TCONS_00047287 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047287
Unique Name	TCONS_00047287
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1371

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_124:118292..122893-

transcript sequence

>TCONS_00047287 ID=TCONS_00047287|Name=TCONS_00047287|organism=Clytia hemisphaerica|type=transcript|length=1371bp
tcTAGAATATATAATGTTTTCTATTGATCGTAAAAGAAAACTATCTTCAA
GCAAAAGAAATAATACAGAAAGTAGTGATGAAGAACTTGAGGACTTTTTG
TTTGGAAATACCAATTTCAAAACAGCATCAAAAGATGAAGTGATTTCTGA
TATTAATGTTCAAGGGGAGACAGAAACACTTTTACCTTTCTCCATAAGTA
CAAAACCAAGCCACTTTGATGGTGAGAAATTGGTTGAAGAAGATACTGAA
AAGAAACAAGAGCAACAACAGGATGAGGTTCAATTACTTGACCCTTTTGA
AAAGAAAGCTGCTTGGGAAGATCCTGATGATGACCAGATACAGGTTGATT
TGAatgagaaaaagaaattcaagagGATGAGAACCAACTATCAAGAAACA
AGTGTCAGTGGAAAAACATTTCAGAAGAGGCTCAAGGAAAGATACGAGCG
AGTTTTACCTGCACCAGCTTGGGCAGATATTTCTAATGTTGAAAAAAAGG
ATGATGAAGATAAACTCTTCAATACTGCATCagatcttttggaaaaatcG
TCAAGTTTACCAAGTGGGAAAATACAATTGACAAGAAAGTTAAATCTGAA
CAAGAAACAACCAGACGGTTTGAGCATCACTTCTCTTGGATTTCATCCAT
CAGCTAAGATTGCTTTTACTGCTTCATCTGGTAAGAGGCTGACTATATTT
CAGgCTGATggggaagaaaacaaaaaactacAAAGTGTATTTGTGCGAGA
TTTCGCGATTACCTCAGCAGCTTTTACTGATGGTGGCTCAAAAATCCTCA
TGACTGGTGACAAATCGCGATACATTATATTTGATCTTCTTGCAGGGAAC
ATTATTGATGTCCCAGGGTTAAGAGGCAAGAAAGGGTTGAATCTTGACAA
ATTTACTATTTCACCCGATGGGAGCGCAGTAGGATTTCTCGGAGATTATG
GATATTTACATTTCGCTTCAGTAGAGTCATGTCAGTATATGTACAGTTTG
AAAATGAATGGTACAATTTCAGCCGCAAcatattcaaaaaaatcaaacca
aatctaTACGACAGGAGGTGACGGAGAAGTGTATATATGGGATGCTCGCA
ATAGAAAGTGTTTACATAGATTTATAGATGATGGATCTATTGGCAGTACA
TCAATTGCATGTTCCAACAATGGGAAATTCTTAGCTGTGGGCTCGAAAAG
TGGCGTTGTCAACATCTACAACAATGAAGGTATTGAGAATTTCAAAACAC
CAAAACCTGTCAAAACGATGATGAACCTCAAAACTGAAATCGATGGAACT
GCTTTCAACTCAACTAGCGAAATCCTGGTCACATATACATCACATACGAA
GCATGCAATCAAAATGGTAAT

