TCONS_00047063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047063
Unique NameTCONS_00047063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047063 ID=TCONS_00047063|Name=TCONS_00047063|organism=Clytia hemisphaerica|type=transcript|length=1214bp
ctcAAATAAGATAAAACTAGTTACAAACTAATCCAACTATGACTTCGGCA
ATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATACACCAAT
ATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGGAAAGCT
CGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAACGAGCT
AATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTCTACAAA
AATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTTCAAAGA
CATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGTCCTAAT
ATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGCCGGTAC
CTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTGCGACAC
CTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACAGGAGCA
TTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGATAGTGA
CTTCgataaaaagGTTGATAGGACAGCGATGCGACCGATTGCATCAGGGC
AACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCTACTGTCGTGT
GGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGTGTTTTCTTAGGTGC
TGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGCTTCACCT
ATTGGCCTCAAATATTTCTAGGACAAAGTTGATGATATACAAGTGGGCGT
AAAATCAACCGCCCTCTTCATGGGTGACCGCACAAAGATGTGGTTGACTG
GCTTCTCTACCACTATGGTAGGATGTCTAACAATGGTCGGACTGATGAGC
GAGCAATGTTGGCCTTACTATGCATCTTTGGCTGGTATTTCTACTCATCT
AGCATGGCAGATCTACACGGTGAATCTTGACAACCCAACAGATTGTTTTT
CCAAATTCTCATCGAACAGATATCTGGGTATGGTTTTAACAACTGCTATC
ATATGTAGTACTTTACTCAAAACGTGAtgaatatttttcataattgtaaG
AAAtgttttctcaagatttttcatatatttttttaatctttgcaATCTTT
ATTTTTGTACATACATTTTATAGAAAGCTTGTCATGCAAACAAGAGAaac
tttcattcaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_120:357651..361713-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047063 ID=TCONS_00047063|Name=TCONS_00047063|organism=Clytia hemisphaerica|type=transcript|length=4063bp|location=Sequence derived from alignment at scaffold_120:357651..361713- (Clytia hemisphaerica)
CTCAAATAAGATAAAACTAGTTACAAACTAATCCAACTATGACTTCGGCA
ATAAGAATGACAAAAGCAAAACTTCACAAGCCACAATACTATACACCAAT
ATCATCTTCCTTGTACGATCACCGCCTGTTCCATCACAGAAAGGAAAGCT
CGACATACAGGAATCATGGCTGTAGATGTGCTTTTGACGATAAACGAGCT
AATGTCAAATCAAGAAACTTTCTTCCTAGTAACCAAGCGCTTTCTACAAA
AATAACTTCATCAGACTTTCTATCAATCAATGGCACTGCACTTTCAAAGA
CATTTCAACGCCAGAAGATTACAAGCTCTATATATCAGCAGAGTCCTAAT
ATCATAAAACCGTATTTATCTCTCGTGCGTTTTGATAAGCCAGCCGGTAC
CTGGTTACTTTATCTACCCTGTACTTGGAGTATATGCCTCGCTGCGACAC
CTGGACATTTCCCAGATCTGAAAATGTTGGCACTGTTTGGTACAGGAGCA
TTTATAATGCGTGGTGCTGGCTGTGTGATCAATGATATGTGGGATAGTGA
CTTCGATAAAAAGGTTTTTTTTCTTTAGTTATATAATCTGATTGGACTTT
TTGCAGAAAGTTAGGGTGAGACAATTAGTAACTATTTTAGTGCAAAACAT
CTCGTTCCAAAACGAAGCGACATCGACGTTCATTCATTGGTTAGTCTCAA
AACCAATAGAATAACTTCTTTATTCCATATTGCGGAAAGGGGTCTGACCC
CGCTTATAAAATGACCCCCCCTTCTTGGCATCCCCCCAACCTTAAGAAAT
GCCTGTCCCCAAGGGTTTTGGGCTAAATTTTCGAAAATATATACTGTATA
AGTGCGATCCGATAATCCCCTTCTCGCTGCTACCCCCTTCTAAAAATCAA
CCCCCTTGTTTTCTCTCTCTATTTGTTTATGGTAAAAAGGGAAGGGAAAC
AGTAAAGAAAAATAAGTCTGGCAATAGCGCACCGCGCTGAATCTAAAAAT
AGATTTTATTTTTGACATAATCAATACTCTCGATGTGTTTGTACGAGTTC
CAATCCCATCAACCTTTGCGTTAATCTCTTTTGCACGTTAATTGCATCGT
TTGACAAAAGATATATAACAGCTTGCACGTATTTTTAATTGAGCCCCGTT
GAATTGTGGGATTGCAACTCGTACAAATGTCAAAAAAGTGAAAAGTAATA
ATGACGTAAGCGTTGCGGAGTGCTATTATATGTAAGCCCCCCCTTCTTAA
