TCONS_00047760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047760
Unique NameTCONS_00047760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047760 ID=TCONS_00047760|Name=TCONS_00047760|organism=Clytia hemisphaerica|type=transcript|length=985bp
GCTCGCTCCGCTGTTTCTATACGAAGCTAGCCCTCAATAGAAAACTAAAT
CTCCCTTCAAAGGACTGTAACTTTAAACTCGAGTTTAATCGCTCAGCTCT
GCttgatttattttgaagctCTATATCCACTATGCTTTACGATTATATCT
CATTTGACAAGACACGGAGAGGGTTCGGCTGATTTTTGGTTGACTGTGTT
TCAGTTTTACACTCAACTTTCATTTTGGGTCATCTGTTATCTCTGTCAAG
TCAAATTCAACATGTCTATTACTTGCTACTTCTCAACTGTTTCCAGCAAC
ATGGAGatCAAGAAACATCAACAGAAGATTCAAATGGTGTTGGATGGCAA
GAAAATCCAATACACAGTCGTTGATATTTCTGCTTCAGAAGAAGGCAAAG
CAAAAATGAGAGAGATTGCTGGTGACCCAAAGGCTTTACCACCACAAGTT
GCTAACGGTGACCAATACTGCGGGGACTATGGTGCATTTGATGCTGCAGT
CGAAGAAGAAACATTGAACGAATTCCTGAAGTTATAAAATAATTATTCac
tattttaaaaacattaaaacattcACACAGATCAAATATCCCAACAAACA
CCAACGGTAAATGCATGATCGCTTAGTAAAAAGACAATACCTACGTAAAC
GCTATCTCAAAACTTCCATCTTGTCTCTTGTTTCTTGTGATGAAGAGTTT
ACtcgaaaatataattttatcaCTATTTTATAGTTTATTATATATGCCAA
ATATTATATTATTTGTTCCTATACTTTTTGttcaagtttttatttatttt
ccagaatgaattttcttaattttgtaTTCTATTTTCTTCTGTCAACTGTT
CCTATTTCTAGTCTTTGTTAcaacaaaatgaaatttaactgaTGGTCCAT
CATTATTTGCAATTTATTTTTAAGTCttgaaatacaaaatcaaatGTACA
TAAAATGTCAAATATTATAAACTATGAATTTCGAT
Run BLAST on NCBI

transcript from alignment at scaffold_136:95046..99496-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047760 ID=TCONS_00047760|Name=TCONS_00047760|organism=Clytia hemisphaerica|type=transcript|length=4451bp|location=Sequence derived from alignment at scaffold_136:95046..99496- (Clytia hemisphaerica)
GCTCGCTCCGCTGTTTCTATACGAAGCTAGCCCTCAATAGAAAACTAAAT
CTCCCTTCAAAGGACTGTAACTTTAAACTCGAGTTTAATCGCTCAGCTCT
GCTTGATTTATTTTGAAGCTCTATATCCACTATGCTTTACGATTATATCT
CATTTGACAAGACACGGAGAGGGTTCGGCTGATTTTTGGTTGACTGTGTT
TCAGTTTTACACTCAACTTTCATTTTGGGTCATCTGTTATCTCTGTCAAG
TCAAATTCAACATGTCTATTACTTGCTACTTCTCAACTGTTTCCAGCAAC
ATGGAGGTAAAGTCTTCTTTTGATTCTGTTTGATTTTATCCAAGAGTTTA
GGCCTCATAGTCATATGATATTTCCAGCAACCTCAGTCCCAAAGTAAAGT
CTAGAAAGACATGAAATAGAAGGCTCTGTGTAATGGACAGTTCCAGAAAA
AGACCATTACCCCCTGAAGACAACATGGTTTTTTGGAATTTTTTCCACTT
GGAAATCCTAAGAAATTTTGGAAAAGGTTCTTTCTAAGGATTTTCCTAAT
TATTTGGTTGTCATCTGTATCGGGAAATCCAAGACTTTTCCTTAAAAAGA
ATCTTTAATGTTGAGGAAATGTTGAAGTTTTCAAAAGCTAATTGTTATGG
ATATCCATGTGGGACACTTGGAACAGCCCAATCAATAGCCCCCCCTGCAT
TTTTAAGTCATTGCCTTGGACTATAAACGCTATAAGTTACTAAATATCCT
CTAGCTGTATAACTATGCCCATTTGGTGAGTTGAGGGTACTGTGAAGTCG
GATAACTTGCATCAATGGAGGCTAACATACATAGCCCTCAAATGAGTGAC
CTCTTCTGGTCCTTAAGTTAAAATACAAAGTTAAATCAAAACAAAAATGG
TAGAGTAGAGCTGTGAGCGAAACTGCGTAGTTCATTTGTTTTGAAATTTT
GCTGCTTTGATTGGTTAGTCATTTGAGGACTAAGCATGTTAGCCTCCATT
GATGCAAGTTACCCGACTTCACGATACCAAGCCATTTTTCAGGGGTGGTT
GATAAAATACCACAGCTTTATATAAAGAGCTGTCACAGAAAGACAACACG
