TCONS_00046775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046775
Unique NameTCONS_00046775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046775 ID=TCONS_00046775|Name=TCONS_00046775|organism=Clytia hemisphaerica|type=transcript|length=4027bp
acAACATATCCTCGGAAACGATTTCAATATACTACATTGAAAGCTAATAA
CATGTGATATCAATGTATACCATTGAAATCGTTCAAGGTTTAGTTTCAAT
GGGATTTCAATGTATTGCATTGAAATTTGAGTTTTAATGTTGTACATTGA
AACTTCAGGCTTCAGTTTGAAGAAGATAGCTTGTATCCGTGCACCGTTTT
AGCCTGCGGAAGCAACCCAACAAGCCAAGCGATCCCAACAAGGTGGGAAT
GATGACAGTTTACAGATTTACGAGTTCAGATGTTGAGATACATTGCATTT
GGGCACAGAATGATGACTTTCAATTATCAATGTTTGATTCAAAAATGGAT
TTGGTTTTTCTATTTATGGATACACACCTTACCTACCTTGGTGGAATGAG
AAGACTTTTTTAAATGTATTCGGTTTATGAGGATTCAAAATTAATTAGTG
TGTGTTGTCAAACAACTGGTTTACCCCTTATTCGACAACCATTAAGCATT
AATAAAAGTAGTCAACAATCTTTTTTTGTCAAACAACTGTGTCACACAGT
CTGTGCGAACTGGACCTGCTGTACAACAACAAACGAGTGTTTGTTAAACA
AGTGACACTTTCTTTCAAATAAGTGGATATTTGATCAGCTGGGCTGTCAA
TCACCAATGATCATCCCACCCTCTTGTTTGACAGGTCATTTGACTGGCAT
AAGTGTCAATCATTAAATTACAAATGTATTGTCGTACAAGTGACTTGATT
GTCCAAACATGGGATCACATACCCGCCCCATTACCACCTAAACAAACCCC
CATCAAATTTTATAGATGGATTTTTGGATTCCTGGCTTGTCGGATTCCTG
GCTTGTCAGATTCCTGGCTTGTCAAttgaatttacttttttttccggTTC
ACTCATAATAATAATTAATAATGTTGTGTATTACCGTGAGTGCATGGACT
TATTATAGAGACTCGggggataaacatcgaatgaaacggtggagagcgaa
gtattgtctttctttctttgtccgcaaaggacaactgtcatggcagctcg
aaggactctgattttgaaaaatgatttaatactcttatttctaaaaagtt
ctctaactttttcaGATCATACATTTTGCTGGCTAAAAGTTTggaaataa
atgctagaataccacgcaaatacatttttatgaaatctggtgtgagaaaa
acatcatcagagtAGAGtcagacgagtaaaatcaaacaaaatcctCATAA
TggcacaaaattttgaattgggaatatctttccaatatttctctGAGAAG
AGCTAAGATTAACATATATTAGATGTGAGTCTCATAGCTTCACTGTGGta
tttctggtgtcaatattcaatttcttatacatagcatgtttttgcatctt
tgcatctttctcgaaaTTCGAAACATCATAACGACGttagtaattaacta
gatgagtttgaatctcggaggagaTTGGGAATaggataagtgtattttga
tgagaaatgcagttaaaatgctacgaaaaatattttaatattggaaggag
ggtgaacaataatgtcattactgtggacaaggcttgtacatgagaaattg
gcaaaaatcagcccgttgtttttccagtgtctataatatatataatatat
ataataattcctaaatccgacagcccagGCCTAattccgatggggtcttt
caaaggtacaaactaaaataaaaccaaacctttcgctgtgtgacgcaaca
aagataccaaagtgtcaactgactgagagatttgatacattgaacccgtt
aaatcaaataacatttgttaacgttttaaacacaaacaacagattcagaa
taaaaGGTATATAATATCTGTAGTTATTTAAAATTACtataataattttt
aaaactcaCACTTTgttatcacattaattgacattgTGACATTTTAAAGC
CATTGTtggatgttttgtttcaagagttcttgcaatagtttatcgttcaa
cttggagaggtaatgtttgtaaacatagaattttttttttaataacagtt
atttggggggtcggaattaggctgggctgtcggatttaggacaaCTCACG
