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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047097 ID=TCONS_00047097|Name=TCONS_00047097|organism=Clytia hemisphaerica|type=transcript|length=3476bp
aaaaatgtacaatAATGTGAAAAAcataataagaaattatgtcACTCCTG
ACATGATTGGAAAACCATATCTCCTGGCAGAAACTTCTTTACGTACAACT
GATTGgggaaaagattttcaaattcttgACAATTATTATCATGATGACAG
CTCACAAATTGATGTAAATGAAATTGCTAAGGATATCTATTTGGTTGAAA
ATGTATTGACTCAATTCCAATGTGCAACAATCATtgataaagcaaaaaaa
ttgaatctaCAATATTGTTGTTATGGCGAAGAAAGAAATAActctcgttt
agttttgtttgatGAGAAATTTGCTGATTTTCTTTGGGATAatatttctg
agaaatttgaaacacAAATACAAGATTCTAAAATTCATCCATTTGGTTTC
GATGCTGCTAGAGGCAATTGGGAGATATTTGGTGTCAATGAAGCAATGCG
TCTGAACAGATACAGTGGAAAAAGAAAGGAGTTTTTTGCTCCCCACAGAG
ATGCTCCATTTTGTCCCAATGGTGACAAAAGATCCTTGTATACTATGCTC
ATTTATTTGAATGATGATTTTGAAGGAGGTCAGACAAAATTTTACACACC
AAAAGACCCCTCTATTGACACCAAAGGTTTAACAATCAAAGAGGAAATAG
AAAAGCATGGAAGTTTGGAAGGCAGTTTCGACAGCTTCACTGTGTCTCCA
AAAGCAGGAAGTGTTGttatcttcaaacagaatcttaTTCACGAGGGATG
CAAACTTTCAGGAGATGatAGAAGAAACCAAAATGTACAACAATGTGAAA
AACATAATAAGAAATAACATCACGCCTGACATGATTGGAAAACCATATCT
CCTGGCAGAAACTTCTTTACGTACAACTGATTGGGGAAAAGATTTTCGAT
TTCTTGATGACAAGATGGCAGATGTTAAACCAGACatagaaattgacaaa
aattgcaAATGATATTTATTTGGTGAAGAATTTGTTGACTGAACCTCAAT
GCAAAGAAATTATTGGTAAAGCTGAAAATCTAAACTTGCAGTTATGTTGC
TATGATGAAACAAGAAAGAATTCTCGATTAGTTTTATTTGATGAAGAATT
TGCAGATTTTCTTTGGGATAATATTTCCAACCAATTTGAAAAGCAAATCG
GAGATGCTCGTATTCATCCATTTGGCTTTGATGCAGCTAGGGGCCATTGG
AAGTTATCTTGTGTCAATCAAGCAATGCGCCTGAGTGAATAGatatggcg
gaaaaaagaaagaattttttgctCCTCATAGAGATGCTTCATTTTGTCCC
AATGGTCACAAAAGATCGTTGTATACTATGCTCATCTATTTGAATGATGG
TTTTCGTGGCGGTCAGACAAAATTTTATGTTCCAAAAGACACAACAATTG
TCACTAAAGGCTGCACTATAAAGGAGGAGGTAAAAGAGAAGTTTATGTTC
AGGATATGACTGCCATATTATTGCACCAAAGACAGGGCAAGCAgttattt
tcaaacaaaatctgATTCATGAAGGATGCAAGCTTTCACCAAAGAGTTAC
AAGTTTGTAATCAAAACTGATATTATGACTGAGCGGGTTGGAAAAAAGCT
TGGATTCTGCCCTCCTaaggaaaaatttgatgataaTAAGAAGTGTTTGC
AATTATTTCGCCAAGCACAACAATTTGAATTGGGACGTAATTATGATAAA
GCTAACGAGTGTTATGAACGAAGTCTCTCTTTGAGGTATTGCTACCCTCA
GAATCTTGATGGTGGTATTTATCAAAAAGGAGAACAATTATTGACTGACA
ATGTTGCAGAATCGCAAGAATCTTTACCTTGCTCTCAAATATCAACTCTC
TCCACCTCATCAAATACAAATCCTTTCTACATTTTTTCTCAAGAGGTGTG
GCATAAAATTATGGTCTACCTGCAACATGACAAAGCTTTACAAAGCCTTT
gtgaagttttttcttttttaagctcAGAGCGAAGGAAGATTTTGTCCAAT
CAATTTGTGCCAAAGGTTGACCATCATAGtggaattttcaccaaattccC
