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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047309 ID=TCONS_00047309|Name=TCONS_00047309|organism=Clytia hemisphaerica|type=transcript|length=444bp
GGATTCTGGCTATTCTGCAGCAATGTTTTGATAATGGTTGATAGATTCAT
GGAAGTTTATCTCAATATCAGgTACAGTGTTTACTGGTCAGAGAAGCGCT
CAAAGATCGTTGTCTATATCAGTACGCTAATGGCATTTTCTTTGGGATGC
ATTTTCGCTTATTTCAATACAGAACTTAGCGAAGTTATTTTCTACATATG
GATTGTATTAGATCATTTACATGTCGTAGTTGCGATGATTGCTTACGGGT
ATCTATTTACAAAGTTACGCGACAATAGACGTAGAACAGCTCGCGTGAGT
GCTGTCGTAACCACTAACAACAATAATCTTGACGTCCCAGGAGAGCAGGA
ACGACACATCaagttgaaaaaatatatgaagAGATTGAAAAAAGCGTTTT
ATTTACCAACGCTCTTCGTGCTCAATTTCCTACTCTTCACTTAC Run BLAST on NCBI transcript from alignment at scaffold_125:62952..64375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047309 ID=TCONS_00047309|Name=TCONS_00047309|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_125:62952..64375+ (Clytia hemisphaerica)
GGATTCTGGCTATTCTGCAGCAATGTTTTGATAATGGTTGATAGATTCAT
GGAAGTTTATCTCAATATCAGGTATGGAAAATAATCTTGTCACTTATTTG
GTAAAAATCTCATGAAGTTTTAATGAATTAGTTCATTCATGAGAtgctaa
atttttttgttttctgacATCATTACAAATTGCCTGAAAACAGATTttag
tcaaaagaaaaaaaaataaatttaagtaacagCGGTTTTATTTTCTACAT
TGAAATGCACTTCTTTTGGTGTATGACTCATCGTACTTTGAGTGGTGATA
ATGCGATAATGGGTTCgaaaaattactgaaaatttgGCATTAGtttccat
ttattttcttttgttatggTATAATACACTATATAAGCAATGCAATGCTT
CTCCACATAGCACCATCTCGCCCCATACCATTTATTTGGACCCCCCCACC
TGTATTGGTATGCAACTATAAAAGCAATGCTTTTCTGAATAGCACTATCT
TGTCAAATGTCATTTATTTGGATCTTCTTCCCGTCTTTGCTATTGGTATG
CAACTATAAAACAATGCTTCTCTGCATAACACTATCTTGTCCCGTATCAT
TTATTTCGAACTCACCCCCTTTGTTTAGATTCTTGAGCCAGATGTTTACC
GTTCAAAGTTAGTTTCTCccaaaatacacgctttttttttgtaagaatgg
tgtaactccatttcatcatgaatattcttaacttttttcggaaaatcatc
ctaaaatattcttacagcacattcttaggttgggatcctaattcatacta
gatttaacatttagtacatacgtctcaagcataaaatggcacttttgtaa
aaggagtgagcctaacttaggcataattgatcatttataattgaaaatgc
tcttaaaatgacattcttagctttagtagcaaaattccatgatggtgata
ttcttagcatattcttagttttttagccattttcatcatggacattctta
ttgtattgtttgtttctttttctaattttaatttattttgctttttttta
ggTACAGTGTTTACTGGTCAGAGAAGCGCTCAAAGATCGTTGTCTATATC
AGTACGCTAATGGCATTTTCTTTGGGATGCATTTTCGCTTATTTCAATAC
AGAACTTAGCGAAGTTATTTTCTACATATGGATTGTATTAGATCATTTAC
ATGTCGTAGTTGCGATGATTGCTTACGGGTATCTATTTACAAAGTTACGC
GACAATAGACGTAGAACAGCTCGCGTGAGTGCTGTCGTAACCACTAACAA
CAATAATCTTGACGTCCCAGGAGAGCAGGAACGACACATCaagttgaaaa
aatatatgaagAGATTGAAAAAAGCGTTTTATTTACCAACGCTCTTCGTG
CTCAATTTCCTACTCTTCACTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047309-exon-scaffold_125-1491911889:62952..63022 | TCONS_00047309-exon-scaffold_125-1491911889:62952..63022 | Clytia hemisphaerica | exon |
| TCONS_00047309-exon-scaffold_125-1510915933:62952..63022 | TCONS_00047309-exon-scaffold_125-1510915933:62952..63022 | Clytia hemisphaerica | exon |
| TCONS_00047309-exon-scaffold_125-1575043694:62952..63022 | TCONS_00047309-exon-scaffold_125-1575043694:62952..63022 | Clytia hemisphaerica | exon |
| TCONS_00047309-exon-scaffold_125-1491911889:64003..64375 | TCONS_00047309-exon-scaffold_125-1491911889:64003..64375 | Clytia hemisphaerica | exon |
| TCONS_00047309-exon-scaffold_125-1510915933:64003..64375 | TCONS_00047309-exon-scaffold_125-1510915933:64003..64375 | Clytia hemisphaerica | exon |
| TCONS_00047309-exon-scaffold_125-1575043694:64003..64375 | TCONS_00047309-exon-scaffold_125-1575043694:64003..64375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_125 | supercontig | scaffold_125:62952..64375 + |
Blast
The following BLAST results are available for this feature:
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