|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047526 ID=TCONS_00047526|Name=TCONS_00047526|organism=Clytia hemisphaerica|type=transcript|length=1874bpRun BLAST on NCBI protein sequence of TCONS_00047526-protein >TCONS_00047526-protein ID=TCONS_00047526-protein|Name=TCONS_00047526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp MLRRTTQRLLEHFEVATKAGCIRNFHMSPDGEPDRGPLDGVRVLDMSRVLRun BLAST on NCBI transcript from alignment at scaffold_131:147291..153656+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047526 ID=TCONS_00047526|Name=TCONS_00047526|organism=Clytia hemisphaerica|type=transcript|length=6366bp|location=Sequence derived from alignment at scaffold_131:147291..153656+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_131:147291..153656+ >TCONS_00047526 ID=TCONS_00047526|Name=TCONS_00047526|organism=Clytia hemisphaerica|type=CDS|length=16128bp|location=Sequence derived from alignment at scaffold_131:147291..153656+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047526 vs. Swiss-Prot (Human)
Match: SUCHY (Succinate--hydroxymethylglutarate CoA-transferase OS=Homo sapiens GN=SUGCT PE=1 SV=2) HSP 1 Score: 421.779 bits (1083), Expect = 5.338e-141 Identity = 209/401 (52.12%), Postives = 281/401 (70.07%), Query Frame = 3
Query: 171 PLDGVRVLDMSRVLAGPYCTQLLGDMGAEVIKIERPGSGDDTRAWGPPFVGGESCYYLSINRNKRSIVVDVKTEDGKQIIYDLAKRSDVFVENFQRGKIEKMGFGYEKLKTLNKRLVYASISGFGAHGPDHEKPGYDMVASAVGGLMSITGPAEGRPAVAGASITDIMSGMYANGAICAALYERRSTNRGKRIHCSLLQTQVAYLCHIAANYLNTGVVGKRHGSAHGSIVPYQAFETGDDHEIVVAGANDKFFKIMCEVLGLSELVEDSRFHTNAKRVINREELIPLLQAKLKEQPSLYWIEHFQRAGVPCGRVNNMDDVFDMPQVKALGIVQSIPHPTAGRIKVPGPAVEYDGISQLALARHPPLMGEHTIEILKDVLHYEETKIEELLTNNVVMEGGAH 1373
PL+GV++LD++RVLAGP+ T LGD+GAEVIK+ERPG+GDDTR WGPPFVG ES YYLS+NRNK+SI V++K G +II +LA DVFVEN+ GK+ MG GYE + + ++Y SI+G+G GP ++ GYD VASAV GLM ITGP G P G ++TD+ +G+YA GAI A L ++ T +G I C+LL +QVA L HIAANYL KR G+AHGSIVPYQAF+T D + IVV N++ F +C++L L EL+++S++ TN RV NR+ELI +L + +E+ + W+ F+ +GVP G +NNM +VF PQV G+V + HPT G+I VPGPAV Y +++ AR PPL+G+HT ILK+VL Y++ I ELL+ VV + H
Sbjct: 47 PLEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSAMGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGLYAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGY-IVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQVLHNGLVMEMEHPTVGKISVPGPAVRYSKF-KMSEARPPPLLGQHTTHILKEVLRYDDRAIGELLSAGVVDQHETH 445 The following BLAST results are available for this feature:
BLAST of TCONS_00047526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.