ATTTCAAAATGGAAAGTTTGTTTCTGAAAATCTAGAAAGGTGTATTAAAG
TTTCAGCAGTTTATTCAATGTGTTTACTTGGTAATGAGCAAAGAAATTCG
CATTATTTGGTGAATTATGATAGAGAAACTAGAAATGCTACTACAGCCCA
ATTGAAAGATCTTCTTTATGGGGTGTTTGCTGAGGAACCTGTCCAAggaa
cattcttcaaagtagctCAAAGAAAAGCTAACAAGAATCCGAATGAAGAT
TTGTACCATAGTGTTGATAGGAAATTCATGTCAACACATTTTGATCGAGA
TGATATTGGTATTGatttaaaatctgaaattaGATCACATCTCACGATAT
ATGATAAGGACAGTGATGATGAAGAGTACAGCGATTCTGAGGAAAGTGAC
CGAGAAGGAAAAACTGATGAATTCACGAAGAAAGATTTCTACAATAATGC
CAAAGATAAACCATATCCTATAAAAGATTTTCACAATCGTATAACCTTAG
ATGGTTTTGACCACTATTACCGATATTGTAGAAATAAGTTTCCACCTAAG
TCAGCTGACGAGGCTGATTATTATAAATCATCTGCTTGTTTATATGATTG
TATTACGTACCCAGAAGATCAACGAAACGAACTACTGGAAAAATTAGTCC
CTGAAGACCATTACAACTATCATGTAACCAGGATGAATGTTCCTACCTCA
TTAGAACCAAGTTGTGCAATCTTCCGAAAACTAAATAAACCAATTGATGA
TATGAGAGGAGAGAGCTGTGTTTGTGTTTTTGCAGATGTTGGTAGTAGAT
TGACTGAAAACTGCTCCACTCATCTTTTTAATAGTATTGTTGCTAATTTC
AGCAAAACGAAACTGGCGGTAGAATTAGCTGCTGATTATTTGAACTCAGT
TTACCAATTTTCCCAATGGATTGAACATTTTTGTGATGATGGAGATTTTG
AGTTGATAACATACCGTGTAAATATCAGGCAAATGGAAGAAGTGTTCTCT
TCTTTCAATCATGCGTCGTGCCAGTGTATGTTCCCAAATTACAAAGTTAA
TGATTATGTCAATTTGTCCAACTATCCAATGTTAGATACCATTGCTGTTG
TCGTGGCAACGAATAAAAAGGATTCAAACGAAGTTTATATCTATACGGAG
TATGATGGTATCACTGCTCTATGatgaattattttgttttatgaTCCTAT
TTGCACATACAAGcttcagtttttttgttttcgtaGCTCACTCAAATATA
TATCACAGTAAATAGTTTTATCTCAAAACATTGTAGATAGCAAGTTtcga
ataaaactttttttaacaaactGCCAAAAGGTTGATATCTATCTTCACCA
ATCAGTGGAAATAATATCCCTTAAACTATCCAaatataattatattttat
tttaaagattattagagcctaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_121:506..6762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047097 ID=TCONS_00047097|Name=TCONS_00047097|organism=Clytia hemisphaerica|type=transcript|length=6257bp|location=Sequence derived from alignment at scaffold_121:506..6762+ (Clytia hemisphaerica)
aaaaatgtacaatAATGTGAAAAAcataataagaaattatgtcACTCCTG
ACATGATTGGAAAACCATATCTCCTGGCAGAAACTTCTTTACGTACAACT
GATTGgggaaaagattttcaaattcttgACAATTATTATCATGATGACAG
CTCACAAATTGATGTAAATGAAATTGCTAAGGATATCTATTTGGTTGAAA
ATGTATTGACTCAATTCCAATGTGCAACAATCATtgataaagcaaaaaaa
ttgaatctaCAATATTGTTGTTATGGCGAAGAAAGAAATAActctcgttt
agttttgtttgatGAGAAATTTGCTGATTTTCTTTGGGATAatatttctg
agaaatttgaaacacAAATACAAGATTCTAAAATTCATCCATTTGGTTTC
GATGCTGCTAGAGGCAATTGGGAGATATTTGGTGTCAATGAAGCAATGCG
TCTGAACAGATACAGTGGAAAAAGAAAGGAGTTTTTTGCTCCCCACAGAG
ATGCTCCATTTTGTCCCAATGGTGACAAAAGATCCTTGTATACTATGCTC
