TCONS_00046940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046940
Unique NameTCONS_00046940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046940 ID=TCONS_00046940|Name=TCONS_00046940|organism=Clytia hemisphaerica|type=transcript|length=2827bp
TGCATGTCAAACCTTTGATTTATGCATCGTCATTATAGTAATATATCAAC
AACGGTGGAGAACCTCTTAATGAACTTTCCAAGTGTAATTAAGTAAGGTC
ATTTGTGTACTTCCCCGGGGTGTTTTTACATATTGAATCTGTTTGATATA
AAAGGGGCTTTAATTTGCAAGTCAATACGAAATAGACTATCACTACACAA
GTAGCTTTGGTGCAGAGTGCGCAAGGCGTAATAGAAAATTTTCATAGCAA
AGATGTCTGGAAAACCACAATTGTTATATTTCGAACTCAGCGGTCGTGGC
GAAGTGATCAGGTTACTTTATAAACACGCTGGAGCAGATTTTGAAGATAA
ACGAATCTCTTTCCAAGACTACGGCCAAAACTACAAAACCAATGCCGAAG
AATGTCCGTTAGCCTTCTTACCCGTCCTAACCACATCATGCGGAAAGAAG
ATTTCTCAAACAACCGCTATCATCAGATACGTGGCAAATGAGTTGAAATT
ATTCGGTAAAAACAACGTTGAACAAGCATTGATTGATTTGACCATCGTTT
CAAATAAAGAATTATCTGACAAAGCTATTGATATTGTTTTCTCCCAAAAA
TCAGATGAAGAAAAGgcAAAACTCAAAGAATCATTGAAAACAGCAATCGA
TAAATATTtcacatattttgaaaaattggtcaaagaaAACGGTGGCCCAT
TTTTAGTTGGATCAGAGattaCAGTTGGCGACATCTACTTGACCGATTGC
TTAAACGGATTAACAGAAtataaaattttagatgttcaaCAACTCCTGGA
GAAATATCCATTACTCAAGGATATCTATGAAAAAGTTTTGCAATCtgata
atatcaaaagatatttaGAAAACcagaaaaaatagatttcactCAAATGT
TTATCATATTTTGCttagaaaatattatttaaaaattgacTATTTTAGGG
ATTTATGTTCTGTTATTTTAATACATGCACTGATTAAAAATTTAATCGCc
aatttttttgttataatttcATTGATTGATCATTATTACTAACGTAGATA
GATTGGTATGGTATGGTatgaataaaaattactttttaagtCTTCTCGTT
TGTAATATGGTTAGATAAAGTAGCGGAAACGAAGCGAATagttctaaaga
acgcgtcatttgtAATgtccaattattaaagtatcttataaaaactcatc
tgaaaaaaaagttgagctTTGTCGAGCTTTAAGCCAAAACCTTTCAATTT
ACATTACAAAATAAgtgtattttacaaaatttataaattccTATCGATGA
GCTGATTTCACCAGAATGTAACATAAAGTTGGtgaaaatttgttcgattt
tGATTGGACTGGTTCACAAAGTTTCTGATTCTTACATTGCACGGTGAAAC
ATTTCTTATCCAACATAAACGCTAAGTCGCATCCTTTCAACATACAACAT
AACCTGATGCATTGTTGTATACTATCCATATCGCCGCGGTCTGTAAACTT
ACCTGAGTGCAGGTTTCCACGTAAAGTGGCGTTCTGTAAGGGTTCGCTAT
ACGTGCAACTCGGGTCGTCACCTTCGATGTTTTTGTCCGCAGCGTGTACC
AAAGTAAAAAGCGACTTGACTACAGCTAAAGGTTCTTTCAATGAGTTTAA
ATAAGAAGTGGAGTCAGACTTCTTCGTATTTCTTGTTAAGGTATTGGTAA
CCACTTCTGAGTGCCTTTGCATTGATACATTATTATTAGGAATTTTTTGT
GTAGTCACAGCTAATTTCTTAGAATTTATCATGTTCCTTGCTTGTGATGG
TCTTTCAGTATTTTGGTCTTTATCTTCCaggtttttgtttaaaacaagcc
CGGTATTACCAGCTCTGTTTAAAGGCCTATTGCATAAATTTGATAaacaa
gttttttgaaattcctgcCTCTTACAATCACTGTTTTGACAttgaacttt
attttttgactCTTGGTTCGCTGGTCTAGTATTGTCACTATCATTTTCGA
ACTCAGTATTTATTGCGGCGTCATCTTGAGAAGTTGTTAcatcatcgatg
acgtcatcatttatttCTTGTTGGGTTGATGTCTGCATATGAGGGCTTCC