ATGTCTGAGAATTTATTACAGCTCCCCTCCCCTTTGCAAAATCTAATCTT
TTCCAGTTCTTCTTCTGGTGGGTTGTAACCCTCTTTGACCATTTGAAAGC
CATTAATAATACCATAGACCTTTTCGCCTTTCCATCCGCCATCTTGAATT
GTATGCAAAAATATAGGAACGAAAAAGCTGTGGTTTGATTTAGTTGGAAA
ATATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGACAACAAAGC
ATCTTATAAATAAATTTTATAATCATTAGAACAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAGCCTTTTAGGAATTTGTTCTTAAAGACATTGCA
TATTCTGTTTTCATGCCATTAAAAAATTCCACGAAGACGGAGTACACACA
TCAACTTTCAAAACATGCAAACTGAAAGAAGTAATTATGACGTCACTCAT
TCAGCGGGTTCAGATCGATGTTTTGATTTGATCGTTTGGCGGTTCTATTC
CCAGGAGAATAATTTACCGTCAGCCGAATAAGGATTATTTTTGTACCTTC
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTATTTTTGTACCTTCGTGGGTGATTTTTC
AGCTTGAGTTTATGTCTAATGTTATGGTTTTTTGAAGTGCTTGTTCTAAG
AAGTGGGCGAATTTGATTATTTTTTCTAGTTTTCAAAAGAAGCAAATTTA
ATCTTTCTTCTACAAGATTACTTTAATATAATGCTAATTATGCATGTAAG
TTTTATATTAATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGG
AATTTCACCACGGCAATTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCGCTTGTTAATTTTT
CAATTTTTTTCCAACCCCTCGGACGTTATTAGGACCCCCTCATTTATTAA
TTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACTCT
AAAAAGCCTAAATTTAGTCAATTTTGACCCTTTTTAGGGTTTTTTAAGGT
CTATTTTCCAACCCCCGGTAATTATGCCCCCCGTTTATTTAATTTGAAAG
ACCCAGACGCCGACCCATTTACATGTGTGGAATTTGAATTCATGTATAAA
ACATGAAATTTGGTCAACTTGTACCAAAATTACGAGGTTTTTAAGTTTTG
CCTGGAAAGGCTTATGATGACGTCATCAAAAAACTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTACTGTTTAAAATTAAGTTTTAGACCC
TCTAAGGATCATCTGTGCCAAATTTCATGCTTTAATCACCATCTGAAGTA
TTTTTGTGCTAACAGACCTCACTAGTACCCACGAAAATATATATAAAAAG
GTAAATAATTATATAATTTTTAAAAATTGAAAAAAATATTTTTTCTTTAA
TATCAACCCTTCTCAGTCTAATGCAGGGTACCAATCCTACCTTTCTGACA
ACACTTCCCCCAATTCTGGTCAAATTGTCAAAATGAGCTAATAGAAATTC
AGCCACCAAAAATTTATTCATTTTTCAGATCAAGAAACATCAACAGAAGA
TTCAAATGGTGTTGGATGGCAAGAAAATCCAATACACAGTCGTTGATATT
TCTGCTTCAGAAGAAGGCAAAGCAAAAATGAGAGAGATTGCTGGTGACCC
AAAGGCTTTACCACCACAAGTTGCTAACGGTGACCAATACTGCGGGGTGA
GTCTTGATTTCATTTTTATCATTTTTACTCTTAAATTGTCTTTGATAATA
AAAAAGATTGATCTGGAAAAGATGCAAAAATCGACTTCGGGAAGATTGCC
CCTGGGTGCGGTCCATTTACATGGTCCATTTTCTCCTGTATTTTCCTATG
CGGAAAGAAATCTTGAATGATTATCTGTAACTTGTATGAAAAAGAAATTG
ATTTAACAAAACTCTCTGATTGAATGAAATAGTCTATATAATTATTACCT
CATTTTGAAACTTTTAAACTTACAACTTTACTTACTCACAGCCAATTAAT
TAACTCAATTTTGTTCTTTACAGTTTCTACTTAAGATATAAAACGTAATT
TACATATGATGGTATTTAGCAACTCTGCATTTTTTAAGGTAGATTTCAAT
ACCACATTCAATTTTATTTTTTCCCAACTTTTCTTCACAGGACTATGGTG
CATTTGATGCTGCAGTCGAAGAAGAAACATTGAACGAATTCCTGAAGTTA
TAAAATAATTATTCACTATTTTAAAAACATTAAAACATTCACACAGATCA
AATATCCCAACAAACACCAACGGTAAATGCATGATCGCTTAGTAAAAAGA
CAATACCTACGTAAACGCTATCTCAAAACTTCCATCTTGTCTCTTGTTTC
TTGTGATGAAGAGTTTACTCGAAAATATAATTTTATCACTATTTTATAGT
TTATTATATATGCCAAATATTATATTATTTGTTCCTATACTTTTTGTTCA
