TCONS_00047221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047221
Unique NameTCONS_00047221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047221 ID=TCONS_00047221|Name=TCONS_00047221|organism=Clytia hemisphaerica|type=transcript|length=406bp
GTCCAAATGCAGCGGACTTGGATTAAGTTACATCTACTACGACGAAATGG
CACAAACTTATTGCGCAAGTCGATTATCGCGACCTGGCTTTGTGTTTGCT
ATCCGAAGAGATTGCCAAGGAACAGCACCCACCTGCAACGCCTTGTGTCA
GAAAGTGAAAGCAGCTGCACTCAAAATTATCAATAACCAACGAAAAAACT
TTGGATGTTTTGATGCTATCTATATCCGTAAAGAACACACCCAACTCGCC
ATTGACACAAGTGGACGTCAACCAGACGCAGGGAAGATAAGTCAACTGAC
ATATGGCTATGGTAAAGGCGGATGTAGCTGGACACCAAACCATTGTGGAC
CCAACTTCTGCTGTTGCGCAGCAACATAATGTAATGATCATTGTTAAAGT
ATTgtt
Run BLAST on NCBI

transcript from alignment at scaffold_123:30463..31333-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047221 ID=TCONS_00047221|Name=TCONS_00047221|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at scaffold_123:30463..31333- (Clytia hemisphaerica)
GTCCAAATGCAGCGGACTTGGATTAAGTTACATCTACTACGACGAAATGG
CACAAACTTATTGCGCAAGTCGATTATCGCGACCTGGCTTTGTGTTTGCT
ATCCGAAGAGATTGCCAAGGAACAGCACCCACCTGCAACGCCTTGTGTCA
GAAAGTGAAAGCAGCTGCACTCAAAATTATCAATAACCAACGAAAAAAGT
ATGATTACCTATTTAATTCTTTTCAATTACCTCCTTAGTCAAACCACAAA
GCTACTGCTTTTAACCAGAAAATCGACCAAAATAATAGTCTATTCATTTT
GGAGCAATAAACTCTGAACAAGGTCTGACCACGCTATCTTTTATAAAACA
CTAGGGTTCTACACATAATCAATAGAACAGATAATAACAAAGACATTCAA
TTGACATTGATAGACCTTTATATCCTCTTCACAGCAATAGAAGAAAAAAA
CTGCAGTTAACTAACAAACATTTTGTGAGATTAAAATAAATGATAAGTAT
GGCGGGAAGCGCAGTGATAAGACAAATTGCTGGAATTTAAATGGTCTAAA
GTCTACTTTTTGTAAAGATGGCACATTATTTGCTTCGCCTGCTGTGGCTT
GAAAAAAGAAAGAGGAAGTTCTACGGGTAGCCTGTGTAGTAAAAAATTGT
GTCTTTATTGCAGCTTTGGATGTTTTGATGCTATCTATATCCGTAAAGAA
CACACCCAACTCGCCATTGACACAAGTGGACGTCAACCAGACGCAGGGAA
GATAAGTCAACTGACATATGGCTATGGTAAAGGCGGATGTAGCTGGACAC
CAAACCATTGTGGACCCAACTTCTGCTGTTGCGCAGCAACATAATGTAAT
GATCATTGTTAAAGTATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030080XLOC_030080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047221-exon-scaffold_123-1575043694:31136..31333TCONS_00047221-exon-scaffold_123-1575043694:31136..31333Clytia hemisphaericaexon
TCONS_00047221-exon-scaffold_123-1575043694:30463..30670TCONS_00047221-exon-scaffold_123-1575043694:30463..30670Clytia hemisphaericaexon
TCONS_00047221-exon-scaffold_123-1510915933:31136..31333TCONS_00047221-exon-scaffold_123-1510915933:31136..31333Clytia hemisphaericaexon
TCONS_00047221-exon-scaffold_123-1510915933:30463..30670TCONS_00047221-exon-scaffold_123-1510915933:30463..30670Clytia hemisphaericaexon
TCONS_00047221-exon-scaffold_123-1491911889:31136..31333TCONS_00047221-exon-scaffold_123-1491911889:31136..31333Clytia hemisphaericaexon
TCONS_00047221-exon-scaffold_123-1491911889:30463..30670TCONS_00047221-exon-scaffold_123-1491911889:30463..30670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:30463..31333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.16132	0	0.83221	1.03923	2.87689	2.93706	20.9848	17.8887	82.98	12.9865	7.829	15.8875	10.3504	22.1397	2.81971	2.98065	10.4471	13.3627	0.648214	0.254791	16.2467	11.2809	0	0	0	0.946475	45.1152	43.714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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