ATTTATTTGAATGATGATTTTGAAGGAGGTCAGACAAAATTTTACACACC
AAAAGACCCCTCTATTGACACCAAAGGTTTAACAATCAAAGAGGAAATAG
AAAAGCATGGAAGTTTGGAAGGCAGTTTCGACAGCTTCACTGTGTCTCCA
AAAGCAGGAAGTGTTGttatcttcaaacagaatcttaTTCACGAGGGATG
CAAACTTTCAGGAGATGGTAAATATAAGTTTGTAATTAAAACTGATATTT
TGGTTGAGCGTGTCAGCAAAAAACTTGGATTCTGCCCTCCCAAGGAAGAA
TTTGATGACTATCAGAACTGTTTACAGTTATTTCGTCAAGCCCAACAACA
TGAGATGAGGGGGCAGAACCAAGAAGCAAATGAATGCTATGAGAAAAGCT
TATCATTTCGTTATTATTATCCATCATCTTTATTGATTAGTAATTCCGAT
GAACTAAACAAAGCTAGCACTGATGATCCCAATACATTTGATTCCCAGAT
AAGTATGACGTCAACTTCCTCCATTCCTTCTCGGTCCAACCCATTTACCA
TCTTTCCTCAAAATATTTGGAACAGAATAATGGTTTTGGTACAAAATGAT
AAATCAATTCACAGTTTGTGTGAACTTTTCCCCTTGTTGAATATTGAGAA
GAGAAGGATTCTTTTTCAAAGAGTCGCACCAATGGTTGATCATCACAGTG
GTATTTACACTAAGTTCTCGTATGATAATGGGCATTTCGTAAATGGCTGC
CTTGAAAACTGTATTAAAGTTTGTGCTGTTTATTCCATGTGCCTGCTTGG
TAATACACCAAAAGATTCACACTATTTGGTGAATTATGACAGAGAAACAA
GGAATGCAACAACTGTTCAGTTAAGAGATCTTCTTTATGGTGTGTTTGCC
AATGAACCTGTCCAAGGAACTATTTTCTCTGTTGCTCGgagagaaaaaga
caaaaaaccCAATACTGATTTGTACCATAGTGTTGATAGGAAATTCATGT
CAACACATTTTGATCGAGATGATATTGGTATTGATATAGAATCTGAGATC
AGATcaagtttgaagttttttgaTCTTGATAGTGATGAAGAAGATAAAGA
TGAAGAAttaattgaaaatgaagaattaattgaaaatgaagacgaGGAAA
AGCAAGTAAACATAACGAATGTAAAGGATGTTGATGTTAAGGTTGAAGAA
ATCGGTGTTTCCCAAGAAAACAATGAGTTTGACTCTGAATCTGATTCAAT
GAGTGATAATAGTAGCTCCACTGATTCTGAAAGTGATGATGAACCTGAGC
TCACAGAAAGAGATATTTGGAACTTTTGTCGTGACAAACAATACTACTTG
AAAGATTATTACAGTAGGTATTACCTTGGAACATTTGATACTCATTATGA
ATATTGCAAAAATGAATTACCGTACCAAGAAAAAGGAGATCCATATGATC
TGAATGCTTGTAATTTTGATATTGTTAATGAACCTGAAGATCAATGGCAC
GAGTTCTTTAGTGGTTATGCGTCAATGGAGTCTCCTGATTATTACCCTAT
TTACGTACCATCTTCCTATTCCGGCCCTGGTGCAGCAATTATTCGCAAAA
CCAATGCACCAGTCATAATGGATGATAGAGAAATCTGTATTTGTAATTTC
AAAGCAGTGGGTGGTTCATTAAGTAAAAATTGTTCTACACACACCTTCAA
TCATGTTATTGCTGATTTCAGTAAGATAAAGCTTGTAATCGAAAACGAAA
TTGCCTATGCTTATGGTACTCCTGACCAAAAAAGCATGGCATCTCTTTTG
AAATGGGTGAAACATTTTGCTGAGGATTTGTTCGACTTTGAAATGTATAA
AGTCAATATCAATGAAATGGAAGACGTATTATCATCATTCAATCATGCAG
CATGCCAATGTTTATTTCCAAGATATCGCATCGATGATTATGTCAATTTA
TCAAGCTATCCTATGTTGGATACTATTGTTGTAATTGTGGCAAAGAACAA
AATCGATCCAGGTGAAGTTCATATTTACACTGGCTATGCTGGTATTGCAG
CTCTTTGAGCACATTAATATACTATTATTAAGCTATTGTTAAATTTGAAT
GATAGGCGCgtctttttttggaattgactcCATTAAGGGGTAGAAGTGTT
TTTCTCTCGAAAAACTATGTAGAAGACTTTTAAGCAAGTATGGCCAATTT
CTGTACTGAACGAGAGTTATTTGATGTAGAAGTGTCATTTTATAAGCGAT