Run BLAST on NCBI

transcript from alignment at scaffold_124:118292..122893-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047287 ID=TCONS_00047287|Name=TCONS_00047287|organism=Clytia hemisphaerica|type=transcript|length=4602bp|location=Sequence derived from alignment at scaffold_124:118292..122893- (Clytia hemisphaerica)
TCTAGAATATATAATGTTTTCTATTGATCGTAAAAGAAAACTATCTTCAA
GCAAAAGAAATAATACAGAAAGTAGTGATGAAGAACTTGAGGACTTTTTG
TTTGGAAATACCAATTTCAAAACAGCATCAAAAGATGAAGTGATTTCTGA
TATTAATGTTCAAGGGGAGACAGAAACACTTTTACCTTTCTCCATAAGTA
CAAAACCAAGCCACTTTGATGGTGAGAAATTGGTTGAAGAAGATACTGAA
AAGAAACAAGAGCAACAACAGGTGATTTAAATAAAAAAAGAAGAGTTTTT
AAAAATTCTTGTTAACCTTTTTATGCAATGCTTCACAATAGGTTAATAAA
TACTAATCTTCAAAAAAAGTAGATTTTTATGAACCAAATTTCACTTTTTC
TCATTTATTACCTGACAAATGTCTAGAGGACATGAGACTCAGAGTACTAA
TATATGTAATTGTTGCTTTTTATGATTATAACTCCTTGCAGTTGAGAACT
ATGGTATTGAAACATTTACAAACTCAATATAGAGTTTGTTTATAATTTAT
ATGTAAATATTTTATCCATCACTCTTGTTTTTCAGGATGAGGTTCAATTA
CTTGACCCTTTTGAAAAGAAAGCTGCTTGGGAAGATCCTGATGATGACCA
GATACAGTAAGAATCATTCTTGTTCTTGTTTTTCATTTTTATTGTTTTTT
ATTTTATGTTTACATTTGATTTGACATGCAGAAAATAACAATTCCTTGTT
CAATTATTCTTGATTGTTGATTAAACATGAATATTTTGTTCCATTTATAG
GGTTGATTTGAATGAGAAAAAGAAATTCAAGAGGATGAGAACCAACTATC
AAGAAACAAGTGTCAGTGGAAAAACATTTCAGAAGAGGCTCAAGGAAAGG
TACTATGGTATATTAAATAAACAAACACTAGAATTTATGGCTGATGTCTT
TTAGACAAAATAAAATCTCAATCGCTTTCTCTTTCACCATAGATACGAGC
GAGTTTTACCTGCACCAGCTTGGGCAGATATTTCTAATGTTGAAAAAAAG
GATGATGAAGGTAAAATAAATAATTCTGTGGAATGTTTGAATTTCTTATT
TTATGTATACAATCTAATTTGTTTTTAGTTCTTAATTGTGCCTTCCCAAG
CGATTTTAAGTACCTAAAAATTTGACCGGTCTTTAGACTGTCTTTTGTTA
AGGGCCAGTAATTGACTGGTAAAAATCTGGGAGAAGGTCCCTGCAAGTAT
AGCTAAATTAGCAGCTATTTTGAGAGCATCTATTTCAACAAATAAATCTT
CTAGTTGTCTTGATGTAATGGTTACTAACAAACACCAGCAAACACTAACA
AACAGCCAGGACCAGTCTAACAAGTGGCAATTTGTGTATAAAAACAGCCA
GGGCGGTTCAAAATCAGATTTATAGAAGGTCTGAAGGCCAATTTAAAACA
ATTACTTTACTGCTGCTAGACCGTTCGTAATACCGCTCCAGGGCCAGTCC
ACTTTTCAGATAATTTAATCCCTTTGGGAATCACCATTGGGGATGTTTTA
TAAGCAATGTTATTTAATTCAATATTTCCAAAAAAGTAATTGTATTGTTC
TTTTTAGATAAACTCTTCAATACTGCATCAGATCTTTTGGAAAAATCGTC
AAGTTTACCAAGTGGGAAAATACAATTGACAAGAAAGTTAAATCTGAACA
AGAAACAACCAGACGGTTTGAGCATCACTTCTCTTGGATTTCATCCATCA
GCTAAGATTGCTTTTACTGCTTCATCTGGTAAGAGGCTGACTATATTTCA
GGTAACTTTTTCTAATTTTGTTGAATTCTTTTGCACGCAAATACCATGGA
AACAACCTGATTTTAAGTGACTTTTTATAGACATACACTTTAAAGTAAAG
AGAACATGGTAATTTGTAAAATTATTATCAATCAAGTGCATTAAAATAGT
CTGAATTAACCCAAGATTTGCCAAAGTAGAAGATGACAGACACAAAAATA
AGTTACTTTACTTTTTTTAGGCTGATGGGGAAGAAAACAAAAAACTACAA
AGTGTATTTGTGCGAGATTTCGCGATTACCTCAGCAGCTTTTACTGATGG
TGGCTCAAAAATCCTCATGACTGGTGACAAATCGCGATACATTATATTTG
ATCTTCTTGCAGGGAACATTATTGATGTCCCAGGGTTAAGAGGTAACACA
ATGGATTAGTACAGTCAACCTAATACTTACATGCTGAAAGTTTCTAGAAA
AATGTTAAAGTTTGTCTCAATTAGCTTTAATTGTTCTAAATAAGCACCAT
TAAAAATCAAGGACACAGTTTACTTGACTTAAATCATATCTATTGGATAT
