_00047598-exon-scaffold_132-1491911889:186781..186814Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047598-proteinTCONS_00047598-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:186781..188754 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.48272	6.36241	9.97805	9.6314	8.2208	6.44742	9.87695	8.88282	2.70521	4.80264	0.509989	2.26915	3.73147	3.04094	5.23951	7.37285	4.82505	5.45554	5.71365	5.01637	5.3228	3.43925	5.06409	6.64652	12.4841	13.3834	10.6064	9.17037	7.71882	5.52929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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