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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004531 ID=TCONS_00004531|Name=TCONS_00004531|organism=Clytia hemisphaerica|type=transcript|length=2825bp
TCTCGCCAAAAAAACAATAGTAAATTATACAGTGTTACTAAGATAAAGAA
ATATTTAGATGGCAATTCAAAAATATTGCAAACATACACTATAgtatgta
cacgcttttttttttataagaatggtgtaaatccatttcatcataaatat
tcttaactttttttggaaaatcatcctaaaatattcttacagcacattct
taggttGGGATCCTtattcatactagatttaacatttagtacatacgtct
caagcataacatggcacttttgtaaaaggagtgagcctaacttggggata
attgataatttataattgaaaatgctcttaaaatggcattcttagcttta
gtagcaaaattccatgatggtgatattcttagcatattcttagttttttt
ttcatcatggacattcttataaagtgtattcttataaaaaaagaagcgtg
tattgacaaaaaataacaaaccaaaatatagaaatattttctaaaatgta
tATAAATTTTTACACTTCCTGAGAAAAAAATGCACTTGTTGGCTGATTGT
GCTActctttggaaaaatattttggtgagacttaattttggcaaattttg
ggAGTATTGTCTTTTTTTACGCTCATTTTCAGGCAAAGAAGTTTTATTTc
cactattcgccaaaataagttcttgcTAAAATTAATTAATCGCGTTACTT
GCCAAAATATGTTCTCGCTAAATTACGGTTTAGTCTCCTCGCCAAAATCA
GTCCGCTTTATGGCAGCTAATTTTTCTATTTGACTTAAGTGAGGTCAAAG
TTAATgaataataaacaaaaatttcgacGAGGTTTTGACTTTGCTAGACA
GAATTACGCGATAATTATTACTCCACACAACCGCCGTCGATTTAACTCGT
TTACAAACTCGCTATTATAAAATTAAAGGAGTTATAAGCACGAATCATAT
TAGAGGCTTATTGTTCCGAGTTGGCAGAACACAGTGACCTTACCAAACCC
GACCAAAGACCGATCTcaaagattatttgaaaataaagtttCAGCTGCCT
CAaaacgtacacgtttttttttattagaacctagtttataagaacattga
ggctgaaattcgtcgaaaaattaagaacatcataagaacatgcccagcct
cagtttggaaaaaaatgacaagaaactacagttttttcctcttttcgaGC
AGTTTCAACTGAACTTAgtgatggattttctaaaatcgagagtcaaatat
tgtccaaattttaccaattttaagtgctctttattttgcatgatattgtc
gatttagaggagtctgaaaaattaggaattttaggtgttctaataaaaaa
aacgtgtatctttaTGTTTATTTTGACTGCGATAAGACTAATAAAAATCC
CACCCATAAAGATTTACAACTTTTGGTTGTAACCCTGAAAGTTAAGCTTT
TGCGAAAGGAGGTCTCAAAAAAGACTCTGCAGCTAGAACCTTATAATCCA
AAAATGTGTACCTACTATAAAAGTGATAAAAATCATGTCTAAAAATTTCA
TGAATATAATGTCAACAGAAATAGAGGTTAAAATATAGCTAAGAAGTTTG
AATCAATCTTCATCAGAATCTATGATAACAATGGCACTCGGTTTAGAGAT
CGGTTTCAGGGCTGTGAGCCGGTTCTTTTCAGCTTTCAATTTGTCTGCTT
TAAGTTTGGCACGAAATCGTTTTAAGGGTGATTCGTAATCTGAAGAATTC
