TCONS_00004667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004667
Unique NameTCONS_00004667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004667 ID=TCONS_00004667|Name=TCONS_00004667|organism=Clytia hemisphaerica|type=transcript|length=807bp
gatNTACAAAAGAAGAGACATATGCCACAAATGGGTCATGGAGGACCTCC
TATGATGGGTGGGCCTCAAGGCCCAGGGTTTGGCGGCCGTGGACCATCAC
AAAGTGGTCCAAGAGGGCCTCAAAATAATTACCGTGCACGAAACCCAAAT
AATCATGATCAAATGAACCAACTGAACCTCAACAAAGCAAGAGCTGCCCT
TCAAGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGTG
GTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGCGTCCT
CCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCGGTGGTGATAT
GCAACACAGACCTCGTCGTTAAAcacaaataaatttcaaaaatctctttg
aaATTTTATTCGATAATCTAATCTACTGAAGTGAACTGACAAGCAAAGAT
gactttttagcttttttaaagaacttGCTTTTAAATGGTTTTATGAACAA
GGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCCTGAATACATT
GACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCAAAAGGATATC
ATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGATTGAGTCTCA
NTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTTGTTTC
CTGAGATCGAGTCTTGTGCGATAACTCAAgtatttttaatatatttttgg
tattactttttgcttttatGAAACCtgatttttatttaaataaaGCTATT
AACTGAG
Run BLAST on NCBI

transcript from alignment at sc0000047:121143..125618-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004667 ID=TCONS_00004667|Name=TCONS_00004667|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at sc0000047:121143..125618- (Clytia hemisphaerica)
GATNTACAAAAGAAGAGACATATGCCACAAATGGGTCATGGAGGACCTCC
TATGATGGGTGGGCCTCAAGGCCCAGGGTTTGGCGGCCGTGGACCATCAC
AAAGTGGTCCAAGGTAAGGTCCTTACAATATGAAGACACGCTAGACAAAC
AACCTCAAGTTCCTATCTCATCAAAACTTTCATGGCAAAGCTTTATTCCA
ACTTTTTCAGTCAGGTAGACCAACAAGGCTTGTATATTTTGAAGCAAAAC
ACCATGGACTTTGGCTTTTTTTTGGCTTTTTTCGTTAGGGTAACATTCAA
TCTTCAATACTTACTATTTTATTCATTATTTTAGAGGGCCTCAAAATAAT
TACCGTGCACGAAACCCAAATAATCATGATCAAATGAACCAACTGAACCT
CAACAAAGCAAGAGCTGCCCTTCAAGTAAGAATCATTTAAGGATTGTCTT
TACACTTGATGTATGGTGTTTGTTTTTTCAATATAACTTTTTTTCCTGAA
ATTTTTTCATAATAAAAGTATATATTTCCTGAAAGCCAATAAAATTATGT
AGATCAAATGCAATCAATTAGGATTATTATGCACAAAGTGAGTAGAAATT
ACAAAGCTTTGAAAAATATAACGTTTGTTAACTTCAAAGAGTTCCACCTT
CCCAACCACTTACTTTTTCATTATGATTTTTTTGCCTTCTGACTAAGCAA
AAGTTGTTCTAAAAAAGGCTGCCTCATTTTTTTGAGTTAGGTCCTAGGTA
AAAAATAATAGCTAAAACGTATAATTTTAAAAAATTTGACAGACTTTTGT
CTTTATCCCTCAATAAAAAGATAAATAGGACCTTGCTGTAACTTGTGGGA
GAAGGAACTTTTTGAAGGTAGGAAGGTACGCTCAAAACGGTTATTGCAGA
AAACAACTTTCAAGATTTTTCTCAGAACTAAATTTGGTTTACTGAAGAGA
TTAAACATAAAAAGAAAGGGATGTGAGTTTTCAATAAAAGAAATTTTGAT
AAGGTTCAGTAAACACAAAAAGTGAGGCTTTTATATAAATGGAAATATTT
CGAAAACCATAAACAAATCTATATTTCTGACTTAAGAATATGATGCAGAA
CCAAAATTTACATATTCTGAACGAAAAAACTGGTTTTGAGTGTAAAGACA
GTTATTAATAGCAAATAATGTAATTTTTGTACTGAATAATAGTTTCTTGG
GTAATGTTCCAACAACCATCATTTTTAATGGACTGTTGTAAGTGAAAAAT
AGCTGCTATTCATACTTTAGTATCATTTTTCTCTTTTTCTCTTTTCTAGA