ACGATCCCCCTCCTTGCTATCCCCCCTTTTTAATGAAAATTTCTGATCCC
CCCATTCTTCACTTTTTTGAAGGTGTCAAAAGGGGGGGGGGTCCGGACTA
TGTATTCCGCTTCAGAAAAATGAAGAACCATAACTGGTGAACATGTTTTC
AACTTTTTAAACTCATCTTAACAAATGAAATTCATTTCTTTAAAAATTTA
CATTTTTTATCGTGATCCTGATGAATTCCAATCTTAATTAAAATTTGTTT
CCATTTTTTACTTCACATGACAGGTTGATAGGACAGCGATGCGACCGATT
GCATCAGGGCAACTGACGCATGCACAAGCAACGGTGTTTCTTGCTGGTCT
ACTGTCGTGTGGTCTCGGCGTGCTTCTGTCTCTTAATTGGTACAGGTATG
TGTCTTTACATCTTCATAAGAATTGTAAAAGCAGACAAAAGAGTAGAATA
TTATGATACAGTAAGGACTCCATAACTTGAACCTCTGTTACTCGAATGTC
TCATTAACTAAACAAGTTAGCTGCTGGTCCCTTCATTAACAAACTGTTAT
AAGTAAGTCTCTATAACTCAATTTCTATAACTCGAACAAATTTGCGTTTC
CCGTACCTGTTCGAGTTACGAAGATTCCTTTGTATTACGTTTTTAGTGTC
TCTTATCTGTTATGATAATGATATTATTTTGCTTGTGTTTAGTGTTTTCT
TAGGTGCTGCATCAATGGGTTTGGTGGTCGCTTATCCTTTAATGAAACGC
TTCACCTATTGGCCTCAAATATTTCTAGGTAATATTATGCTTTCTTTGTT
TGTTTTGGACAAGTCTTAATTGTGCGCTGTTTTAACAGTACGGAAATTTT
GGGATTAAACATTTTATCCTTATAATACATTGTCAAGAAATCCAAGTGAT
TCTTGCTGTGACGATCATTAGATATTGTCTCTTAAATCTAGGCGTAGTTT
TTTAAATACACACACATGCCTGTAGATAAATCTTTACGGGTATAAACTCC
ATCAATTATTTGGCCATTTTGCATGGTTTCATTCACTTTCATATACTCAT
TCACACAAAACACGCACACGTTTCACACCATTAGCCATTACACTTAACTG
GGGTACACTTTTCGGTTGGTCTGCTATACGGCGTCTGATTGGTCTATTTG
TATACCACTTTACACAGCGGCCGTTGTCTGGACCATTTACTCACACCAAG
TAGTAAAGACCATTCCAAATGTACGGACCTTGTATCTAAAATGAATGAAA
GGTTGACTTTGACTGTTGCGTCAAGTTACGTCACTGTCTGATGCCATTGG
GAACAGATATTTTTACGTAATCCGTCCTCGTAAACTCGGATTAAAACCCC
TTGCATTAGATCAGTTTGTTTAACTTGTGTCTTTGATTATCATGTCCTTT
TGATTCCTTTCCTTTACCCCTCATTTTAGGCTTAACTTTTAACTGGGGAG
CATTGTTAGGTTGGACGGCAGTCCAAGGAAGCTGTGATTGGTCAGTGTGT
CTGCCACTTTATACTGCTGGAATATTGTGGACCCTACACTACGATACTAT
ATACGCTCACCAGGTAGCTAGAAACCCATTTTTCTTTCATACTCTTTGAT
AATATGGCTAAGACCTTGCAACTACTGTATAGAAAAACTTCACAATCTTT
CTCGACCATAAAAAAATTGGCTGCTTTGGACTGCCGTTGCAACTTTTCAA
TATACTATTCTGGCATTAGTTGCAATTTGTTGAATGAAAAGTTCGGCACC
AATCTTTTAGATTTTATCCAAAACTGATAACATTGCACTATCTGGTGTAT
TTTAGGACAAAGTTGATGATATACAAGTGGGCGTAAAATCAACCGCCCTC
TTCATGGGTGACCGCACAAAGATGTGGTTGACTGGCTTCTCTACCACTAT
GGTAGGATGTCTAACAATGGTCGGACTGATGAGCGAGCAATGTTGGCCTT
ACTATGCATCTTTGGCTGGTATTTCTACTCATCTAGCATGGCAGGTAATT
CCCTTCAAGTAATGGGTAATGGAGNATGCATCTTTGGCTGGTATTTTAAC
TCATCTAGCATGGCAGGTAATTCCCTTCAAGTAATGGGTAATGGAGTAAG
CTTTATGAGGCATTTTTAACTGAAAGGGTCGAGTTGGAGAGATTCCACTG
TATCTAGCTGTAAAGTGATTCAAATTACTCTCTGTAGTTCGAATCTTTCT
CTAATTTGAATACAGCTTTTGGTCCCTGAAGATCAGATTAGAGAGAGTCA
ACTGCGTAAGCAAGCGGACTGAAAATCTCTGTCTTACTTTTCATCGTTAC
CTTCTTTTATTCCTATCAGCCACAGACTTTTACTCTACATTTTAACTTTG
CAAATAGCCTGATTTTCGTGGTATAAGCTTCTCTCAAGAGTTATTTAGTG
AATTTAATTAGTGAGCTGCCCTCCCTCCCGAAGGCATATTGAAATCTAAA
AATTTGCACTTAAAATTGTAACATACTGTTAGAGGAGATATTTGAAAACA
GTGTCATTTGTAAGTGTTTAAGAAACTTATATGCTTATCAAATTTACTTA
TTCTTTCAGATCTACACGGTGAATCTTGACAACCCAACAGATTGTTTTTC
CAAATTCTCATCGAACAGATATCTGGGTATGGTTTTAACAACTGCTATCA
TATGTAGTACTTTACTCAAAACGTGATGAATATTTTTCATAATTGTAAGA
AATGTTTTCTCAAGATTTTTCATATATTTTTTTAATCTTTGCAATCTTTA
TTTTTGTACATACATTTTATAGAAAGCTTGTCATGCAAACAAGAGAAACT
TTCATTCAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030007XLOC_030007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047063-exon-scaffold_120-1575043694:361151..361713TCONS_00047063-exon-scaffold_120-1575043694:361151..361713Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1575043694:360069..360190TCONS_00047063-exon-scaffold_120-1575043694:360069..360190Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1575043694:359686..359771TCONS_00047063-exon-scaffold_120-1575043694:359686..359771Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1575043694:358470..358658TCONS_00047063-exon-scaffold_120-1575043694:358470..358658Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1575043694:357651..357904TCONS_00047063-exon-scaffold_120-1575043694:357651..357904Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1510915933:361151..361713TCONS_00047063-exon-scaffold_120-1510915933:361151..361713Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1510915933:360069..360190TCONS_00047063-exon-scaffold_120-1510915933:360069..360190Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1510915933:359686..359771TCONS_00047063-exon-scaffold_120-1510915933:359686..359771Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1510915933:358470..358658TCONS_00047063-exon-scaffold_120-1510915933:358470..358658Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1510915933:357651..357904TCONS_00047063-exon-scaffold_120-1510915933:357651..357904Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1491911889:361151..361713TCONS_00047063-exon-scaffold_120-1491911889:361151..361713Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1491911889:360069..360190TCONS_00047063-exon-scaffold_120-1491911889:360069..360190Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1491911889:359686..359771TCONS_00047063-exon-scaffold_120-1491911889:359686..359771Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1491911889:358470..358658TCONS_00047063-exon-scaffold_120-1491911889:358470..358658Clytia hemisphaericaexon
TCONS_00047063-exon-scaffold_120-1491911889:357651..357904TCONS_00047063-exon-scaffold_120-1491911889:357651..357904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:357651..361713 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.63109	4.66938	3.72614	5.12854	0	0	0.317697	0	0.3529	0.724144	0.0370548	2.0047	0	0	0.593664	0	0	0.764832	0.868677	0	0.577755	0	3.37932	1.45549	0.735715	0	0.0515868	3.35905e-07	0	2.34967
Blast
[Close]
BLAST of TCONS_00047063 vs. Swiss-Prot (Human)
Match: COQ2 (4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.446e-54
Identity = 96/151 (63.58%), Postives = 117/151 (77.48%), Query Frame = 3 
Query:  321 TSSIYQQSPNIIKPYLSLVRFDKPAGTWLLYLPCTWSICLAATPGHFPDLKMLALFGTGAFIMRGAGCVINDMWDSDFDKKVDRTAMRPIASGQLTHAQATVFXXXXXXXXXXXXXXXNWYSVFLGAASMGLVVAYPLMKRFTYWPQIFLG 773
             +++   +P  ++PYL L+R DKP GTWLLYLPCTWSI LAA PG FPD  ML+LFGTGA +MRGAGC INDMWD D+DKKV RTA RPIA+G ++  Q+ VFL G L+  LGVLL LN+YS+ LGA S+ LV+ YPLMKR +YWPQ+ LG
Sbjct:   60 AAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALG 210

HSP 2 Score: 107.071 bits (266), Expect = 9.728e-26
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  772 DKVDDIQVGVKSTALFMGDRTKMWLTGFSTTMVGCLTMVGLMSEQCWPYYASLAGISTHLAWQIYTVNLDNPTDCFSKFSSNRYLGMVLTTAIICSTL 1065
            DK DD+ +G+KSTAL  G+ TK WL+GFS  M+G L++VG+ S Q  PYYA+L  +  HL  QIYT+++  P DC++KF SNR LG+++   I+   L
Sbjct:  255 DKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGIVLGNL 352
The following BLAST results are available for this feature:
BLAST of TCONS_00047063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COQ24.446e-5463.584-hydroxybenzoate polyprenyltransferase, mitochond... [more]
back to top