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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=transcript|length=695bp ACTTATTATTTTCGTCTTGTTTTAGAGAACTTAGTGAAAACCTTGATCCG TGGGCGAGGCTATGAAAATCTTGGCTGCCGGAATGATACACCAAAATGTG CAGAGAAAGCACATTACAACCAATACAATAAAGTGCGTGTGAACACACCT CCATGTTGCCGTGCCAAAATCATCGAAATGTTCAAACATACTACGAAAGC CCTTTCGAGAGATAATATTACTCATTTCTTACAGTTCGGTGCATTGATCG GTTACTATAGGAACCAACACGTGGTGCCCTATGATTCAGATATCGACCTC TACATGGATAAAGATTATTGGATACAGTCTCATCTGTCACCCATTATTGA AAACCTTCGAAAGACTTACGGCTACCGATTCGAATTTCATGATGGCggta tgaaaatgaaagtgtttTATAGCCATAGCAACAACAATAGTATAGACATA TGGCCTTTCAAAGTTGTGTTTGATAAGCAACAAAGACCATTTGTGAAAAT ACCTCATGGAGCCGCTGTGAGGCAACCAATGGCCAACATTTTCCCCTTGA GGGCGGTCCAGTTTGAAGGTATTTGGACCTTTGTGCCCAGGAAGCCGAAA GAGGTTTTAGATCTTCAGTATGGGGAAGGTTATTGGGAGAAGGAGTTAGA TTGCAAATACTTTAACATTGATGGTCATTGTATACCACAGTCCTT Run BLAST on NCBI protein sequence of Fukutin related protein >TCONS_00047300-protein ID=TCONS_00047300-protein|Name=Fukutin related protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
TYYFRLVLENLVKTLIRGRGYENLGCRNDTPKCAEKAHYNQYNKVRVNTP PCCRAKIIEMFKHTTKALSRDNITHFLQFGALIGYYRNQHVVPYDSDIDL YMDKDYWIQSHLSPIIENLRKTYGYRFEFHDGGMKMKVFYSHSNNNSIDI WPFKVVFDKQQRPFVKIPHGAAVRQPMANIFPLRAVQFEGIWTFVPRKPK EVLDLQYGEGYWEKELDCKYFNIDGHCIPQS Run BLAST on NCBI transcript from alignment at scaffold_124:35807..36501 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=transcript|length=695bp|location=Sequence derived from alignment at scaffold_124:35807..36501 (Clytia hemisphaerica) AAGGACTGTGGTATACAATGACCATCAATGTTAAAGTATTTGCAATCTAA
CTCCTTCTCCCAATAACCTTCCCCATACTGAAGATCTAAAACCTCTTTCG
GCTTCCTGGGCACAAAGGTCCAAATACCTTCAAACTGGACCGCCCTCAAG
GGGAAAATGTTGGCCATTGGTTGCCTCACAGCGGCTCCATGAGGTATTTT
CACAAATGGTCTTTGTTGCTTATCAAACACAACTTTGAAAGGCCATATGT
CTATACTATTGTTGTTGCTATGGCTATAaaacactttcattttcataccG
CCATCATGAAATTCGAATCGGTAGCCGTAAGTCTTTCGAAGGTTTTCAAT
AATGGGTGACAGATGAGACTGTATCCAATAATCTTTATCCATGTAGAGGT
CGATATCTGAATCATAGGGCACCACGTGTTGGTTCCTATAGTAACCGATC
AATGCACCGAACTGTAAGAAATGAGTAATATTATCTCTCGAAAGGGCTTT
CGTAGTATGTTTGAACATTTCGATGATTTTGGCACGGCAACATGGAGGTG
TGTTCACACGCACTTTATTGTATTGGTTGTAATGTGCTTTCTCTGCACAT
TTTGGTGTATCATTCCGGCAGCCAAGATTTTCATAGCCTCGCCCACGGAT
CAAGGTTTTCACTAAGTTCTCTAAAACAAGACGAAAATAATAAGT Coding sequence (CDS) from alignment at scaffold_124:35807..36501 >TCONS_00047300 ID=TCONS_00047300|Name=TCONS_00047300|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_124:35807..36501 (Clytia hemisphaerica) GGACTGTGGTATACAATGACCATCAATGTTAAAGTATTTGCAATCTAACT CCTTCTCCCAATAACCTTCCCCATACTGAAGATCTAAAACCTCTTTCGGC TTCCTGGGCACAAAGGTCCAAATACCTTCAAACTGGACCGCCCTCAAGGG GAAAATGTTGGCCATTGGTTGCCTCACAGCGGCTCCATGAGGTATTTTCA CAAATGGTCTTTGTTGCTTATCAAACACAACTTTGAAAGGCCATATGTCT ATACTATTGTTGTTGCTATGGCTATAaaacactttcattttcataccGCC ATCATGAAATTCGAATCGGTAGCCGTAAGTCTTTCGAAGGTTTTCAATAA TGGGTGACAGATGAGACTGTATCCAATAATCTTTATCCATGTAGAGGTCG ATATCTGAATCATAGGGCACCACGTGTTGGTTCCTATAGTAACCGATCAA TGCACCGAACTGTAAGAAATGAGTAATATTATCTCTCGAAAGGGCTTTCG TAGTATGTTTGAACATTTCGATGATTTTGGCACGGCAACATGGAGGTGTG TTCACACGCACTTTATTGTATTGGTTGTAATGTGCTTTCTCTGCACATTT TGGTGTATCATTCCGGCAGCCAAGATTTTCATAGCCTCGCCCACGGATCA AGGTTTTCACTAAGTTCTCTAAAACAAGACGAAAATAATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047300-exon-scaffold_124-1491911889:35807..36501 | TCONS_00047300-exon-scaffold_124-1491911889:35807..36501 | Clytia hemisphaerica | exon |
TCONS_00047300-exon-scaffold_124-1510915933:35807..36501 | TCONS_00047300-exon-scaffold_124-1510915933:35807..36501 | Clytia hemisphaerica | exon |
TCONS_00047300-exon-scaffold_124-1575043694:35807..36501 | TCONS_00047300-exon-scaffold_124-1575043694:35807..36501 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_124 | supercontig | scaffold_124:35807..36501 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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