AATATTCGATTTCAACAATTTTAGAAGATATTGAACAGTTGTGCTATTGT
CTGTCTCTTGGTCAAACACTACATTCGGACTAAACTTTGATTTTGATGAT
AGTGATTCTTTCCAAGGATCTCTTTGAATAGTAACATTTGATTGATTGGT
TTGATGTACTTCTTGGTCACGATATTTATTATTTGATAATGATAAGCTGT
TGTTTGGTGTTTTGACGcgtgtattttgatttttgtttctaCTTTGATTA
GAAATTGTTTTGGTTTTTGACTTATTATCGCCTAATATTGCtatgttttt
cttatctttgAAAACATATGCAATTTTGGGTCTAAATCCATTCGATAGAG
ACATGTGCTTCttttcacaaagtttttcacttttacaAACGACCGTATAA
CAGATGTCTTTTAGCATCATCGCTAAGTCACATCCTTTACGTGTACAACA
TTTACGGATGCAGTCCTCCATGTTGGAGACGCGGCCGTGCGGTGTGAAGT
TACCAGCCTGGGAGCCACCCTTCAAGCTGACGTCATATGATATCACACCA
GGACGACAGACTCCCTCTTTTGTCTTTTGGTTCGGCAAAGGagctaaaag
aattgaaaaaagtttcgataagatacacgttttttttataagaaaaaact
atataacaacataaggcttcgatggccaaaatgttaagaaaaagttaaga
acatttcaaagacTCTAAACCAACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_118:386281..391046-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046940 ID=TCONS_00046940|Name=TCONS_00046940|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_118:386281..391046- (Clytia hemisphaerica)
TGCATGTCAAACCTTTGATTTATGCATCGTCATTATAGTAATATATCAAC
AACGGTGGAGAACCTCTTAATGAACTTTCCAAGTGTAATTAAGTAAGGTC
ATTTGTGTACTTCCCCGGGGTGTTTTTACATATTGAATCTGTTTGATATA
AAAGGGGCTTTAATTTGCAAGTCAATACGAAATAGACTATCACTACACAA
GTAGCTTTGGTGCAGAGTGCGCAAGGCGTAATAGAAAATTTTCATAGCAA
AGTGAGTAGATTTTTCTCCTGCAAATGTTTTGTTTCCAAGATTCATATTC
ACTTTAGTGTCTGCAAAATACAGGCAATGTTTTAAATACATGCTGCTAAG
AAACTTGACAGACTTTATTTTTACAATCAAAGGTTTTTTTTAGAGGGACG
TTTTTATGGGACATACTGTAGACATATCATTACATAACTTCAAGGTCTCA
ATAAATTGAGTTCTGCTCACACAGCGTTGTTTCAGTGTTTATCTAAGGCT
ACGTTGTTTTTAGGCCCCTGCTTTGCCGTTTTTTTCAGCTAATTTAATTA
TAGTGCTTTTATCTTTGCTAAATATAACGATTTGTTTACTTTAGATGTAA
CTCTCTCTGAATTTTACTATACTACGTATTCCTTCTTAGGATGTCTGGAA
AACCACAATTGTTATATTTCGAACTCAGCGGTCGTGGCGAAGTGATCAGG
TTACTTTATAAACACGCTGGAGCAGATTTTGAAGATAAACGAATCTCTTT
CCAAGACTACGGCCAAAACTACAAAACCAATGGTAAGATTTCTGCCAAGG
AAATACCCAAATAGGGCCTGCATGTCTCAGTCAGGATCCATACTTGAAGT
ATGTGGGGAGGAGAGAAAAGGTGCTAGGGCTGGAAAATCTCTCGTTTTTT
GAATCACTGCTTGGCGAGAACATAGAGTGATAAGAAATATCGGCTTAGCC
TCGAAATTCTTTGCTTTTATCCAAGTGGATAAGAGGCTAGTTTTCAAGCT
TGGATAAAATCTCAAGGCTTTGCTTTTGTGTGGACGAATGTTTGGAAGGT
GAAAAAGTATTAAAGAGTCTTTAACACGGGATGAACGTTTATGATAAACC
TTAAATATCTATCCAGATACTCCCGTCACTGTTTAAAATTTTCTTTACAC
GTCTTTTTTTATAAAAATGGTGTAAATCCATTTCATCGTAGATATTCTTA
ACTTTTCGGTCGAAATCATCCTGAAATATTGTTACAGTATTCTTAGATTT
AGATGAAAGCCTAAATCTAGTATGCAATATATACCTCTAGCAAGAATTTC
GGATTTTTGTGATGAAACTATTCTTAGCTTCAGTTGCTAAATTCCATGAT
GGCAATATTCTTACGAGATTCCTAACTTTTTGGCTATTTTCATCATGGAC
