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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048511 ID=TCONS_00048511|Name=TCONS_00048511|organism=Clytia hemisphaerica|type=transcript|length=1712bp
GAATACATGTGAACATTATAAAGACGAGGGCAAAGAGAAATGGGATTTAC
AAAGAAACTATTAAGgCATGTCTTCTCTGAAAGACTTATCGACAAAATCC
GTGAAAGAAGCGATTCATTATTTCTCAGTCCCAGTCCCCGGTTAAGTCGA
AAGCGTGGTAGCAGTGCAGGGCCATCAATAATCGAACCTCAAGGACATCA
AAGAATTGTGGTTTTAGGACCGAGCAGTGTTGGAAAATCAACCATTTGTG
CAACATACGCCGGTGTAGATTATGATTTAAGTGCTTTACGATACAGCAAG
AAGAATGAGATTTACAACAGCGGTGTATTTATACAAAGCGAGACGGCAAA
CCATGTTAAACAATACAATATTGAAATATCAGTTCCAAAAGGGACACGGT
GGGACGGTACGGTGAATGGATATAAAGAACTTTTATTAGAATCTGATGGA
TATTTGTTAGTGTATTCTAAAGAGAATAGACAGAGTTATATGAAATTAGT
AGAACTTGTGTCCGATATACAAAAACTACGGAAATGTTGTATTCCGCCTA
TTGTTGTGGTTGGTAATAAAGACGATTTGGATTTCAGTAATACGTTAGGT
ATACACGATTCAGAACATCATGTTTTAGGAAGCTTTCCGCATTTCAACGT
GTCCGCATTGGAAAATGACGGACTTCAGGAAGCTTTTAAATGTTTAGTAC
AAATGGTGgcacagcaaaaaatcttgacGCTAACGTGACATTGGTGACGT
AAAATTGACGATGAACCGAAAGAGAGATGACAACGCTTGAACAGATAAAA
TAACACTCAGTTAATACAATGGATCCCGCGAGATGCAGAAAATTTATACA
TAATTCTCTCCGTTCCAAGTGGAGATTTCGAATGACTTTGTTTAGAAGGC
ACTATTATCATAGTTCAACCTTTTTGACAAATGACTTCAAAATCATATGA
GAAGTCATGGTATGAACGCCCTGGGATCACAGACATGATTCAAAACATTC
TTAAAGCATGCGACGTTCTTTTAAATTTGAACCAAATACCCTTATATGGA
AGACTTACTAAAGGCGGAGGAAGACACTATTTAATATGacgagaaaattg
aaaatttgtaaattgatatTTAAAACGGttctttttatttatgtttaaag
ttttttatatttgttttaATTACATATCTTTTGACTGACTTAATATGACT
TTATAGCATGATGTATATACAAAGAGAATTcgacaaatcaagaaaaaatg
gCATAGTTGTATCATTTTATGTATTTAGATCGAATCCAGTCCAATCCAAA
AGCAAGGTTGTTTTTTACCGTCCATGTGAAAATAATAGATTCAGCTGAGC
TCAAATATCCATTTTAGAAAATAACACCGATGTTTCAATCCTTATACCGT
AAATGTACGAATTCTGCGAATTGTGAACCTTTAAAAAATGTCTCTCATTT
TTAATACGTAATATGGGGTAAAAAGGTCATACGGATAACCAATATTGTAG
TAGCCTCGATTCTACTATTAGTCTTTTATACAAGCAAGAAAGCCCCCTGG
TTGCAAGTTTCGTAGCAAAAGCGACAAACAAAACTGAAATTCGATACCAG
TATGATCCATTGTTACTCTGCCTCTGCCACGATAGGGTCACGAGCGCATT
GGAAAGCCGAAACAAAAGCTCCCAGTTGAATCTTTTCCGATGTGCCAGCA
GCTAAACGGAAC Run BLAST on NCBI transcript from alignment at scaffold_143:376828..378736+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048511 ID=TCONS_00048511|Name=TCONS_00048511|organism=Clytia hemisphaerica|type=transcript|length=1909bp|location=Sequence derived from alignment at scaffold_143:376828..378736+ (Clytia hemisphaerica)
GAATACATGTGAACATTATAAAGACGAGGGCAAAGAGAAATGGGATTTAC
AAAGAAACTATTAAGGTAAGATGAAAGATGAAAACAAGAAATTGAAGCAA
TCATAAGGATAGTTGTTCGAGTTCTAAATTTCAAGGTTCCAAAGGGGAAG
ATCATTTAGCCGTTATATGTTAGTGGGCGTAAAAACCAGACAACAAGAAA
ATTGTATCTGAAGTTCTTAGTCTATGAAGATTTTAaccctttttcttttc
atttatttttaggCATGTCTTCTCTGAAAGACTTATCGACAAAATCCGTG
AAAGAAGCGATTCATTATTTCTCAGTCCCAGTCCCCGGTTAAGTCGAAAG
CGTGGTAGCAGTGCAGGGCCATCAATAATCGAACCTCAAGGACATCAAAG