TTATGACCAAAACGAGGGGGAAACCACCACTTCTTCATCAAATAACTCCC
GTTCAGTACAGAAATCGATCATACTtgcttaaaagtcttctatatagttt
ttctaTATAGCTTTTCTAGAGAGCTTTCAGATTCTATAATTtgttttggc
ctaaaatgagtttgaaatttccatatAAATTGGGCCCTTTGGCTTTAGCC
TAGGTTTTCATAAATgagcccaaaaataagggcGACCCTTAGAATTTTTC
TGGGCCGCCCTTCTGATATCAATCCATAGGGTATTAGGTCCAAATTTGTt
gctttgttccaaatttgcacggtaattacaccaatcaggccTACTATTTC
CTTAGTTTGTGAAGCACCATACAGTACCATAGTAGGAAGTGtgctgaaat
tttgaaaataattttaaaccacTTGAAAAGCTTCACAaacaaaaatcatg
aaaaagtagATGATGTCAGTCCTTGATAACAATTATTATTTAGCTTCTAA
ACAATTGTGGTTTTGATAAGTATTAATgttacaatatttttttttcacgt
aATGTTCTATATAGAGATTATTTTTATAGTCATAAAGTTATAGAAAATGT
TTTCGTGTGCTTTATTTCCTTTCCCTGAATACGAGCCTTGTGAAAAAGGA
TGCATGGTCTCGAGGTActattttaacttttattttttctacaAGAGAGA
ATTTGAATGTCTTTGGGTCTTTTTTAATAatgtatatttatattttagat
AGAAGAAACCAAAATGTACAACAATGTGAAAAACATAATAAGAAATAACA
TCACGCCTGACATGATTGGAAAACCATATCTCCTGGCAGAAACTTCTTTA
CGTACAACTGATTGGGGAAAAGATTTTCGATTTCTTGATGACAAGATGGC
AGATGTTAAACCAGACatagaaattgacaaaaattgcaAATGATATTTAT
TTGGTGAAGAATTTGTTGACTGAACCTCAATGCAAAGAAATTATTGGTAA
AGCTGAAAATCTAAACTTGCAGTTATGTTGCTATGATGAAACAAGAAAGA
ATTCTCGATTAGTTTTATTTGATGAAGAATTTGCAGATTTTCTTTGGGAT
AATATTTCCAACCAATTTGAAAAGCAAATCGGAGATGCTCGTATTCATCC
ATTTGGCTTTGATGCAGCTAGGGGCCATTGGAAGTTATCTTGTGTCAATC
AAGCAATGCGCCTGAGTGAATAGatatggcggaaaaaagaaagaattttt
tgctCCTCATAGAGATGCTTCATTTTGTCCCAATGGTCACAAAAGATCGT
TGTATACTATGCTCATCTATTTGAATGATGGTTTTCGTGGCGGTCAGACA
AAATTTTATGTTCCAAAAGACACAACAATTGTCACTAAAGGCTGCACTAT
AAAGGAGGAGGTAAAAGAGAAGTTTATGTTCAGGATATGACTGCCATATT
ATTGCACCAAAGACAGGGCAAGCAgttattttcaaacaaaatctgATTCA
TGAAGGATGCAAGCTTTCACCAAAGAGTTACAAGTTTGTAATCAAAACTG
ATATTATGACTGAGCGGGTTGGAAAAAAGCTTGGATTCTGCCCTCCTaag
gaaaaatttgatgataaTAAGAAGTGTTTGCAATTATTTCGCCAAGCACA
ACAATTTGAATTGGGACGTAATTATGATAAAGCTAACGAGTGTTATGAAC
GAAGTCTCTCTTTGAGGTATTGCTACCCTCAGAATCTTGATGGTGGTATT
TATCAAAAAGGAGAACAATTATTGACTGACAATGTTGCAGAATCGCAAGA
ATCTTTACCTTGCTCTCAAATATCAACTCTCTCCACCTCATCAAATACAA
ATCCTTTCTACATTTTTTCTCAAGAGGTGTGGCATAAAATTATGGTCTAC
CTGCAACATGACAAAGCTTTACAAAGCCTTTgtgaagttttttctttttt
aagctcAGAGCGAAGGAAGATTTTGTCCAATCAATTTGTGCCAAAGGTTG
ACCATCATAGtggaattttcaccaaattccCATTTCAAAATGGAAAGTTT
GTTTCTGAAAATCTAGAAAGGTGTATTAAAGTTTCAGCAGTTTATTCAAT
GTGTTTACTTGGTAATGAGCAAAGAAATTCGCATTATTTGGTGAATTATG
ATAGAGAAACTAGAAATGCTACTACAGCCCAATTGAAAGATCTTCTTTAT
GGGGTGTTTGCTGAGGAACCTGTCCAAggaacattcttcaaagtagctCA