ATTCTTATAAAGTGTATTCTTATAAAAAAGCGTGTATCGCTATTTATGCC
ACCATATCTTCGTCTTTTTCCAGCCGAAGAATGTCCGTTAGCCTTCTTAC
CCGTCCTAACCACATCATGCGGAAAGAAGATTTCTCAAACAACCGCTATC
ATCAGATACGTGGCAAATGAGTTGAAATTATTCGGTAAAAACAACGTTGA
ACAAGCATTGATTGATTTGACCATCGTTTCAAATAAAGAATTATCTGACA
AAGCTATTGATATTGTTTTCTCCCAAAAATCAGATGAAGAAAAGGTAACA
GACGCGTAGTCATAATTATATTTACTTGCTTTCAAAAGAGGATAACCACT
TTGCATATGAGCTCTTTGTTGAAGATCTGTAAATGTTTGAAATCTCTATG
TCACGGACCGGGTTAGACGAAAATCGACAATGTTTCAGTTATGTAAAAAG
TATAGAAAAACGTCAAAAAAAAACAAAGGAATCGAAGTTTTTTATGCCTT
TAAGCACGATTAGAACAGAGGTAAGTTGGTATCTTCTGAACGAGTTCTTG
TCCATAATATTATTGAATCTTTTTTTGAGCAAGTACTTTATCATATAATT
TAAGCCAAACATTTGAAATAACCAAATCATGTTCATTCTTAATTTTTAGG
CAAAACTCAAAGAATCATTGAAAACAGCAATCGATAAATATTTCACATAT
TTTGAAAAATTGGTCAAAGAAAACGGTGGCCCATTTTTAGTTGGATCAGA
GGTAAGAAATACACTTCATTTCTTACAAACCTCGAAGAACAACTTTCTCC
GTGTCCAGTTGAAATTATATCCTAGAATAATAATATCCTAATTGTGAAAA
TGTTGATTATTTTTGCTCTAAAAGAGATTAAAATTTGAAAAAATGCACTG
TAAGGGTATGAATTTCACCGATTTTTTCTGCACTGTAAAGGTGCGATTCT
AAAAGCCAGTCAGTTGGTAAACCCACTGCCACCCCCCCCGGGGACCTCCT
AGAATTTCGGCGCAGATGGAAAAATTAACCTACAATTCCAGCCCACTGAT
CTGATAAATTCATTTCATTCCCGTTTGAAATTTAAAGTAAAAAGTTTGCA
CTCTAAAACTATCCCATTAGATATTTTCAGCTTGACAGAATAGACTTTCT
ATCCTCATTAGGATTATGAAAAATATTTCTTGAGTAACTTTTCTGTTGAA
ATGATAATTAAGATATAATAATATTAAGAATTTTTGCACCTTTTTTTTCA
TTTTAGATTACAGTTGGCGACATCTACTTGACCGATTGCTTAAACGGATT
AACAGAATATAAAATTTTAGATGTTCAACAACTCCTGGAGAAATATCCAT
TACTCAAGGATATCTATGAAAAAGTTTTGCAATCTGATAATATCAAAAGA
TATTTAGAAAACCAGAAAAAATAGATTTCACTCAAATGTTTATCATATTT
TGCTTAGAAAATATTATTTAAAAATTGACTATTTTAGGGATTTATGTTCT
GTTATTTTAATACATGCACTGATTAAAAATTTAATCGCCAATTTTTTTGT
TATAATTTCATTGATTGATCATTATTACTAACGTAGATAGATTGGTATGG
TATGGTATGAATAAAAATTACTTTTTAAGTCTTCTCGTTTGTAATATGGT
TAGATAAAGTAGCGGAAACGAAGCGAATAGTTCTAAAGAACGCGTCATTT
GTAATGTCCAATTATTAAAGTATCTTATAAAAACTCATCTGAAAAAAAAG
TTGAGCTTTGTCGAGCTTTAAGCCAAAACCTTTCAATTTACATTACAAAA
TAAGTGTATTTTACAAAATTTATAAATTCCTATCGATGAGCTGATTTCAC
CAGAATGTAACATAAAGTTGGTGAAAATTTGTTCGATTTTGATTGGACTG
GTTCACAAAGTTTCTGATTCTTACATTGCACGGTGAAACATTTCTTATCC
AACATAAACGCTAAGTCGCATCCTTTCAACATACAACATAACCTGATGCA
TTGTTGTATACTATCCATATCGCCGCGGTCTGTAAACTTACCTGAGTGCA
GGTTTCCACGTAAAGTGGCGTTCTGTAAGGGTTCGCTATACGTGCAACTC
GGGTCGTCACCTTCGATGTTTTTGTCCGCAGCGTGTACCAAAGTAAAAAG
CGACTTGACTACAGCTAAAGGTTCTTTCAATGAGTTTAAATAAGAAGTGG
AGTCAGACTTCTTCGTATTTCTTGTTAAGGTATTGGTAACCACTTCTGAG
TGCCTTTGCATTGATACATTATTATTAGGAATTTTTTGTGTAGTCACAGC
TAATTTCTTAGAATTTATCATGTTCCTTGCTTGTGATGGTCTTTCAGTAT
TTTGGTCTTTATCTTCCAGGTTTTTGTTTAAAACAAGCCCGGTATTACCA