TTTTCGATCCAAAAGAATTATTTTGAGGTTTGGAGTTGCGTTATTTAATG
TTTATTTCCCTCCTAATAGGCAAGAAAGGGTTGAATCTTGACAAATTTAC
TATTTCACCCGATGGGAGCGCAGTAGGATTTCTCGGAGATTATGGATATT
TACATTTCGCTTCAGTAGAGGTAAGATCTCTTATTAAGAAGTGATGATTC
TATTTGTGACTTTCACAATTTTTACTTGCTAAAATTTAAGAAATTGTTGC
CTTGTCAATATAAGCTCTCACCAAACCTAGAAAACTAACCCCTAATTGTT
TAAAATGCTCATTTTCAGAGAAGATATGTCCTAACAATTAAAAAATTGAT
TCTAGTCAAAATTAGAAAATCGCTTCACTCATCAAAATGATTTTTTTTCC
AAACTAGTTTTTCTTAGGACTATTGCTCTTCAACAAAATTAGCCCTTAAG
TACGAAATATGAAATTGTATAACATGGCATACAACAGTGGGACTTTGACT
TTTTTCTTTATTTAGGTCTACAAACTTTGGCGAGCAAAAACTTTCACAAG
GTCGAAAAATGTTTTGAGGAAAAAATATTGTTTTTTTTTTGCAAGCAAGA
AACTTTCGCTAACCGTTGGATAAACATGACAAAATTTAAAACATACTTGA
ATTATTCATTGATTATTTATTGCAAATTCAAAGTTTTGCTAGATTTTCAA
CTTTTTAAAGAATCTTGTGCGTGTATCAACTTTCGGGAATCACCTAATTA
AGACATTAACTTTCATGAAAAAGGCCTAAACACGATTTCATTTTAAACTT
TGGCATTTGCTTTGTTTTTAGTCATGTCAGTATATGTACAGTTTGAAAAT
GAATGGTACAATTTCAGCCGCAACATATTCAAAAAAATCAAACCAAATCT
ATACGACAGGAGGTAAATTACTTTTTTAATATTAAAATTTTCAATAGGAA
CTGTACTATATCAACTAAATATTCTATATTTCAACTCAAATTCATTAATT
GATTTTAGGTGACGGAGAAGTGTATATATGGGATGCTCGCAATAGAAAGT
GTTTACATAGATTTATAGATGATGGATCTATTGGCAGTACATCAATTGCA
TGTTCCAACAATGGGAAATTCTTAGCTGTGGGGTATGTACTCATTATAAT
TTAGTGACTGGTGATGACCTCATTAATTTCATTTATTTACAATAAATGTG
ACAAGATTAGTGAATAGTATCATAACATTTCCCTTAGCTCGAAAAGTGGC
GTTGTCAACATCTACAACAATGAAGGTATTGAGAATTTCAAAACACCAAA
ACCTGTCAAAACGATGATGAACCTCAAAACTGAAATCGATGGAACTGCTT
TCAACTCAACTAGGTACAATTAAATGAATTATGTACACAAAAACAAATAT
TAATTCATTTTAGATACTTTTAGATAGTTTGACAGTAAGTAAGAAAGTCT
GCAACCGCAGTCAGAGGCCACCCGAAGGCTCCTCTTTCGATAGCTATCTA
CCCATTGGTATGGGAGGCTGTCACTCTTTTTCCCTGGATTGCTCCACATA
CATACCCTTGATCTTTCTCTTAATTGCTGAGCATCAAGCAGAGAGGCGTC
AAGTACCATTTTGGGAATCTTTGGTATGACCCGGCTGGGGGTTGAACCCA
CAACCTTGTGAATCGTAGCCTGTTACTCTACCACTGCACTACAGTCGTTT
CACGGTCGTTTGACAGTAAACTTCCTCATTGTCAGTAGGGAAGTTTTGGT
CAAATGATTAAAGGGACATAAAAGTACTGACGAAATTTATAAGCAAANAA
TTGTTTAAAATGCTCATTTTCAGGGAAGATATGTCCTAACAATTAAAAAA
TTGATTCTAGTCAAAATTAGAAAATCGCTTCACTCATCAAAATGATTTTT
TTTCCAAACTAGTTTTNCGGGATACGAAATCAAAGCAAATGTCACATGTC
AAAATGAAAATAAAAAATATGGATAATTTTGATTGTTTCAATTGTTTTAC
AAGTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACGTAG
TTCGCGCAATGTTTACATTTTACTACTTTTATGTCCTTTTAACAAGTAAA
GCCCTGTCAAGTTTCACACAACCCAGTCACAGCAATTATAATTATTAACA
ATGCCGTTAATTTATAATTAAAAAAACATTTCTTACTCTTTGTTTTAGCG
AAATCCTGGTCACATATACATCACATACGAAGCATGCAATCAAAATGGTA
AT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030123	XLOC_030123	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_124	supercontig	scaffold_124:118292..122893 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225177	7.62989	5.39946	6.03974	0.315157	14.1245	17.4143	0.00469469	33.326	28.3111	11.3162	17.9311	16.542	16.48	23.8866	23.9789	32.8363	29.003	2.34422	10.2965	0.340537	6.46044	2.51142	11.0869	10.129	6.77203	2.92583	1.27984	0.073186	16.4863

