TCONS_00004662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004662
Unique NameTCONS_00004662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004662 ID=TCONS_00004662|Name=TCONS_00004662|organism=Clytia hemisphaerica|type=transcript|length=1417bp
AGCAAACCCTGTAAACCATACCATTTGAGATAGTACGTTTCAAGGTCCAT
CTTTTGAGTCTGGTTTGAAATTACAAATCTTATCGGGCAGCTAATGACGT
CACTAAGAAATGTGACAGACTTTAAGCCATTTCGGACCAAAACTTCAACT
GACGAAATTTTAAAGACGACTACATTTTCGTCATCTACTTTTCATAATCT
TTTAGATAAAAGTGCGGAAATTTATTTTTGGGAAGTTTTAGAATTTGCTA
TTGGGAGTTTGTACTAGAAATTGGCATCATCATATAATTCTCTGAAAAGT
GTGAGaaacttttctattcaattaATTATAAAATATTCAGGGTAATTCCG
GTGGTTTTAGGGACCCCATCATAAGGAACGTCTGTGCCAAATCTTAGCca
cctttttatttttctcaaattaaaaaaataattctgtCGGACTATTATCA
GTTTGTGTCCATGATTTAGATGCTGTAATTAACGAggaatttttatgttt
tatgaTCGAATACTGTTTGAATGCAATGAATTTGTTCAATATTTGATTTA
AGACTTGAGTAGAATCAATAATACCTTACCATCTTGATTATGTATAAAAA
GGGACCAAATGATTGGTTTGGATTAGCTTTGGTCCTGatctctttttcaa
atttttacacaTCAGCTTATCTTTGGAGAAATGCTAACGTTAAGGCAGAT
ACTTGACAAAATTTAAGTTTGAGTGACCACCCATTTCAGTCATTTGGAAG
TGTTCCAGAGAAAACCTATTAGTTGGCCCTAACAGGGAAAAGAACTTTGC
CACACTGTGAAACCGATATTGTAACATCTTAAGAAATCAGGCCTATATCT
AAATTTTATGGAGTTCATTGTTGGGCCTCTAATACATATGGTATTTCTGG
AACACTGTTTTCCTGGCCTCTTGCAACGTTTTTgggttataaaaaaatat
atgcaAAGAAAGCTAAAATTCCCTACCCCTTAATCCCTACCAGATTTGTT
TATATTCAATATAGTGAATCTTAAACTTTTTAGAAAACTTTGATTTGTCA
TTGCTAACCACTTCAACAACAAAACTTCTGATTGAGaggatatttttgaa
atattattttaccTAGGCGAAGCCCcttctttaatttctttctttgacac
atttttcactcgttttttttaggtttgaGCTAGGATCATTGCACAATCCG
AAGGTTAAAAGTTGGTGTTTACAATGGGTCTccatggatggatggatgga
tgggtCCGTTTGAATTGAAAAGGTGCTACATTTGTTTTTGAGATCATCCA
ACCAGAACGCTGATGGTCAAAACGATTGAATTTTGTTTACATGGATAATC
AGATCATTCTTCCGTCACCTCCCTTTTCCTTTCAAGGTTTGTTTGTGTTG
TATGGATTTACTATCCG
Run BLAST on NCBI

transcript from alignment at sc0000047:110075..111924-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004662 ID=TCONS_00004662|Name=TCONS_00004662|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000047:110075..111924- (Clytia hemisphaerica)
AGCAAACCCTGTAAACCATACCATTTGAGATAGTACGTTTCAAGGTCCAT
CTTTTGAGTCTGGTTTGAAATTACAAATCTTATCGGGCAGCTAATGACGT
CACTAAGAAATGTGACAGACTTTAAGCCATTTCGGACCAAAACTTCAACT
GACGAAATTTTAAAGACGACTACATTTTCGTCATCTACTTTTCATAATCT
TTTAGATAAAAGTGCGGAAATTTATTTTTGGGAAGTTTTAGAATTTGCTA
TTGGGAGTTTGTACTAGAAATTGGCATCATCATATAATTCTCTGAAAAGT
GTGAGAAACTTTTCTATTCAATTAATTATAAAATATTCAGGGTAATTCCG
GTGGTTTTAGGGACCCCATCATAAGGAACGTCTGTGCCAAATCTTAGCCA
CCTTTTTATTTTTCTCAAATTAAAAAAATAATTCTGTCGGACTATTATCA
GTTTGTGTCCATGATTTAGATGCTGTAATTAACGAGGAATTTTTATGTTT
TATGATCGAATACTGTTTGAATGCAATGAATTTGTTCAATATTTGATTTA
AGACTTGAGTAGAATCAATAATACCTTACCATCTTGATTATGTATAAAAA
GGGACCAAATGATTGGTTTGGATTAGCTTTGGTCCTGATCTCTTTTTCAA
ATTTTTACACATCAGCTTATCTTTGGAGAAATGCTAACGTTAAGGCAGAT
ACTTGACAAAATTTAAGTTTGAGTGACCACCCATTTCAGTCATTTGGAAG
TGTTCCAGAGAAAACCTATTAGTTGGCCCTAACAGGGAAAAGAACTTTGC