AGTTTTTATTTATTTTCCAGAATGAATTTTCTTAATTTTGTATTCTATTT
TCTTCTGTCAACTGTTCCTATTTCTAGTCTTTGTTACAACAAAATGAAAT
TTAACTGATGGTCCATCATTATTTGCAATTTATTTTTAAGTCTTGAAATA
CAAAATCAAATGTACATAAAATGTCAAATATTATAAACTATGAATTTCGA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030408XLOC_030408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047760-exon-scaffold_136-1575043694:99191..99496TCONS_00047760-exon-scaffold_136-1575043694:99191..99496Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1575043694:96001..96168TCONS_00047760-exon-scaffold_136-1575043694:96001..96168Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1575043694:95046..95556TCONS_00047760-exon-scaffold_136-1575043694:95046..95556Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1510915933:99191..99496TCONS_00047760-exon-scaffold_136-1510915933:99191..99496Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1510915933:96001..96168TCONS_00047760-exon-scaffold_136-1510915933:96001..96168Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1510915933:95046..95556TCONS_00047760-exon-scaffold_136-1510915933:95046..95556Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1491911889:99191..99496TCONS_00047760-exon-scaffold_136-1491911889:99191..99496Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1491911889:96001..96168TCONS_00047760-exon-scaffold_136-1491911889:96001..96168Clytia hemisphaericaexon
TCONS_00047760-exon-scaffold_136-1491911889:95046..95556TCONS_00047760-exon-scaffold_136-1491911889:95046..95556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_136supercontigscaffold_136:95046..99496 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
698.217	754.522	259.395	219.137	153.273	110.253	268.207	264.299	295.458	277.88	281.204	311.305	515.475	506.022	347.275	327.073	495.937	563.971	737.554	588.867	328.167	303.944	490.443	430.682	264.967	298.947	271.132	229.146	274.628	277.838
Blast
[Close]
BLAST of TCONS_00047760 vs. Swiss-Prot (Human)
Match: SH3L3 (SH3 domain-binding glutamic acid-rich-like protein 3 OS=Homo sapiens GN=SH3BGRL3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.027e-27
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:  277 YFSTVSSNMEIKKHQQKIQMVLDGKKIQYTVVDISASEEGKAKMREIAGDPKALPPQVANGDQYCGDYGAFDAAVEEETLNEFLKL 534
            Y ++V+ + EIK  Q ++  +LDGK+IQY +VDIS     + +MR +AG+PKA PPQ+ NGDQYCGDY  F  AVE+ TL EFLKL
Sbjct:    7 YSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIVNGDQYCGDYELFVEAVEQNTLQEFLKL 92
The following BLAST results are available for this feature:
BLAST of TCONS_00047760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SH3L31.027e-2754.65SH3 domain-binding glutamic acid-rich-like protein... [more]
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