AATTGTGGTTTTAGGACCGAGCAGTGTTGGAAAATCAACCATTTGTGCAA
CATACGCCGGTGTAGATTATGATTTAAGTGCTTTACGATACAGCAAGAAG
AATGAGATTTACAACAGCGGTGTATTTATACAAAGCGAGACGGCAAACCA
TGTTAAACAATACAATATTGAAATATCAGTTCCAAAAGGGACACGGTGGG
ACGGTACGGTGAATGGATATAAAGAACTTTTATTAGAATCTGATGGATAT
TTGTTAGTGTATTCTAAAGAGAATAGACAGAGTTATATGAAATTAGTAGA
ACTTGTGTCCGATATACAAAAACTACGGAAATGTTGTATTCCGCCTATTG
TTGTGGTTGGTAATAAAGACGATTTGGATTTCAGTAATACGTTAGGTATA
CACGATTCAGAACATCATGTTTTAGGAAGCTTTCCGCATTTCAACGTGTC
CGCATTGGAAAATGACGGACTTCAGGAAGCTTTTAAATGTTTAGTACAAA
TGGTGgcacagcaaaaaatcttgacGCTAACGTGACATTGGTGACGTAAA
ATTGACGATGAACCGAAAGAGAGATGACAACGCTTGAACAGATAAAATAA
CACTCAGTTAATACAATGGATCCCGCGAGATGCAGAAAATTTATACATAA
TTCTCTCCGTTCCAAGTGGAGATTTCGAATGACTTTGTTTAGAAGGCACT
ATTATCATAGTTCAACCTTTTTGACAAATGACTTCAAAATCATATGAGAA
GTCATGGTATGAACGCCCTGGGATCACAGACATGATTCAAAACATTCTTA
AAGCATGCGACGTTCTTTTAAATTTGAACCAAATACCCTTATATGGAAGA
CTTACTAAAGGCGGAGGAAGACACTATTTAATATGacgagaaaattgaaa
atttgtaaattgatatTTAAAACGGttctttttatttatgtttaaagttt
tttatatttgttttaATTACATATCTTTTGACTGACTTAATATGACTTTA
TAGCATGATGTATATACAAAGAGAATTcgacaaatcaagaaaaaatggCA
TAGTTGTATCATTTTATGTATTTAGATCGAATCCAGTCCAATCCAAAAGC
AAGGTTGTTTTTTACCGTCCATGTGAAAATAATAGATTCAGCTGAGCTCA
AATATCCATTTTAGAAAATAACACCGATGTTTCAATCCTTATACCGTAAA
TGTACGAATTCTGCGAATTGTGAACCTTTAAAAAATGTCTCTCATTTTTA
ATACGTAATATGGGGTAAAAAGGTCATACGGATAACCAATATTGTAGTAG
CCTCGATTCTACTATTAGTCTTTTATACAAGCAAGAAAGCCCCCTGGTTG
CAAGTTTCGTAGCAAAAGCGACAAACAAAACTGAAATTCGATACCAGTAT
GATCCATTGTTACTCTGCCTCTGCCACGATAGGGTCACGAGCGCATTGGA
AAGCCGAAACAAAAGCTCCCAGTTGAATCTTTTCCGATGTGCCAGCAGCT
AAACGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048511-exon-scaffold_143-1491911889:376828..376892 | TCONS_00048511-exon-scaffold_143-1491911889:376828..376892 | Clytia hemisphaerica | exon |
| TCONS_00048511-exon-scaffold_143-1510915933:376828..376892 | TCONS_00048511-exon-scaffold_143-1510915933:376828..376892 | Clytia hemisphaerica | exon |
| TCONS_00048511-exon-scaffold_143-1575043694:376828..376892 | TCONS_00048511-exon-scaffold_143-1575043694:376828..376892 | Clytia hemisphaerica | exon |
| TCONS_00048511-exon-scaffold_143-1491911889:377090..378736 | TCONS_00048511-exon-scaffold_143-1491911889:377090..378736 | Clytia hemisphaerica | exon |
| TCONS_00048511-exon-scaffold_143-1510915933:377090..378736 | TCONS_00048511-exon-scaffold_143-1510915933:377090..378736 | Clytia hemisphaerica | exon |
| TCONS_00048511-exon-scaffold_143-1575043694:377090..378736 | TCONS_00048511-exon-scaffold_143-1575043694:377090..378736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:376828..378736 + |
Blast
The following BLAST results are available for this feature:
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