TCONS_00047493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047493
Unique NameTCONS_00047493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047493 ID=TCONS_00047493|Name=TCONS_00047493|organism=Clytia hemisphaerica|type=transcript|length=1852bp
cccacgtagggtccatttttcgaacctcagcggagcacccccgtcggtcg
acaagggtagtaccccccccggggaatCATTTGCGTTCTTTCAGCGTGTT
AAAAAAAGGTGAGGGAGTGGTCGTCAGATTTTCTTTGGAGGTAGATTGTG
GTGTGTAAATGCTGGATTTGGTATTGGTCTGACTGGGGGTTGCCATAGTA
TCTATTTCTGGTGTTCGCTGGTCAATGGTGGTTCGGACTGTCATTTTCTA
GGATTGTTGCAATTTGAGATTGTGGGTTCTTGTATAGTGTTTTGGATTTC
GTCTTTTGCGTGTTGGTTGTTGAGTGGTGGCtgcaatgccggacaaaagg
ttgtagacaaatgaaatttcagtgaaaaatgatgagaaatagagcataat
gactcttcaatgtgtctgaaagggatggaagttaagaaaaacacttttga
agtcgttgcattgcttttgaattgcttttgagggaaccacaagcaaaaaa
ccagcgttttgatactggtgtaaaccagttaatcaagcccttgtggtttg
cccttgaggttagactttcaaagactttgaacagctttggataggtttgg
aaagcacccagagcctcttgggaacttgtctttgatcgatattgaagtat
ttagcaaatattgcagaagtctacaaaccttttgtccagcattgtgaGGG
TTGCTATATTGAGCCATGTATTGtcgatttttgtttttttctgaggaTTG
TGTGGTATGGATCTTCGTTTAAGTGGGTATTGTCATGGCTCCCTTCTCCT
TTCTTTTGAAGTAGATTGTGGTTGTGGTAGATTGTGGATGTATTGGTTCT
TTATACGAGGCTGTCTCCTCTTCGTTTTGAATTGGATTTGGATTTGGATT
TGGATTGGGGTTTGATTTGGGATGGACAAGTTTGGCCTTCTTTatgcaaa
taaaatttttaattgctTCTACTCCATTTTTAAGATTCAGTACCAGATGT
TTGATCTCTTCATttgatttcttaaaaaataagtTAGCTCGTTGGTCCCA
GCATGAAGTTAAAAACGACGCGGACTTCATGGTCGGATTTGTTTTCGGTT
TTATAGTACTCTCCTTCAGGTTGCTAAATTGATTGAAGTAGCGTAGCGAT
CGTAAAAATGACTCAGTATGAAATTAAACATGTTACAAAGGTGAGGCTCT
GACCTGCCAAACTTACCTGCATGGAAGTGCAAGTCTTCGACACAACAAGC
AAAAGAGCTCAACAATACTAGTGTGAATGTAGGCTGGCCTAGGCAAAATC
ACCTCATCGCCAAGCCCAAGCATGGCAGCAATCCTTAGCATATCCCTCTT
TCGGAATCTGCAGTCCACCCAGCATTCTTTATCACTCCACAAGTCGAAAT
TGAAGTTTCCCCACCTAGCACCATAGTCCTTATCAACTGCACCTACAAAA
TTTACCTCTGTAACATCAGCCAGCATGAGGTATTCTTCATCAGAAATAAC
TCCATTTACATATGCATCTCTTCCAGCCATGATAACCTAATTAAAACTTT
TCACTTACTGCTTTCAAAGTCGAAAGAATAAAGTCTCAAAGAAGAGGGAG
GGAGGGTAAACAACTTGCTCTCAATGGGGTCACCCTGCGTGTTGCCTTCG
GATCATAGAATTTCGACACCACCGAGGACGAAGAGTCTGGACGGCGTATT
ATAGCAATTCGAGGCAAGTGTTGCTATTGAGGGGCAGATGACTTTTACGT
TGTGTAAGAATGCTTCACGGTTGAAATCCCGGTAAAATGTGTAAAATGGG
AATAACTCGCGAAAAAAATAGattgtcaaaaaaatgaaactgaagttgag
aa
Run BLAST on NCBI

protein sequence of TCONS_00047493-protein

>TCONS_00047493-protein ID=TCONS_00047493-protein|Name=TCONS_00047493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MAGRDAYVNGVISDEEYLMLADVTEVNFVGAVDKDYGARWGNFNFDLWSD
KECWVDCRFRKRDMLRIAAMLGLGDEVILPRPAYIHTSIVELFCLLCRRL
ALPCR
Run BLAST on NCBI

