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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049213 ID=TCONS_00049213|Name=TCONS_00049213|organism=Clytia hemisphaerica|type=transcript|length=2513bpRun BLAST on NCBI transcript from alignment at scaffold_154:90404..105716+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049213 ID=TCONS_00049213|Name=TCONS_00049213|organism=Clytia hemisphaerica|type=transcript|length=15313bp|location=Sequence derived from alignment at scaffold_154:90404..105716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049213 vs. Swiss-Prot (Human)
Match: NOS1 (Nitric oxide synthase, brain OS=Homo sapiens GN=NOS1 PE=1 SV=2) HSP 1 Score: 445.277 bits (1144), Expect = 5.135e-137 Identity = 243/524 (46.37%), Postives = 335/524 (63.93%), Query Frame = 3
Query: 117 NVRFAVFGLGSRAYPNFCSFAHIVKRLLKSLGGEEIHETGEGDELCGQESSFNEWAAGAFKAACDSFGIYD-VDMKXXXXXXXXXXKDWKKGLFRLSKTPVGNESIPEALSKLHRKKVVPAKCISVQNLQSSQSDRVTNLVKIDRCGHDEIMYKAGDHLSVYPTNEKVLVDALLDRVICDVGYDDCVTMEIKE--------VDKWVQSNKIPFVTTLRQMITSYLDITSPPSPKLLAVFSEEATNEEEKYELELLSTDNDKYEDWSHANYPNIVEVLEKFKSVACDVTMLINHLPLLNPRHYSISSSQDLHPSEVHVTVALVSYEIK---GNTHNGVCSYYLSNLKPNDVVYCNIRKASSFYLPTDRSSPVIMIGPGTGIAPFRSFWQQALFEHTENKDSVKRDMTLYFGCRNSKHDDIYAKETTELVNQKILSSVRTAYSREENLPKTYVQQILHQDM-EKVGETILDKQGHVYVCGDVTMASDVSKMITKILQEYAALSDEEAKQFISELRTSKRYHEDIFG 1649
NVRF+VFGLGSRAYP+FC+F H V LL+ LGGE I + EGDELCGQE +F WA FKAACD F + D V+++ A +S+ S+ + WK+ FRL+ E + + LS +H+K+V A+ +S QNLQS +S R T V++ G E+ Y+ GDHL V+P N + LV+AL++R+ + V +E+ E + W ++P T Q YLDIT+PP+P L F+ AT+E+EK L +LS +YE+W P IVEVLE+F S+ T+L+ L LL PR+YSISSS D++P EVH+TVA+VSY + G H+GVCS +L+ ++ +++V C +R A SF+LP + P I++GPGTGIAPFRSFWQQ F+ ++K M L FGCR SK D IY +ET + N+ + + TAYSRE + PK YVQ IL + + E V + ++ GH+YVCGDVTMA+DV K I +I+ + LS E+A FIS +R RYHEDIFG
Sbjct: 881 NVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKANNSLISNDRSWKRNKFRLTFVAEAPE-LTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPVNQMVKVELLEERNTALGVISNWTDELRLPPCTIF-QAFKYYLDITTPPTPLQLQQFASLATSEKEKQRLLVLSKGLQEYEEWKWGKNPTIVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYRTRDGEGPIHHGVCSSWLNRIQADELVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFD-IQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDKPKKYVQDILQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSAEDAGVFISRMRDDNRYHEDIFG 1401 The following BLAST results are available for this feature:
BLAST of TCONS_00049213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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