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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004713 ID=TCONS_00004713|Name=TCONS_00004713|organism=Clytia hemisphaerica|type=transcript|length=1604bp
CCCCAGTAAGGCCCTATATTCTCGCAGAAATACCATCTTATACTTTAAGT
GTAAATTAAATTTCTGACcctttcctaaaaataaagagtatttttattaa
aaaaatgtatttcttTTAACACCTACAGTATGGCGAATAAtttatcttca
ctatatatgatcattttgataaaaacttccCCTCGTTGGTTGGTAGGTCT
TCATCGATTCAACCATGACCAATTCTACATTAGAGAGTTTTGAAAAGAGC
ACTCAAGAAAAGGGNATTGGTTGGTAGGTCTTCGTCGATTCAACCATGGC
CAATTCTACATTAGAGAGTTTTGAAAAGAGCACTCAAGAAAAGGGTGACG
AATTTTTATTCGCGAAGGTGTTTATTGCACTTGAAATTATGACTTTGGTC
TTGCACGCTATTTTACAATGGGTCATTTTCAAACTTAACGTAAATGAAAA
TCACTATCATTTGATTCGGGTGCTGTCTATCTTTGATTCAATACACGCTA
CTTTTGTGATTTGTCAGGCTTTTTACTTTATGGGTGTGGCCCTCGACAAA
AGTCTACCTAACCAGACAGTAATGGTTTTGATGACAATGTCTGTATACAT
TTTTCATGCCTCGTCAATGCTTATCACTGTCTTGATAGCCACCGACCGAT
GGATAGCTGTCAAATACCCTTTACGATATCAAGAAATCGTCTCCAAACTT
AGAATCAACATTGCTGTGTCTATTTCAGGGATTTTTTGTGCAGTTTCTTT
GAGTTGCTTGTTTTTCACTCTTGATATAAGAAGAGTATTAACACTATTCA
TAAATCGCGGTATTTTTTCGTTCCTCTTTATTTTACGAACAGTCACCTGT
GTTGCCATACTTGTACTGGGAAAATTAACAATTCGTTTGCGTGATGAGAG
CGAAGCAAACAGACCACATACAGAAAACCTTCACGGTGTAGAAGCAGAAA
GGTTGGAAGTAATTATCAAGTTGAAAAGAAGTGTCAAAGATGTTATGAAA
CTGAATATCTGGACTTGCGTctttcttttacctatgatgttTTGCTCATT
GAGTTTTCTTGTGACAGACGGATCCGAGCTAGGCATCAGATTGGATGCCT
TTTTTGGATTGGTTAATGTTATTTCGAATCCTATTGTGTATTTAACAAGT
TTTTCTAAAATACGACAATATTGGTATCGTAAATTTTTCCAAAGATGGAC
GATTCATCCTGAAAGAGATGAATGATAAACAAAAATACCTTTATGTTTAG
TTTGCATAGAGTCTATTTTATACGTCGATAAAATCCGCTGTCTAGGGCTT
TTACTTTGTATCTGCGGCATTTTGGGCATTTCAGTTTtttaacataactt
ttgattgtcTTCAACTGATTTTAAAGTTtcatataccaaaatttaagtta
aacttTCCTCtataatgaaataaaatctttaaccgtaagctcacaatatc
ttgacaaacctGTATATTTTTCTTAGCACACCCGGTATGAGCGAAATGGG
GCATTGGAAGGAGTGGGGATTTGAATCGGGAGTTTCTGGATACTTACATT
CATAAATATTTATACTAAATGATTAATAGGTAGATTGCCTTAAACCTAAA
CCTA Run BLAST on NCBI protein sequence of TCONS_00004713-protein >TCONS_00004713-protein ID=TCONS_00004713-protein|Name=TCONS_00004713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MANSTLESFEKSTQEKGDEFLFAKVFIALEIMTLVLHAILQWVIFKLNVN
ENHYHLIRVLSIFDSIHATFVICQAFYFMGVALDKSLPNQTVMVLMTMSV
YIFHASSMLITVLIATDRWIAVKYPLRYQEIVSKLRINIAVSISGIFCAV
SLSCLFFTLDIRRVLTLFINRGIFSFLFILRTVTCVAILVLGKLTIRLRD
ESEANRPHTENLHGVEAERLEVIIKLKRSVKDVMKLNIWTCVFLLPMMFC
SLSFLVTDGSELGIRLDAFFGLVNVISNPIVYLTSFSKIRQYWYRKFFQR
WTIHPERDE Run BLAST on NCBI transcript from alignment at sc0000047:435377..436980 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004713 ID=TCONS_00004713|Name=TCONS_00004713|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at sc0000047:435377..436980 (Clytia hemisphaerica)
TAGGTTTAGGTTTAAGGCAATCTACCTATTAATCATTTAGTATAAATATT
TATGAATGTAAGTATCCAGAAACTCCCGATTCAAATCCCCACTCCTTCCA
ATGCCCCATTTCGCTCATACCGGGTGTGCTAAGAAAAATATACaggtttg
tcaagatattgtgagcttacggttaaagattttatttcattataGAGGAa
agtttaacttaaattttggtatatgaAACTTTAAAATCAGTTGAAgacaa
tcaaaagttatgttaaaAAACTGAAATGCCCAAAATGCCGCAGATACAAA
GTAAAAGCCCTAGACAGCGGATTTTATCGACGTATAAAATAGACTCTATG
CAAACTAAACATAAAGGTATTTTTGTTTATCATTCATCTCTTTCAGGATG
AATCGTCCATCTTTGGAAAAATTTACGATACCAATATTGTCGTATTTTAG