GCATATACCTAATGGTATTTTAGTGGCCCTTTCGTGGAAACAATTCCTCA
AAAATTCCATGATAGCATTAAAAACTGGGGTTGGTTTCATCAGATCAAGG
GGGTTATTTTCATCAGAGCAAGGGGGTTACTTTCATCACTACCATGCCAG
GTGCGATAAGGTGCTAATGTCGGGTgctaaaatttaaagttttaccaCCA
AACAGAATAGTGCAGTCCGGTCCTCAGCCTTAACGCCTAAAAACACCTGA
CAGGTGACGTTGTTGGGTGCTGTCTGTTGggtattttggaaaaattagaa
aattttgcacCTGACAACAGAGGTTCCATCACCTGGCTGTCAGGTCTATC
ATCCAACTGTTGGATGTGTCGACAGGGTTGTTTTTCATCACTTCCATAAA
CATGCATTTGTAAACTATAATTATTGTAAACTAAGTTAAAATGAAAACCA
GAAAAGTCTGTCATGTGAAGGTGATGAAAGTTACACCTTGCTGATGGAAG
TAACCCCAGTTGACAGTAAATTTTTACCTCCgaatattaaaaaagaaaag
tttgaagtctattaaaaaacattgtttgtttcattttgtttcACAAAGGA
ATGACATAATTTTCCACATAATAAAATGAATGTACTGTTAATATTACAGC
CAACAAAAATGCATGCAATCATCTTCAAAGATTAAAATTTTGTGATCCAA
TGCAAATAGCAACTTTTGGTACTTAGTAGGTATATATAACCCTAGGAATT
CAAAATGGAGGTTTAAGGCACTTAAGAAACTTATTTTGCtaggtttgaaa
ttttgtttttaaatgaaatgttGTGATTGAGACTGTTAAGCAAATCAGTT
AAAAGTTGAGTGACagcaaaccaacatttttttgCACATCCTGGCAAGTC
TTGGCATTACTACAGCTAGCTTTGAGATAAAGTGTTTAAGAGTTCCAGGT
TAATATTTATATTGGAGGTCAATACGCCAAAATTTTACCCCCCCCTGACC
AAACCCCTGATGCATTTACTTCGCTTTTACAATTCATAGCTGCCAACCTG
CATTGAACTAGGGACACCTGCAAAGTATGAAATATAAGATTCCTCCCAAA
TCTCCTGCATTTTTAATATATTTCCAGATTTTTCTTCCTTGCTGATTTTc
ctgaaaatacacttttttacaagcttttctaAAGACAGGTTTAAAAACTT
GAGAtctataatatattttttgctctttttaaACTTCAGATTTCAAATCA
TAAACatttaatcaaaacaaagactGTCACATGACCAATGCAATTCACAA
TTGTGTTTATTTTAATAGAGTGTGGAATGCTGAATGACATACCATATATC
AACATAATACAGAAATTTCAATACCAGTCTTGAGAGCGTTTTCTGTTTCA
TGAGCACATCGATTTTCAAATGGTTATGAactcaaaaatatattattgTC
ATTGGAATATTTTTTCCTGTCACACGTATTGAAAGAAACTGTTCAACAGC
TTATTAATGGTACCATGAGATATACTTTTCTCTTGTTTTGGATATGACTG
TCATAATATGTCAAAATATTTGGTCATTGTCAATGGATTTCACCAGCCTG
TATCGTAAGAAACTGTATATATAATGTTTGGTACGTCATGGTATTCTTAT
CATGGTGGTTATTGTTTACGTGGCATGGGAGTAATTATACGCATTTTTTG
TACAgtattttttttaaggaaaagctaTCTGATTTATACCTAACCTgcat
aaaataattaaaaagttaaaatggtaattcaatttatttttatttcattg
ggTGAATGTTTTCCTAAAACTGAATATTTTTTGTCTTgttataaaatttt
aattgtatCAAAGTATTTATTTCCTCCTGCTGTATAAACAACAGTTTTTT
AGACATTACTTTCATacctttttcata
Run BLAST on NCBI

transcript from alignment at scaffold_117:402469..406495+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046775 ID=TCONS_00046775|Name=TCONS_00046775|organism=Clytia hemisphaerica|type=transcript|length=4027bp|location=Sequence derived from alignment at scaffold_117:402469..406495+ (Clytia hemisphaerica)
acAACATATCCTCGGAAACGATTTCAATATACTACATTGAAAGCTAATAA
CATGTGATATCAATGTATACCATTGAAATCGTTCAAGGTTTAGTTTCAAT
GGGATTTCAATGTATTGCATTGAAATTTGAGTTTTAATGTTGTACATTGA