CACACTGTGAAACCGATATTGTAACATCTTAAGAAATCAGGCCTATATCT
AAATTTTATGGAGTTCATTGTTGGGCCTCTAATACATATGGTATTTCTGG
AACACTGTTTTCCTGGCCTCTTGCAACGTTTTTGGGTTATAAAAAAATAT
ATGCAAAGAAAGCTAAAATTCCCTACCCCTTAATCCCTACCAGATTTGTT
TATATTCAATATAGTGAATCTTAAACTTTTTAGAAAACTTTGATTTGTCA
TTGCTAACCACTTCAACAACAAAACTTCTGATTGAGAGGATATTTTTGAA
ATATTATTTTACCTAGGCGAAGCCCCTTCTTTAATTTCTTTCTTTGACAC
ATTTTTCACTCGTTTTTTTTAGGTTTGAGCTAGGATCATTGCACAATCCG
AAGGTTAAAAGGTGAGCTAAACTTGATATTAAGGAAAAGTTTCCTTTTCC
CAGTTAACATGAAAAATCAAATTTCAAATCGCAACATTTGTCATGACGAT
GATTGAACAACTTTTCCCGAAAACGATTTCAATTAAAGTGAGATTAAACT
TTATGATAACGGAGTCATGAACAATTCAATAAAACATTTTACTATGTGAT
GGCTCAACTTTCAATAGATTTGAGAGAATCTGAATTTTGACTTCCTTTTT
AGTTGGTGTTTACAATGGGTCTCCATGGATGGATGGATGGATGGGTCCGT
TTGAATTGAAAAGGTGCTACATTTGTTTTTGAGGTAATACATTTATGGTT
AACTGGTTAACTTATTAGACAAAGGCCCTTCTCTTCTAGCCTTGAACGAT
TATCTAGTTGAATCGAGTGAAGCTCTTCCTCTTGTCACAACCTTCACCTT
CACAACCAATTTCTCACTTGTTTCTAAACTTTAAGCATAAATATTAGAAT
TTATTCTGTATGTATTCATGTTTAGATCATCCAACCAGAACGCTGATGGT
CAAAACGATTGAATTTTGTTTACATGGATAATCAGATCATTCTTCCGTCA
CCTCCCTTTTCCTTTCAAGGTTTGTTTGTGTTGTATGGATTTACTATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002630XLOC_002630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004662-exon-sc0000047-1575043694:110714..111924TCONS_00004662-exon-sc0000047-1575043694:110714..111924Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1575043694:110392..110472TCONS_00004662-exon-sc0000047-1575043694:110392..110472Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1575043694:110075..110199TCONS_00004662-exon-sc0000047-1575043694:110075..110199Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1510915933:110714..111924TCONS_00004662-exon-sc0000047-1510915933:110714..111924Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1510915933:110392..110472TCONS_00004662-exon-sc0000047-1510915933:110392..110472Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1510915933:110075..110199TCONS_00004662-exon-sc0000047-1510915933:110075..110199Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1491911889:110714..111924TCONS_00004662-exon-sc0000047-1491911889:110714..111924Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1491911889:110392..110472TCONS_00004662-exon-sc0000047-1491911889:110392..110472Clytia hemisphaericaexon
TCONS_00004662-exon-sc0000047-1491911889:110075..110199TCONS_00004662-exon-sc0000047-1491911889:110075..110199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:110075..111924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784256	0.890174	0.465928	0.409438	8.36714	5.56376	7.49034	6.64024	6.18052	5.37702	7.25609	7.48912	7.35986	7.64782	5.05251	3.52661	5.27651	5.43429	4.93464	5.84089	6.73702	10.7643	2.94542	3.56468	6.27477	6.78431	7.92057	8.84806	7.12114	6.55455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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