TTAATCGAGTTTGGTTTTGTTGGACTTGCAACAGAATCTTGTTCTTTATC
CAGAGCTGGTATATTCTGATTCGAATCCCTATGACTTTCACTTTGTTTTT
GAATGTTATTTGAAGGGTTTAGAGAGGCCTTTGAGGATTCGAGTGTCTTT
GATTCAGAGTTGGGACGTTTTCTGGAATTATTGAATCCGGGATAGTCTTT
TGCTTGGAAGTTGTTTCTGTGCTCCTCTGGGATTGGATCGCGATTGGTAT
GTTTTTTGTTTGGTGATTTCGATACGGTTTCGGAATGAGACTTTTTCGAA
ATCGAGCTCTCTGTTGCTGGTTTGGGATTAGTGGATGGtatctccttgtt
tgttttcGCATGAATTGTTTTTGAATGTTGATTTGTAATTGCGTTGAAGG
AATAGGATTGAGTTGTTCTTGGTGGTTTCAGTGAAGCCCAAGCAGGCTTT
GAAGAACCCGTAACCTTTGACAACAATTTATTCGGCGAACCAGACCTATC
GTCCGATGGTTTAGTCAACAGGTTTTTAAGGGGGGATTTCGATAGTGTGA
CAGTGGAAGATTTGGTGAGTGTCGAGTTCGGATTTTTTGGTGAAGCAGAT
GACTTTAAGAACTGAGGAGAAGTACTGCTTTTCAAATCTGACGATTTCCC
AGTAAATACCGACGATGTTACAGGTGACGATGAGGTGGATACTTTCGGCG
TTGACGGTCTAACGAGTGGTGAAGTAGAAACTTTCGGTGGTTTAACGAAA
GTTGACGCGGGTGCTTTCGATAGTAATGATGATTTAACGAGTGATGAGGT
AGAAACCTTCGAAGTTGCGGGTTTAACAAAAGTTGACGTAGGTACTTTTG
GTGTTGGCGACGGTTTGACAATCGGCGTGGATAAGGAACTAGGCGATGCG
TTTACGGTGACTTGGCAATCGATTTTCTTCTGCGGTTCTTCTTGTGAAGA
AGAAAGGGTGACGTTGATTACTGTAGTGCTACTGCTACCTTTCTTCTTCA
TCTCTGTCGATTTCATTTTCTTGGAAGGTGGTTGACCTTTGATCTTCGAT
TTGATGAGTTTCTGTTTAACCTTTG Run BLAST on NCBI transcript from alignment at sc0000045:777816..780698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004531 ID=TCONS_00004531|Name=TCONS_00004531|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at sc0000045:777816..780698+ (Clytia hemisphaerica)
TCTCGCCAAAAAAACAATAGTAAATTATACAGTGTTACTAAGATAAAGAA
ATATTTAGATGGCAATTCAAAAATATTGCAAACATACACTATAgtatgta
cacgcttttttttttataagaatggtgtaaatccatttcatcataaatat
tcttaactttttttggaaaatcatcctaaaatattcttacagcacattct
taggttGGGATCCTtattcatactagatttaacatttagtacatacgtct
caagcataacatggcacttttgtaaaaggagtgagcctaacttggggata
attgataatttataattgaaaatgctcttaaaatggcattcttagcttta
gtagcaaaattccatgatggtgatattcttagcatattcttagttttttt
ttcatcatggacattcttataaagtgtattcttataaaaaaagaagcgtg
tattgacaaaaaataacaaaccaaaatatagaaatattttctaaaatgta
tATAAATTTTTACACTTCCTGAGAAAAAAATGCACTTGTTGGCTGATTGT
GCTActctttggaaaaatattttggtgagacttaattttggcaaattttg
ggAGTATTGTCTTTTTTTACGCTCATTTTCAGGCAAAGAAGTTTTATTTc