AACTTCAGGCTTCAGTTTGAAGAAGATAGCTTGTATCCGTGCACCGTTTT
AGCCTGCGGAAGCAACCCAACAAGCCAAGCGATCCCAACAAGGTGGGAAT
GATGACAGTTTACAGATTTACGAGTTCAGATGTTGAGATACATTGCATTT
GGGCACAGAATGATGACTTTCAATTATCAATGTTTGATTCAAAAATGGAT
TTGGTTTTTCTATTTATGGATACACACCTTACCTACCTTGGTGGAATGAG
AAGACTTTTTTAAATGTATTCGGTTTATGAGGATTCAAAATTAATTAGTG
TGTGTTGTCAAACAACTGGTTTACCCCTTATTCGACAACCATTAAGCATT
AATAAAAGTAGTCAACAATCTTTTTTTGTCAAACAACTGTGTCACACAGT
CTGTGCGAACTGGACCTGCTGTACAACAACAAACGAGTGTTTGTTAAACA
AGTGACACTTTCTTTCAAATAAGTGGATATTTGATCAGCTGGGCTGTCAA
TCACCAATGATCATCCCACCCTCTTGTTTGACAGGTCATTTGACTGGCAT
AAGTGTCAATCATTAAATTACAAATGTATTGTCGTACAAGTGACTTGATT
GTCCAAACATGGGATCACATACCCGCCCCATTACCACCTAAACAAACCCC
CATCAAATTTTATAGATGGATTTTTGGATTCCTGGCTTGTCGGATTCCTG
GCTTGTCAGATTCCTGGCTTGTCAAttgaatttacttttttttccggTTC
ACTCATAATAATAATTAATAATGTTGTGTATTACCGTGAGTGCATGGACT
TATTATAGAGACTCGggggataaacatcgaatgaaacggtggagagcgaa
gtattgtctttctttctttgtccgcaaaggacaactgtcatggcagctcg
aaggactctgattttgaaaaatgatttaatactcttatttctaaaaagtt
ctctaactttttcaGATCATACATTTTGCTGGCTAAAAGTTTggaaataa
atgctagaataccacgcaaatacatttttatgaaatctggtgtgagaaaa
acatcatcagagtAGAGtcagacgagtaaaatcaaacaaaatcctCATAA
TggcacaaaattttgaattgggaatatctttccaatatttctctGAGAAG
AGCTAAGATTAACATATATTAGATGTGAGTCTCATAGCTTCACTGTGGta
tttctggtgtcaatattcaatttcttatacatagcatgtttttgcatctt
tgcatctttctcgaaaTTCGAAACATCATAACGACGttagtaattaacta
gatgagtttgaatctcggaggagaTTGGGAATaggataagtgtattttga
tgagaaatgcagttaaaatgctacgaaaaatattttaatattggaaggag
ggtgaacaataatgtcattactgtggacaaggcttgtacatgagaaattg
gcaaaaatcagcccgttgtttttccagtgtctataatatatataatatat
ataataattcctaaatccgacagcccagGCCTAattccgatggggtcttt
caaaggtacaaactaaaataaaaccaaacctttcgctgtgtgacgcaaca
aagataccaaagtgtcaactgactgagagatttgatacattgaacccgtt
aaatcaaataacatttgttaacgttttaaacacaaacaacagattcagaa
taaaaGGTATATAATATCTGTAGTTATTTAAAATTACtataataattttt
aaaactcaCACTTTgttatcacattaattgacattgTGACATTTTAAAGC
CATTGTtggatgttttgtttcaagagttcttgcaatagtttatcgttcaa
cttggagaggtaatgtttgtaaacatagaattttttttttaataacagtt
atttggggggtcggaattaggctgggctgtcggatttaggacaaCTCACG
GCATATACCTAATGGTATTTTAGTGGCCCTTTCGTGGAAACAATTCCTCA
AAAATTCCATGATAGCATTAAAAACTGGGGTTGGTTTCATCAGATCAAGG
GGGTTATTTTCATCAGAGCAAGGGGGTTACTTTCATCACTACCATGCCAG
GTGCGATAAGGTGCTAATGTCGGGTgctaaaatttaaagttttaccaCCA
AACAGAATAGTGCAGTCCGGTCCTCAGCCTTAACGCCTAAAAACACCTGA
CAGGTGACGTTGTTGGGTGCTGTCTGTTGggtattttggaaaaattagaa
aattttgcacCTGACAACAGAGGTTCCATCACCTGGCTGTCAGGTCTATC
ATCCAACTGTTGGATGTGTCGACAGGGTTGTTTTTCATCACTTCCATAAA