transcript from alignment at scaffold_13:176721..178572-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047493 ID=TCONS_00047493|Name=TCONS_00047493|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at scaffold_13:176721..178572- (Clytia hemisphaerica)
CCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCCGTCGGTCG
ACAAGGGTAGTACCCCCCCCGGGGAATCATTTGCGTTCTTTCAGCGTGTT
AAAAAAAGGTGAGGGAGTGGTCGTCAGATTTTCTTTGGAGGTAGATTGTG
GTGTGTAAATGCTGGATTTGGTATTGGTCTGACTGGGGGTTGCCATAGTA
TCTATTTCTGGTGTTCGCTGGTCAATGGTGGTTCGGACTGTCATTTTCTA
GGATTGTTGCAATTTGAGATTGTGGGTTCTTGTATAGTGTTTTGGATTTC
GTCTTTTGCGTGTTGGTTGTTGAGTGGTGGCTGCAATGCCGGACAAAAGG
TTGTAGACAAATGAAATTTCAGTGAAAAATGATGAGAAATAGAGCATAAT
GACTCTTCAATGTGTCTGAAAGGGATGGAAGTTAAGAAAAACACTTTTGA
AGTCGTTGCATTGCTTTTGAATTGCTTTTGAGGGAACCACAAGCAAAAAA
CCAGCGTTTTGATACTGGTGTAAACCAGTTAATCAAGCCCTTGTGGTTTG
CCCTTGAGGTTAGACTTTCAAAGACTTTGAACAGCTTTGGATAGGTTTGG
AAAGCACCCAGAGCCTCTTGGGAACTTGTCTTTGATCGATATTGAAGTAT
TTAGCAAATATTGCAGAAGTCTACAAACCTTTTGTCCAGCATTGTGAGGG
TTGCTATATTGAGCCATGTATTGTCGATTTTTGTTTTTTTCTGAGGATTG
TGTGGTATGGATCTTCGTTTAAGTGGGTATTGTCATGGCTCCCTTCTCCT
TTCTTTTGAAGTAGATTGTGGTTGTGGTAGATTGTGGATGTATTGGTTCT
TTATACGAGGCTGTCTCCTCTTCGTTTTGAATTGGATTTGGATTTGGATT
TGGATTGGGGTTTGATTTGGGATGGACAAGTTTGGCCTTCTTTATGCAAA
TAAAATTTTTAATTGCTTCTACTCCATTTTTAAGATTCAGTACCAGATGT
TTGATCTCTTCATTTGATTTCTTAAAAAATAAGTTAGCTCGTTGGTCCCA
GCATGAAGTTAAAAACGACGCGGACTTCATGGTCGGATTTGTTTTCGGTT
TTATAGTACTCTCCTTCAGGTTGCTAAATTGATTGAAGTAGCGTAGCGAT
CGTAAAAATGACTCAGTATGAAATTAAACATGTTACAAAGGTGAGGCTCT
GACCTGCCAAACTTACCTGCATGGAAGTGCAAGTCTTCGACACAACAAGC
AAAAGAGCTCAACAATACTAGTGTGAATGTAGGCTGGCCTAGGCAAAATC
ACCTCATCGCCAAGCCCAAGCATGGCAGCAATCCTTAGCATATCCCTCTT
TCGGAATCTGCAGTCCACCCAGCATTCTTTATCACTCCACAAGTCGAAAT
TGAAGTTTCCCCACCTAGCACCATAGTCCTTATCAACTGCACCTACAAAA
TTTACCTCTGTAACATCAGCCAGCATGAGGTATTCTTCATCAGAAATAAC
TCCATTTACATATGCATCTCTTCCAGCCATGATAACCTAATTAAAACTTT
TCACTTACTGCTTTCAAAGTCGAAAGAATAAAGTCTCAAAGAAGAGGGAG
GGAGGGTAAACAACTTGCTCTCAATGGGGTCACCCTGCGTGTTGCCTTCG
GATCATAGAATTTCGACACCACCGAGGACGAAGAGTCTGGACGGCGTATT
ATAGCAATTCGAGGCAAGTGTTGCTATTGAGGGGCAGATGACTTTTACGT
TGTGTAAGAATGCTTCACGGTTGAAATCCCGGTAAAATGTGTAAAATGGG
AATAACTCGCGAAAAAAATAGATTGTCAAAAAAATGAAACTGAAGTTGAG
AA

Coding sequence (CDS) from alignment at scaffold_13:176721..178572-

>TCONS_00047493 ID=TCONS_00047493|Name=TCONS_00047493|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_13:176721..178572- (Clytia hemisphaerica)
TTACCTGCATGGAAGTGCAAGTCTTCGACACAACAAGCAAAAGAGCTCAA
CAATACTAGTGTGAATGTAGGCTGGCCTAGGCAAAATCACCTCATCGCCA
AGCCCAAGCATGGCAGCAATCCTTAGCATATCCCTCTTTCGGAATCTGCA
GTCCACCCAGCATTCTTTATCACTCCACAAGTCGAAATTGAAGTTTCCCC
ACCTAGCACCATAGTCCTTATCAACTGCACCTACAAAATTTACCTCTGTA
ACATCAGCCAGCATGAGGTATTCTTCATCAGAAATAACTCCATTTACATA
TGCATCTCTTCCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030249XLOC_030249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047493-proteinTCONS_00047493-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047493-exon-scaffold_13-1575043694:176721..178572TCONS_00047493-exon-scaffold_13-1575043694:176721..178572Clytia hemisphaericaexon
TCONS_00047493-exon-scaffold_13-1510915933:176721..178572TCONS_00047493-exon-scaffold_13-1510915933:176721..178572Clytia hemisphaericaexon
TCONS_00047493-exon-scaffold_13-1491911889:176721..178572TCONS_00047493-exon-scaffold_13-1491911889:176721..178572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:176721..178572 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.567223	0.336054	0.70851	0.607317	1.02604	0.593811	0.937021	1.21088	0.802109	0.591295	0.507881	0.606955	0.390122	0.335956	0.592559	0.464784	0.479365	0.286634	0.846407	0.706818	0.598783	0.612701	0.478509	0.634123	0.783237	0.912494	1.43455	2.26781	2.06666	2.23942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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