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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047297 ID=TCONS_00047297|Name=TCONS_00047297|organism=Clytia hemisphaerica|type=transcript|length=2096bpRun BLAST on NCBI protein sequence of TCONS_00047297-protein >TCONS_00047297-protein ID=TCONS_00047297-protein|Name=TCONS_00047297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp MASKRCVQNIIKLQRKLKLFNTIPRSTANFSCRNLNTTAAVVESSSEWKRRun BLAST on NCBI transcript from alignment at scaffold_124:225451..256165- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047297 ID=TCONS_00047297|Name=TCONS_00047297|organism=Clytia hemisphaerica|type=transcript|length=30715bp|location=Sequence derived from alignment at scaffold_124:225451..256165- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_124:225451..256165- >TCONS_00047297 ID=TCONS_00047297|Name=TCONS_00047297|organism=Clytia hemisphaerica|type=CDS|length=19620bp|location=Sequence derived from alignment at scaffold_124:225451..256165- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047297 vs. Swiss-Prot (Human)
Match: MICU3 (Calcium uptake protein 3, mitochondrial OS=Homo sapiens GN=MICU3 PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 6.564e-72 Identity = 143/399 (35.84%), Postives = 219/399 (54.89%), Query Frame = 3
Query: 657 AKEDLQKDEQVMSRREQRFNQFASFEYYGQIVMSPQDFIESITENKPKLARRGKIRLTERDFNRIEGSTPRISSGSNTFFRDRHHDGVITYSEYIFLVTVLTKSNTGLQTALKMMDINGDRVISFEEF---QQIV---------------------------------------QMINKSASKSTRSR---------VEDEQDTVELTT--TLMLHLFGKAGNDMVSFDRFFKFMDDLQSEVLELEFHEYSKSMRTISEIDFAKILLRNTMISESQYTEYLDRLKTRLEQIDHPKGITLEQFKAFHIFLSNLEDFVIAVQMTNAMNQTVDKELFTRAIKVTTGKDIDPHIVEVVFSLFDQDGDGKLSQNEFIGIMKDRLKRGFGKFPNTSGLAGFKHCL 1694
+ D++ + + RE+RF FAS E GQ+ M+P DFI ++T ++PK+A+ K L++++ N++ TP + GS+ FR+ GVI+Y+EY+FL+ +LTK + G + A M D +G+ ++ +EF Q+I +++++S + R E D L T TL++H FGK G ++F+ F++FMD+LQ+EVLE+EF YS M TISE DFA ILLR T + + + +L+ ++ I KGIT ++F++F FL+NLEDF IA+ M N ++++ ++ F RA+ V TG PH+V VF +FD D D +LS EFIGIMKDRL RGF + FK CL
Sbjct: 131 GRTDIEDLDLYATSRERRFRLFASIECEGQLFMTPYDFILAVTTDEPKVAKTWK-SLSKQELNQMLAETPPVWKGSSKLFRNLKEKGVISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEIFRKKNEKREIKGDEEKRAMLRLQLYGYHSPTNSVLKTDAEELVSRSYWDTLRRNTSQALFSDLAERADDITSLVTDTTLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVENT--SVFLENVRY---SIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRAVYVATGLKFSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQKYPTFKSCL 523 The following BLAST results are available for this feature:
BLAST of TCONS_00047297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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