TCONS_00046707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046707
Unique NameTCONS_00046707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046707 ID=TCONS_00046707|Name=TCONS_00046707|organism=Clytia hemisphaerica|type=transcript|length=409bp
agttattgaggtttgaaaaaacactgccagccaATGACACTAATGACATT
TGATGCAGGGgttcaaacattttcaaacgCTTGTTTTATTTGTAGAAGTT
TCTTGGTAATTCAAGATGGGCGCTGTTTTGAATATGGGTTGGAAAGCATA
TGGTGGTGAATGGATACGGGAGGGAGACTATTTGAACAACACACGACATG
TTATACACGTTAAAGATGAGACGCAAAATGAATTTTCACAAGACATAGAG
GTGGTTCACTATGTGTGAGTTTGGCATCATAGAAATATACCTAGATATAT
ATACCTACCTCATAACCTACATTTTTATTATCTAAATAAAGTataatgtt
tcaaaaaaaattggcagtctgcacattttgataaaatgatcTTGAAGGAG
aaggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_116:487204..487762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046707 ID=TCONS_00046707|Name=TCONS_00046707|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_116:487204..487762- (Clytia hemisphaerica)
AGTTATTGAGGTTTGAAAAAACACTGCCAGCCAATGACACTAATGACATT
TGATGCAGGGGTTCAAACATTTTCAAACGCTTGTTTTATTTGTAGAAGTT
TCTTGGTAATTCAAGGTAAGAACTAAGCCTGCATTGATTTCAATCTCTGG
AAGATTGTATTTACACTGCTGTTTTAACAACAACCTTTTGCTATTTCAAT
AGATTGCTAAAATTTAGATCAAGTTATATAAGAAATCATGGGTCAATTTT
GTTTGCATTTTTCAGATGGGCGCTGTTTTGAATATGGGTTGGAAAGCATA
TGGTGGTGAATGGATACGGGAGGGAGACTATTTGAACAACACACGACATG
TTATACACGTTAAAGATGAGACGCAAAATGAATTTTCACAAGACATAGAG
GTGGTTCACTATGTGTGAGTTTGGCATCATAGAAATATACCTAGATATAT
ATACCTACCTCATAACCTACATTTTTATTATCTAAATAAAGTATAATGTT
TCAAAAAAAATTGGCAGTCTGCACATTTTGATAAAATGATCTTGAAGGAG
AAGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029800XLOC_029800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046707-exon-scaffold_116-1575043694:487648..487762TCONS_00046707-exon-scaffold_116-1575043694:487648..487762Clytia hemisphaericaexon
TCONS_00046707-exon-scaffold_116-1575043694:487204..487497TCONS_00046707-exon-scaffold_116-1575043694:487204..487497Clytia hemisphaericaexon
TCONS_00046707-exon-scaffold_116-1510915933:487648..487762TCONS_00046707-exon-scaffold_116-1510915933:487648..487762Clytia hemisphaericaexon
TCONS_00046707-exon-scaffold_116-1510915933:487204..487497TCONS_00046707-exon-scaffold_116-1510915933:487204..487497Clytia hemisphaericaexon
TCONS_00046707-exon-scaffold_116-1491911889:487648..487762TCONS_00046707-exon-scaffold_116-1491911889:487648..487762Clytia hemisphaericaexon
TCONS_00046707-exon-scaffold_116-1491911889:487204..487497TCONS_00046707-exon-scaffold_116-1491911889:487204..487497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:487204..487762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0162215	0	0.663409	0	0	0	0	2.08332	0	0	0	0	0	0	0	0	3.32597	2.54921	0	0	1.48347	0	0.815945	0	0	0	3.60386	3.90239	0.214787	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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