GCTCTGTTTAAAGGCCTATTGCATAAATTTGATAAACAAGTTTTTTGAAA
TTCCTGCCTCTTACAATCACTGTTTTGACATTGAACTTTATTTTTTGACT
CTTGGTTCGCTGGTCTAGTATTGTCACTATCATTTTCGAACTCAGTATTT
ATTGCGGCGTCATCTTGAGAAGTTGTTACATCATCGATGACGTCATCATT
TATTTCTTGTTGGGTTGATGTCTGCATATGAGGGCTTCCAATATTCGATT
TCAACAATTTTAGAAGATATTGAACAGTTGTGCTATTGTCTGTCTCTTGG
TCAAACACTACATTCGGACTAAACTTTGATTTTGATGATAGTGATTCTTT
CCAAGGATCTCTTTGAATAGTAACATTTGATTGATTGGTTTGATGTACTT
CTTGGTCACGATATTTATTATTTGATAATGATAAGCTGTTGTTTGGTGTT
TTGACGCGTGTATTTTGATTTTTGTTTCTACTTTGATTAGAAATTGTTTT
GGTTTTTGACTTATTATCGCCTAATATTGCTATGTTTTTCTTATCTTTGA
AAACATATGCAATTTTGGGTCTAAATCCATTCGATAGAGACATGTGCTTC
TTTTCACAAAGTTTTTCACTTTTACAAACGACCGTATAACAGATGTCTTT
TAGCATCATCGCTAAGTCACATCCTTTACGTGTACAACATTTACGGATGC
AGTCCTCCATGTTGGAGACGCGGCCGTGCGGTGTGAAGTTACCAGCCTGG
GAGCCACCCTTCAAGCTGACGTCATATGATATCACACCAGGACGACAGAC
TCCCTCTTTTGTCTTTTGGTTCGGCAAAGGAGCTAAAAGAATTGAAAAAA
GTTTCGATAAGATACACGTTTTTTTTATAAGAAAAAACTATATAACAACA
TAAGGCTTCGATGGCCAAAATGTTAAGAAAAAGTTAAGAACATTTCAAAG
ACTCTAAACCAACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029944XLOC_029944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046940-exon-scaffold_118-1575043694:390796..391046TCONS_00046940-exon-scaffold_118-1575043694:390796..391046Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1575043694:390265..390407TCONS_00046940-exon-scaffold_118-1575043694:390265..390407Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1575043694:389353..389573TCONS_00046940-exon-scaffold_118-1575043694:389353..389573Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1575043694:388896..388997TCONS_00046940-exon-scaffold_118-1575043694:388896..388997Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1575043694:386281..388390TCONS_00046940-exon-scaffold_118-1575043694:386281..388390Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1510915933:390796..391046TCONS_00046940-exon-scaffold_118-1510915933:390796..391046Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1510915933:390265..390407TCONS_00046940-exon-scaffold_118-1510915933:390265..390407Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1510915933:389353..389573TCONS_00046940-exon-scaffold_118-1510915933:389353..389573Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1510915933:388896..388997TCONS_00046940-exon-scaffold_118-1510915933:388896..388997Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1510915933:386281..388390TCONS_00046940-exon-scaffold_118-1510915933:386281..388390Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1491911889:390796..391046TCONS_00046940-exon-scaffold_118-1491911889:390796..391046Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1491911889:390265..390407TCONS_00046940-exon-scaffold_118-1491911889:390265..390407Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1491911889:389353..389573TCONS_00046940-exon-scaffold_118-1491911889:389353..389573Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1491911889:388896..388997TCONS_00046940-exon-scaffold_118-1491911889:388896..388997Clytia hemisphaericaexon
TCONS_00046940-exon-scaffold_118-1491911889:386281..388390TCONS_00046940-exon-scaffold_118-1491911889:386281..388390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:386281..391046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
148.416	144.94	99.0127	84.4991	0.224567	0.50431	0.863978	1.10583	1.69016	1.19088	0.969928	1.08072	20.7799	17.3506	19.3619	21.2507	14.2113	10.8055	9.00332	18.6311	5.85565	5.55161	65.6572	50.6026	3.77383	5.74196	2.59974	4.30284	17.3273	22.2665
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011106MANSC_N
IPR013980MANSC_dom
Blast
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BLAST of TCONS_00046940 vs. Swiss-Prot (Human)
Match: GSTA2 (Glutathione S-transferase A2 OS=Homo sapiens GN=GSTA2 PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 6.800e-22
Identity = 69/207 (33.33%), Postives = 115/207 (55.56%), Query Frame = 1 
Query:  253 MSGKPQLLYFELSGRGEVIRLLYKHAGADFEDKRISFQDYGQNYKTNAEECPLAFLPVLTTSC-GKKISQTTAIIRYVANELKLFGKNNVEQALIDLTIVSNKELSDKAIDIVFSQKSDEEKAKLKESLKTAIDKYFTYFEKLVKENGGPFLVGSEITVGDIYLTDCLNGLTEYKILDVQQLLEKYPLLKDIYEKVLQSDNIKRYLE 870
            M+ KP+L Y  + GR E IR L   AG +FE+K   F    ++      +  L F  V      G K+ QT AI+ Y+A++  L+GK+  E+ALID+ I    +L +  + + FSQ  +E+ AKL    +   ++YF  FEK++K +G  +LVG++++  DI+L + L  + E   LD   L+  +PLLK +  ++     +K++L+
Sbjct:    1 MAEKPKLHYSNIRGRMESIRWLLAAAGVEFEEK---FIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGEMILLLPFSQ-PEEQDAKLALIQEKTKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEE---LD-SSLISSFPLLKALKTRISNLPTVKKFLQ 199
The following BLAST results are available for this feature:
BLAST of TCONS_00046940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTA26.800e-2233.33Glutathione S-transferase A2 OS=Homo sapiens GN=GS... [more]
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