TCONS_00004577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004577
Unique NameTCONS_00004577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004577 ID=TCONS_00004577|Name=TCONS_00004577|organism=Clytia hemisphaerica|type=transcript|length=716bp
CAGGGGGTTCTTATCCGAATCGTCAACCCGGCTCCTCAGATATCGTGATC
GCTCAATCGACAGTTACCATTGGTGGAAAGCCTTGTCGAATCACATCGAA
AACAATGACTCAAATCAAATGTATAACACCACCATCTGTTGATGAAGTAT
GCCCGAATTGCATGACGGGACCGATTGAAGTATCGGTTGATGACCAAATC
AAATCGACGACCAAGTTTGAATATTCAAATGATGAATCACCAGAGATCAG
TTCAGTTTCACCGACCACTGGAAAGAACGGTGATACGATCAATTTAACAG
GAAACTTCCCACACAGCACAGGAGTGAGTGTCCAGGTTGGAGTTTCAGAG
TGTCAATCAGTGATCGTGGAATCATCCACAAAAATCACGTGTACCCTTCA
ACACCATACAGCTGGAAATACAACTCTCAAAGTCCACATCGATGGTTCGG
GTGATTCAAACAGCGTACCGTTCGTATACGGTTTGAGTGGAAGTGTTTCT
GGCTCACCGTCAAGTGGGTTCGGCGGTGGAATCGAAGTGGAAATCAGTGG
AACTGGGTATGGTGAAGATACCATGGTGACAATTTGTGATGTCGATTGTN
AGTGGAACCGGCTATGGTGAAGATACTATGGTGACAATTTGTGATGTCGA
TTGCCCTGTCAAGAAAGATGAGGTGACTGTCACCAACATCAAGTGTTTAT
CTCCAGCGCAAGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00004577-protein

>TCONS_00004577-protein ID=TCONS_00004577-protein|Name=TCONS_00004577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
GGSYPNRQPGSSDIVIAQSTVTIGGKPCRITSKTMTQIKCITPPSVDEVC
PNCMTGPIEVSVDDQIKSTTKFEYSNDESPEISSVSPTTGKNGDTINLTG
NFPHSTGVSVQVGVSECQSVIVESSTKITCTLQHHTAGNTTLKVHIDGSG
DSNSVPFVYGLSGSVSGSPSSGFGGGIEVEISGTGYGEDTMVTICDVDCX
WNRLW
Run BLAST on NCBI

transcript from alignment at sc0000045:849053..850423-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004577 ID=TCONS_00004577|Name=TCONS_00004577|organism=Clytia hemisphaerica|type=transcript|length=1371bp|location=Sequence derived from alignment at sc0000045:849053..850423- (Clytia hemisphaerica)
CAGGGGGTTCTTATCCGAATCGTCAACCCGGCTCCTCAGATATCGTGATC
GCTCAATCGACAGTTACCATTGGTGGAAAGCCTTGTCGAATCACATCGAA
AACAATGACTCAAATCAAATGTATAACACCACCATCTGTTGATGAAGTAT
GCCCGAATTGCATGACGGGACCGATTGAAGTATCGGTTGATGACCAAATC
AAATCGACGACCAAGTTTGAATATTCAAATGATGAATCACCAGAGATCAG
TTCAGTTTCACCGACCACTGGAAAGAACGGTGATACGATCAATTTAACAG
GTAATGAGAACAAAATGCTTCCCATTCAATTTCAAATTCATAAACTGTTT
AAATTTGATGAATAAGAATTTCGGTGACCACCAGATTGAACATGTTGCAT
GGGCAAGGTTTAAGAAAACAAGAATGCAAGGAGATTCAATGCCTTAGTAG
CAACCTGATTTGTCGTTTGAAATCTCTTTGGATAATTCTTTAAATCAATA
GTTGGCTCACCATCTATTATTGTTGAAACATGGTTAAATATATCTGATGG
TATTTTATATTGCTTCTTTTCAGGAAACTTCCCACACAGCACAGGAGTGA
GTGTCCAGGTTGGAGTTTCAGAGTGTCAATCAGTGATCGTGGAATCATCC
ACAAAAATCACGTGTACCCTTCAACACCATACAGCTGGAAATACAACTCT
CAAAGTCCACATCGATGTACGTATGAGAGAGCTACTTCATAATTCGTTTT
TCGACGTCTTGTGAGGCTGATGAACTACACAGTCAACTCTCTCTGATTCG
AATCTCTATTTTTCGAATTTTTGTGTAATTCGAACTAAAATGTTTATTCC
TTCAGCTTAAAAGTGGTTTGAATTACTCTCTGATTCGAATGAGATTTTTG
GTTGCTTGAAGATCAGATTAGAGAGAGTCGACTGTAATGGCACAAAGTTC
TTGGAGAGTTTTGATGTTTTGAAAAGTATATATTATAGCCCCCCCTTATA
TCTTAGGATTCAACCCTAAATTCTATTTCCTCTTTGTTGAAGAGCGAAAT
ATCACTTTTCGAAGAGTGTTAAACAAATGTAAACATAACTTTCAATAGGG
TTCGGGTGATTCAAACAGCGTACCGTTCGTATACGGTTTGAGTGGAAGTG
TTTCTGGCTCACCGTCAAGTGGGTTCGGCGGTGGAATCGAAGTGGAAATC
AGTGGAACTGGGTATGGTGAAGATACCATGGTGACAATTTGTGATGTCGA
TTGTNAGTGGAACCGGCTATGGTGAAGATACTATGGTGACAATTTGTGAT
GTCGATTGCCCTGTCAAGAAAGATGAGGTGACTGTCACCAACATCAAGTG
TTTATCTCCAGCGCAAGAAGG