AAGAAAAGCTAACAAGAATCCGAATGAAGATTTGTACCATAGTGTTGATA
GGAAATTCATGTCAACACATTTTGATCGAGATGATATTGGTATTGattta
aaatctgaaattaGATCACATCTCACGATATATGATAAGGACAGTGATGA
TGAAGAGTACAGCGATTCTGAGGAAAGTGACCGAGAAGGAAAAACTGATG
AATTCACGAAGAAAGATTTCTACAATAATGCCAAAGATAAACCATATCCT
ATAAAAGATTTTCACAATCGTATAACCTTAGATGGTTTTGACCACTATTA
CCGATATTGTAGAAATAAGTTTCCACCTAAGTCAGCTGACGAGGCTGATT
ATTATAAATCATCTGCTTGTTTATATGATTGTATTACGTACCCAGAAGAT
CAACGAAACGAACTACTGGAAAAATTAGTCCCTGAAGACCATTACAACTA
TCATGTAACCAGGATGAATGTTCCTACCTCATTAGAACCAAGTTGTGCAA
TCTTCCGAAAACTAAATAAACCAATTGATGATATGAGAGGAGAGAGCTGT
GTTTGTGTTTTTGCAGATGTTGGTAGTAGATTGACTGAAAACTGCTCCAC
TCATCTTTTTAATAGTATTGTTGCTAATTTCAGCAAAACGAAACTGGCGG
TAGAATTAGCTGCTGATTATTTGAACTCAGTTTACCAATTTTCCCAATGG
ATTGAACATTTTTGTGATGATGGAGATTTTGAGTTGATAACATACCGTGT
AAATATCAGGCAAATGGAAGAAGTGTTCTCTTCTTTCAATCATGCGTCGT
GCCAGTGTATGTTCCCAAATTACAAAGTTAATGATTATGTCAATTTGTCC
AACTATCCAATGTTAGATACCATTGCTGTTGTCGTGGCAACGAATAAAAA
GGATTCAAACGAAGTTTATATCTATACGGAGTATGATGGTATCACTGCTC
TATGatgaattattttgttttatgaTCCTATTTGCACATACAAGcttcag
tttttttgttttcgtaGCTCACTCAAATATATATCACAGTAAATAGTTTT
ATCTCAAAACATTGTAGATAGCAAGTTtcgaataaaactttttttaacaa
actGCCAAAAGGTTGATATCTATCTTCACCAATCAGTGGAAATAATATCC
CTTAAACTATCCAaatataattatattttattttaaagattattagagcc
taaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047097-exon-scaffold_121-1491911889:506..1272 | TCONS_00047097-exon-scaffold_121-1491911889:506..1272 | Clytia hemisphaerica | exon |
| TCONS_00047097-exon-scaffold_121-1510915933:506..1272 | TCONS_00047097-exon-scaffold_121-1510915933:506..1272 | Clytia hemisphaerica | exon |
| TCONS_00047097-exon-scaffold_121-1575043694:506..1272 | TCONS_00047097-exon-scaffold_121-1575043694:506..1272 | Clytia hemisphaerica | exon |
| TCONS_00047097-exon-scaffold_121-1491911889:4054..6762 | TCONS_00047097-exon-scaffold_121-1491911889:4054..6762 | Clytia hemisphaerica | exon |
| TCONS_00047097-exon-scaffold_121-1510915933:4054..6762 | TCONS_00047097-exon-scaffold_121-1510915933:4054..6762 | Clytia hemisphaerica | exon |
| TCONS_00047097-exon-scaffold_121-1575043694:4054..6762 | TCONS_00047097-exon-scaffold_121-1575043694:4054..6762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:506..6762 + |
Blast
The following BLAST results are available for this feature:
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