ATGCTGGTTTCGGGGTAAGTACTGCAATTACTTCTGTTTTTTGTTGTTTT
TTTCTTCCTCTGCTATTCTACTTTCAAAGGAACAGATATACCGTGAAAGT
TTCCTTACTAGAAAAGCAAAAATTATTATTCCTTCTTGCAACCCAAAACA
ATAGATCTTAACTGTTGTTTTGGTACAAAGTTTATTGGAGATATTTTCAT
AACTAATTAGTCTTTTCTCAGTATCACTTGTACAAATTCAGATGATAAAT
TTGATAATTTGTTTCATTTTTATTGTATTGTTAAGTGGATAATAATATCC
TTCTTGCAACCCAGACTAGTATTTATTTTGATTGCTATTTTGGTACACAG
CTAAGGAGATATAATTGTATGATTTTTAATTTCCATATTTTTTATTAATA
ATTTACTTCAAAACAACACTTTTGGGGATATCATTTATTGCAATCTCTCT
TTTGTTTGAAGTGAAATTAAGATCCTTCTTGCAACCCAAATCAAACTGCC
TTGTGTTTGTTTTTGGTACTATGTTATAGGAGATATTCACATTTTGGCTT
TGTTGGTTATTATTAAGGCCATTAAATTACCTTCATAAAAAGCACAAAAT
GTTTAGTTTGCTGAATAACCCTTTTAAAAAAAGGCATAAGCGATGACAAA
CAAATATATTTTTAAGATCAGCCAAATCTGTTTTCATTTTTTACAAATGT
TATCTTTGTTTATCAGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTAC
AGCATCAAGGTGGTGTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATG
AGAATGGTATGATACAGTTTCTACCAAGAACCTAGTCTTTTTCAAAGTTT
GTTTTGGCCTCTATAAGACTTAAAGTGTATTTAATGGTCTCAGTTTGGAT
GTGTTCCATGCACCTGAAAATCTGTTCATCAGGCCTAATCAGACAGATAT
ACTGTGAATTGCTCAATTAATTTAAAGGTGGTATTGCTGCATGTTTTTTT
TATTGTTAAACTTGTCGATACTTGCACTTGCAGAATTTTAAGAAAAATCT
TTGAATTGTTGAAATTGACAGTTGATTAATTTTGGGTTCGATATCTGGCC
TATGATTGTGCTTTATGATTTGTGTTGCAGTAGTTCATTTAATTTTGCCA
ATGCCCTTCTCATTGTTCTTCTTGAAATGACAATATCTTTGCCACATTAA
AGTTTTAAAATCTATGTACGAGGAAAGAAATAGAGGAATTGTCAACTTTC
TTATGAGAAAATGTAAGTTGTTCAAGGCGCAATTCAAGATAACTTATCAC
TTAGGTCTGAGTTCAATGGTCAGGGAAAACTTGGAGAGTTTGTTTTACAT
CAAACATGCATTGTCAAAATATTTACCTAAATATCATAGTAAAGAGGGGT
TCGGAATCTGGTTTATAGAGCTTCGAAACTATGAAAATGGTTTCTGTATG
AGAAATTGATCAAAACCATAGTTTCTTTTGTAAGGGCAAGACATCTTGCT
GATTTAGCCATAGCCATAGTCATAGTAAAACATCTTGATTACTACCCATA
GCTCCAATTCGTAAGCAAGTGTCAAGAAATTAAATTTTGGATTACTTTTT
TTTTTTTTTCATTGTGTGAGCTCGGGAGCAAAACCACCACTTTGAGGAAA
GAGTACTCACAGTATATCCTGTTCAAAACAGCCTATTTGAAGCAACGAAA
CTCGTAATGAAGTTAGAAAAAAATGAACTTTTAGCCAAATTTATTATCCA
ATCCTAGATAAGGTATTAAATGAGTCTGGGTCTTTCAAGCTGACTTAATA
TTTTTTTTAAAGAATGCTTTTTCCATTCAGATGAACAGATTTTTCTGGTG
CACAAAGTGGTCAAAAACAAAAGCTTAATAGGCATTTTGATATAATATGC
AAAGTCATGTCAAGAATATTTCTTGCAATTGTTAATAGTTATCCTCACTT
ACTGAGATCAATCCTAGAGGGATGATCTTACTACCTTCCCAAAACTAATT
TAAAGGATTAGCTTTAGGGGCCACTTGCATATCGATTTTTTCCACGACTC
ATGTCAAAATCATGCCAAGTCGTGGGGAACAATTATAGTGACTTTAGAAC
GCCATGAATTAAAGACATTATAGCAGAGTTTTCTGTTCTTTGAAAGCTTA
AGAATTTTTTATCAGGTTTCAAATATATCCAAGTATGTAATTCAACGCCT
TATCAGCCCTTATCAACTGTTGATCTCTGCACGAGACCCAACTCTAAGCG
TGAAGATCTGAGTATCTAGAATTTGGTCAGAAAATAAAAATATTGAAACG
TCTACCAATGACAAAACCTTTAATTTAGAAATTGCTACATTTAGACTTTT
GCTTAAGATTTCCCAGTTGAAGAGTAAGAGATTTGGTCATCATTATTAAA
CCAGACGTATTATTTAAACACGAAATTCTTTTCCCTCCCCTTAACTTGTC
TTGATAGTCCCAGAAAAACCTTCTTTCATAAGCACCTTAAGCTTCAAAGT
AATAGTTCAGAGACATTGGCAAATCCAAATTTTCAAGTTTTCATTTGACA
AAATCATAATTTCATAATTCATTACAATATTGCTGGCGCTCCTAGGCAAT
TAAACCAATCTTTCTTTTTTATTGTCTAAACTTGAATATGGTACTCATCT
AATCATCTTTTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGG
GTCCACGCGGTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAATA
AATTTCAAAAATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAAG
TGAACTGACAAGCAAAGATGACTTTTTAGCTTTTTTAAAGAACTTGCTTT
TAAATGGTTTTATGAACAAGGATGAACTGTATATATTGTGAGGTGTAGAT
TCAGAACCCTGAATACATTGACAGACAACAAACGAACTTAAACAAAAATC
TGTCTTTCAAAAGGATATCATTCCTGCAGATTCACTTGGCTTTATTTTGT
TTCCTGAGATTGAGTCTCANTTTCAAAAGGATATCATTCCTACAGATTCA
CTTGGCTTTGTTTTGTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGT
ATTTTTAATATATTTTTGGTATTACTTTTTGCTTTTATGAAACCTGATTT
TTATTTAAATAAAGCTATTAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002630XLOC_002630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004667-exon-sc0000047-1575043694:125506..125618TCONS_00004667-exon-sc0000047-1575043694:125506..125618Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1575043694:125194..125284TCONS_00004667-exon-sc0000047-1575043694:125194..125284Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1575043694:123513..123602TCONS_00004667-exon-sc0000047-1575043694:123513..123602Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1575043694:121143..121655TCONS_00004667-exon-sc0000047-1575043694:121143..121655Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1510915933:125506..125618TCONS_00004667-exon-sc0000047-1510915933:125506..125618Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1510915933:125194..125284TCONS_00004667-exon-sc0000047-1510915933:125194..125284Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1510915933:123513..123602TCONS_00004667-exon-sc0000047-1510915933:123513..123602Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1510915933:121143..121655TCONS_00004667-exon-sc0000047-1510915933:121143..121655Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1491911889:125506..125618TCONS_00004667-exon-sc0000047-1491911889:125506..125618Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1491911889:125194..125284TCONS_00004667-exon-sc0000047-1491911889:125194..125284Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1491911889:123513..123602TCONS_00004667-exon-sc0000047-1491911889:123513..123602Clytia hemisphaericaexon
TCONS_00004667-exon-sc0000047-1491911889:121143..121655TCONS_00004667-exon-sc0000047-1491911889:121143..121655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:121143..125618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
105.568	98.024	301.297	341.744	381.518	260.025	87.5579	105.568	79.5855	84.715	90.2339	115.282	127.692	122.133	99.7795	104.531	120.608	118.406	32.1161	51.7752	99.8362	107.011	127.337	112.498	86.3524	103.473	95.2464	94.5553	78.8453	89.2352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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