Coding sequence (CDS) from alignment at sc0000045:849053..850423-

>TCONS_00004577 ID=TCONS_00004577|Name=TCONS_00004577|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000045:849053..850423- (Clytia hemisphaerica)
GGTTCGGGTGATTCAAACAGCGTACCGTTCGTATACGGTTTGAGTGGAAG
TGTTTCTGGCTCACCGTCAAGTGGGTTCGGCGGTGGAATCGAAGTGGAAA
TCAGTGGAACTGGGTATGGTGAAGATACCATGGTGACAATTTGTGATGTC
GATTGTNAGTGGAACCGGCTATGGTGAGAAACTTCCCACACAGCACAGGA
GTGAGTGTCCAGGTTGGAGTTTCAGAGTGTCAATCAGTGATCGTGGAATC
ATCCACAAAAATCACGTGTACCCTTCAACACCATACAGCTGGAAATACAA
CTCTCAAAGTCCACATCGATGGGGGTTCTTATCCGAATCGTCAACCCGGC
TCCTCAGATATCGTGATCGCTCAATCGACAGTTACCATTGGTGGAAAGCC
TTGTCGAATCACATCGAAAACAATGACTCAAATCAAATGTATAACACCAC
CATCTGTTGATGAAGTATGCCCGAATTGCATGACGGGACCGATTGAAGTA
TCGGTTGATGACCAAATCAAATCGACGACCAAGTTTGAATATTCAAATGA
TGAATCACCAGAGATCAGTTCAGTTTCACCGACCACTGGAAAGAACGGTG
ATACGATCAATTTAACAGGGTTCGGGTGATTCAAACAGCGTACCGTTCGT
ATACGGTTTGAGTGGAAGTGTTTCTGGCTCACCGTCAAGTGGGTTCGGCG
GTGGAATCGAAGTGGAAATCAGTGGAACTGGGTATGGTGAAGATACCATG
GTGACAATTTGTGATGTCGATTGTNAGTGGAACCGGCTATGGTGAGAAAC
TTCCCACACAGCACAGGAGTGAGTGTCCAGGTTGGAGTTTCAGAGTGTCA
ATCAGTGATCGTGGAATCATCCACAAAAATCACGTGTACCCTTCAACACC
ATACAGCTGGAAATACAACTCTCAAAGTCCACATCGATGGGGGTTCTTAT
CCGAATCGTCAACCCGGCTCCTCAGATATCGTGATCGCTCAATCGACAGT
TACCATTGGTGGAAAGCCTTGTCGAATCACATCGAAAACAATGACTCAAA
TCAAATGTATAACACCACCATCTGTTGATGAAGTATGCCCGAATTGCATG
ACGGGACCGATTGAAGTATCGGTTGATGACCAAATCAAATCGACGACCAA
GTTTGAATATTCAAATGATGAATCACCAGAGATCAGTTCAGTTTCACCGA
CCACTGGAAAGAACGGTGATACGATCAATTTAACAGGGTTCGGGTGATTC
AAACAGCGTACCGTTCGTATACGGTTTGAGTGGAAGTGTTTCTGGCTCAC
CGTCAAGTGGGTTCGGCGGTGGAATCGAAGTGGAAATCAGTGGAACTGGG
TATGGTGAAGATACCATGGTGACAATTTGTGATGTCGATTGTNAGTGGAA
CCGGCTATGGTGAGAAACTTCCCACACAGCACAGGAGTGAGTGTCCAGGT
TGGAGTTTCAGAGTGTCAATCAGTGATCGTGGAATCATCCACAAAAATCA
CGTGTACCCTTCAACACCATACAGCTGGAAATACAACTCTCAAAGTCCAC
ATCGATGGGGGTTCTTATCCGAATCGTCAACCCGGCTCCTCAGATATCGT
GATCGCTCAATCGACAGTTACCATTGGTGGAAAGCCTTGTCGAATCACAT
CGAAAACAATGACTCAAATCAAATGTATAACACCACCATCTGTTGATGAA
GTATGCCCGAATTGCATGACGGGACCGATTGAAGTATCGGTTGATGACCA
AATCAAATCGACGACCAAGTTTGAATATTCAAATGATGAATCACCAGAGA
TCAGTTCAGTTTCACCGACCACTGGAAAGAACGGTGATACGATCAATTTA
ACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002571XLOC_002571Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004577-proteinTCONS_00004577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004577-exon-sc0000045-1575043694:850124..850423TCONS_00004577-exon-sc0000045-1575043694:850124..850423Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1575043694:849708..849850TCONS_00004577-exon-sc0000045-1575043694:849708..849850Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1575043694:849053..849325TCONS_00004577-exon-sc0000045-1575043694:849053..849325Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1510915933:850124..850423TCONS_00004577-exon-sc0000045-1510915933:850124..850423Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1510915933:849708..849850TCONS_00004577-exon-sc0000045-1510915933:849708..849850Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1510915933:849053..849325TCONS_00004577-exon-sc0000045-1510915933:849053..849325Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1491911889:850124..850423TCONS_00004577-exon-sc0000045-1491911889:850124..850423Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1491911889:849708..849850TCONS_00004577-exon-sc0000045-1491911889:849708..849850Clytia hemisphaericaexon
TCONS_00004577-exon-sc0000045-1491911889:849053..849325TCONS_00004577-exon-sc0000045-1491911889:849053..849325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:849053..850423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117156	0	0.13433	0	0.113412	0	0.089965	0.0842241	0	0.00274701	0	0	4.36949	4.78825	0	0.169939	0	0.0538422	2.90058	5.69374	0.20297	0	0	0.0729434	0.165785	0.268207	0.0959507	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR002909IPT
IPR014756Ig_E-set
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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