AAAAACTTGTTAAATACACAATAGGATTCGAAATAACATTAACCAATCCA
AAAAAGGCATCCAATCTGATGCCTAGCTCGGATCCGTCTGTCACAAGAAA
ACTCAATGAGCAAaacatcataggtaaaagaaagACGCAAGTCCAGATAT
TCAGTTTCATAACATCTTTGACACTTCTTTTCAACTTGATAATTACTTCC
AACCTTTCTGCTTCTACACCGTGAAGGTTTTCTGTATGTGGTCTGTTTGC
TTCGCTCTCATCACGCAAACGAATTGTTAATTTTCCCAGTACAAGTATGG
CAACACAGGTGACTGTTCGTAAAATAAAGAGGAACGAAAAAATACCGCGA
TTTATGAATAGTGTTAATACTCTTCTTATATCAAGAGTGAAAAACAAGCA
ACTCAAAGAAACTGCACAAAAAATCCCTGAAATAGACACAGCAATGTTGA
TTCTAAGTTTGGAGACGATTTCTTGATATCGTAAAGGGTATTTGACAGCT
ATCCATCGGTCGGTGGCTATCAAGACAGTGATAAGCATTGACGAGGCATG
AAAAATGTATACAGACATTGTCATCAAAACCATTACTGTCTGGTTAGGTA
GACTTTTGTCGAGGGCCACACCCATAAAGTAAAAAGCCTGACAAATCACA
AAAGTAGCGTGTATTGAATCAAAGATAGACAGCACCCGAATCAAATGATA
GTGATTTTCATTTACGTTAAGTTTGAAAATGACCCATTGTAAAATAGCGT
GCAAGACCAAAGTCATAATTTCAAGTGCAATAAACACCTTCGCGAATAAA
AATTCGTCACCCTTTTCTTGAGTGCTCTTTTCAAAACTCTCTAATGTAGA
ATTGGCCATGGTTGAATCGACGAAGACCTACCAACCAATNCCCTTTTCTT
GAGTGCTCTTTTCAAAACTCTCTAATGTAGAATTGGTCATGGTTGAATCG
ATGAAGACCTACCAACCAACGAGGggaagtttttatcaaaatgatcatat
atagtgaagataaaTTATTCGCCATACTGTAGGTGTTAAaagaaatacat
ttttttaataaaaatactctttatttttaggaaaggGTCAGAAATTTAAT
TTACACTTAAAGTATAAGATGGTATTTCTGCGAGAATATAGGGCCTTACT
GGGG Coding sequence (CDS) from alignment at sc0000047:435377..436980 >TCONS_00004713 ID=TCONS_00004713|Name=TCONS_00004713|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000047:435377..436980 (Clytia hemisphaerica)
TCATTCATCTCTTTCAGGATGAATCGTCCATCTTTGGAAAAATTTACGAT
ACCAATATTGTCGTATTTTAGAAAAACTTGTTAAATACACAATAGGATTC
GAAATAACATTAACCAATCCAAAAAAGGCATCCAATCTGATGCCTAGCTC
GGATCCGTCTGTCACAAGAAAACTCAATGAGCAAaacatcataggtaaaa
gaaagACGCAAGTCCAGATATTCAGTTTCATAACATCTTTGACACTTCTT
TTCAACTTGATAATTACTTCCAACCTTTCTGCTTCTACACCGTGAAGGTT
TTCTGTATGTGGTCTGTTTGCTTCGCTCTCATCACGCAAACGAATTGTTA
ATTTTCCCAGTACAAGTATGGCAACACAGGTGACTGTTCGTAAAATAAAG
AGGAACGAAAAAATACCGCGATTTATGAATAGTGTTAATACTCTTCTTAT
ATCAAGAGTGAAAAACAAGCAACTCAAAGAAACTGCACAAAAAATCCCTG
AAATAGACACAGCAATGTTGATTCTAAGTTTGGAGACGATTTCTTGATAT
CGTAAAGGGTATTTGACAGCTATCCATCGGTCGGTGGCTATCAAGACAGT
GATAAGCATTGACGAGGCATGAAAAATGTATACAGACATTGTCATCAAAA
CCATTACTGTCTGGTTAGGTAGACTTTTGTCGAGGGCCACACCCATAAAG
TAAAAAGCCTGACAAATCACAAAAGTAGCGTGTATTGAATCAAAGATAGA
CAGCACCCGAATCAAATGATAGTGATTTTCATTTACGTTAAGTTTGAAAA
TGACCCATTGTAAAATAGCGTGCAAGACCAAAGTCATAATTTCAAGTGCA
ATAAACACCTTCGCGAATAAAAATTCGTCACCCTTTTCTTGAGTGCTCTT
TTCAAAACTCTCTAATGTAGAATTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004713-exon-sc0000047-1491911889:435377..436980 | TCONS_00004713-exon-sc0000047-1491911889:435377..436980 | Clytia hemisphaerica | exon |
| TCONS_00004713-exon-sc0000047-1510915933:435377..436980 | TCONS_00004713-exon-sc0000047-1510915933:435377..436980 | Clytia hemisphaerica | exon |
| TCONS_00004713-exon-sc0000047-1575043694:435377..436980 | TCONS_00004713-exon-sc0000047-1575043694:435377..436980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:435377..436980 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019430 | 7TM_GPCR_serpentine_rcpt_Srx |
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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