Blast

[Close]

BLAST of TCONS_00047287 vs. Swiss-Prot (Human)
Match: UTP18 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens GN=UTP18 PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 4.352e-76
Identity = 135/368 (36.68%), Postives = 219/368 (59.51%), Query Frame = 2

Query:  293 PFEKKAAWEDPDDDQIQVDLNEKKKFKR-MRTNYQETSVSGKTFQKRLKERYERVLPA-PAWADISN------VEKKDDEDKLFNTASDLLEKSSSLPSGKIQLTRKLNLNKKQPDGLSITSLGFHPSAKIAFTASSGKRLTIFQADGEENKKLQSVFVRDFAITSAAFTDGGSKILMTGDKSRYI-IFDLLAGNIIDVPGLRGKKGLNLDKFTISPDGSAVGFLGDYGYLHFASVESCQYMYSLKMNGTISAATYSKKSNQIYTTGGDGEVYIWDARNRKCLHRFIDDGSIGSTSIACSNNGKFLAVGSKSGVVNIYNNEGIENFKTPKPVKTMMNLKTEIDGTAFNSTSEILVTYTSHTKHAIKMV 1369
            P +KK  W D +D+  ++      +F++ M  N  E+ +S    +KRLKE ++  +   PAWA+ +        E ++DED L     + +  S+SLP G +++    + N ++P    I+S+ FHP A+I   A     +++FQ DG+ N K+QS+++  F I  A F+  G ++L T   S+ + ++D+LAG +I V  +RG K   +  F +SPDGS +   G  GYLH  ++++ + + S+K+NG ++A+T+S  S ++Y + GDGEVY+WD  +RKCL+RF+D+GS+   SIA S NG+++A GS  GVVNIYN +       PKP+K +MNL T +    FN T+EIL   +   K A+++V
Sbjct:  135 PPQKKPVWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKRKTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLV 502

The following BLAST results are available for this feature:

BLAST of TCONS_00047287 vs. Swiss-Prot (Human)

BLAST of TCONS_00047287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UTP18	4.352e-76	36.68	U3 small nucleolar RNA-associated protein 18 homol...	[more]

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TCONS_00047287 (transcript) - C. hemisphaerica