CATGCATTTGTAAACTATAATTATTGTAAACTAAGTTAAAATGAAAACCA
GAAAAGTCTGTCATGTGAAGGTGATGAAAGTTACACCTTGCTGATGGAAG
TAACCCCAGTTGACAGTAAATTTTTACCTCCgaatattaaaaaagaaaag
tttgaagtctattaaaaaacattgtttgtttcattttgtttcACAAAGGA
ATGACATAATTTTCCACATAATAAAATGAATGTACTGTTAATATTACAGC
CAACAAAAATGCATGCAATCATCTTCAAAGATTAAAATTTTGTGATCCAA
TGCAAATAGCAACTTTTGGTACTTAGTAGGTATATATAACCCTAGGAATT
CAAAATGGAGGTTTAAGGCACTTAAGAAACTTATTTTGCtaggtttgaaa
ttttgtttttaaatgaaatgttGTGATTGAGACTGTTAAGCAAATCAGTT
AAAAGTTGAGTGACagcaaaccaacatttttttgCACATCCTGGCAAGTC
TTGGCATTACTACAGCTAGCTTTGAGATAAAGTGTTTAAGAGTTCCAGGT
TAATATTTATATTGGAGGTCAATACGCCAAAATTTTACCCCCCCCTGACC
AAACCCCTGATGCATTTACTTCGCTTTTACAATTCATAGCTGCCAACCTG
CATTGAACTAGGGACACCTGCAAAGTATGAAATATAAGATTCCTCCCAAA
TCTCCTGCATTTTTAATATATTTCCAGATTTTTCTTCCTTGCTGATTTTc
ctgaaaatacacttttttacaagcttttctaAAGACAGGTTTAAAAACTT
GAGAtctataatatattttttgctctttttaaACTTCAGATTTCAAATCA
TAAACatttaatcaaaacaaagactGTCACATGACCAATGCAATTCACAA
TTGTGTTTATTTTAATAGAGTGTGGAATGCTGAATGACATACCATATATC
AACATAATACAGAAATTTCAATACCAGTCTTGAGAGCGTTTTCTGTTTCA
TGAGCACATCGATTTTCAAATGGTTATGAactcaaaaatatattattgTC
ATTGGAATATTTTTTCCTGTCACACGTATTGAAAGAAACTGTTCAACAGC
TTATTAATGGTACCATGAGATATACTTTTCTCTTGTTTTGGATATGACTG
TCATAATATGTCAAAATATTTGGTCATTGTCAATGGATTTCACCAGCCTG
TATCGTAAGAAACTGTATATATAATGTTTGGTACGTCATGGTATTCTTAT
CATGGTGGTTATTGTTTACGTGGCATGGGAGTAATTATACGCATTTTTTG
TACAgtattttttttaaggaaaagctaTCTGATTTATACCTAACCTgcat
aaaataattaaaaagttaaaatggtaattcaatttatttttatttcattg
ggTGAATGTTTTCCTAAAACTGAATATTTTTTGTCTTgttataaaatttt
aattgtatCAAAGTATTTATTTCCTCCTGCTGTATAAACAACAGTTTTTT
AGACATTACTTTCATacctttttcata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029850XLOC_029850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046775-exon-scaffold_117-1491911889:402469..406495TCONS_00046775-exon-scaffold_117-1491911889:402469..406495Clytia hemisphaericaexon
TCONS_00046775-exon-scaffold_117-1510915933:402469..406495TCONS_00046775-exon-scaffold_117-1510915933:402469..406495Clytia hemisphaericaexon
TCONS_00046775-exon-scaffold_117-1575043694:402469..406495TCONS_00046775-exon-scaffold_117-1575043694:402469..406495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:402469..406495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120468	0.117475	0	0	0.324915	0.256752	0.15488	0.377765	0.382851	0.440103	0.427175	0.5215	0.320477	0.499228	0	0	0	0	0	0	0	0	0	0.125577	0.452693	0.115434	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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