cactattcgccaaaataagttcttgcTAAAATTAATTAATCGCGTTACTT
GCCAAAATATGTTCTCGCTAAATTACGGTTTAGTCTCCTCGCCAAAATCA
GTCCGCTTTATGGCAGCTAATTTTTCTATTTGACTTAAGTGAGGCTGGTT
ACTGTAAAGACAATAtcagttttgtttattttactgTCGTCCAGCAGTAA
GGTCAAAGTTAATgaataataaacaaaaatttcgacGAGGTTTTGACTTT
GCTAGACAGAATTACGCGATAATTATTACTCCACACAACCGCCGTCGATT
TAACTCGTTTACAAACTCGCTATTATAAAATTAAAGGAGTTATAAGCACG
AATCATATTAGAGGCTTATTGTTCCGAGTTGGCAGAACACAGTGACCTTA
CCAAACCCGACCAAAGACCGATCTcaaagattatttgaaaataaagtttC
AGCTGCCTCAaaacgtacacgtttttttttattagaacctagtttataag
aacattgaggctgaaattcgtcgaaaaattaagaacatcataagaacatg
cccagcctcagtttggaaaaaaatgacaagaaactacagttttttcctct
tttcgaGCAGTTTCAACTGAACTTAgtgatggattttctaaaatcgagag
tcaaatattgtccaaattttaccaattttaagtgctctttattttgcatg
atattgtcgatttagaggagtctgaaaaattaggaattttaggtgttcta
ataaaaaaaacgtgtatctttaTGTTTATTTTGACTGCGATAAGACTAAT
AAAAATCCCACCCATAAAGATTTACAACTTTTGGTTGTAACCCTGAAAGT
TAAGCTTTTGCGAAAGGAGGTCTCAAAAAAGACTCTGCAGCTAGAACCTT
ATAATCCAAAAATGTGTACCTACTATAAAAGTGATAAAAATCATGTCTAA
AAATTTCATGAATATAATGTCAACAGAAATAGAGGTTAAAATATAGCTAA
GAAGTTTGAATCAATCTTCATCAGAATCTATGATAACAATGGCACTCGGT
TTAGAGATCGGTTTCAGGGCTGTGAGCCGGTTCTTTTCAGCTTTCAATTT
GTCTGCTTTAAGTTTGGCACGAAATCGTTTTAAGGGTGATTCGTAATCTG
AAGAATTCTTAATCGAGTTTGGTTTTGTTGGACTTGCAACAGAATCTTGT
TCTTTATCCAGAGCTGGTATATTCTGATTCGAATCCCTATGACTTTCACT
TTGTTTTTGAATGTTATTTGAAGGGTTTAGAGAGGCCTTTGAGGATTCGA
GTGTCTTTGATTCAGAGTTGGGACGTTTTCTGGAATTATTGAATCCGGGA
TAGTCTTTTGCTTGGAAGTTGTTTCTGTGCTCCTCTGGGATTGGATCGCG
ATTGGTATGTTTTTTGTTTGGTGATTTCGATACGGTTTCGGAATGAGACT
TTTTCGAAATCGAGCTCTCTGTTGCTGGTTTGGGATTAGTGGATGGtatc
tccttgtttgttttcGCATGAATTGTTTTTGAATGTTGATTTGTAATTGC
GTTGAAGGAATAGGATTGAGTTGTTCTTGGTGGTTTCAGTGAAGCCCAAG
CAGGCTTTGAAGAACCCGTAACCTTTGACAACAATTTATTCGGCGAACCA
GACCTATCGTCCGATGGTTTAGTCAACAGGTTTTTAAGGGGGGATTTCGA
TAGTGTGACAGTGGAAGATTTGGTGAGTGTCGAGTTCGGATTTTTTGGTG
AAGCAGATGACTTTAAGAACTGAGGAGAAGTACTGCTTTTCAAATCTGAC
GATTTCCCAGTAAATACCGACGATGTTACAGGTGACGATGAGGTGGATAC
TTTCGGCGTTGACGGTCTAACGAGTGGTGAAGTAGAAACTTTCGGTGGTT
TAACGAAAGTTGACGCGGGTGCTTTCGATAGTAATGATGATTTAACGAGT
GATGAGGTAGAAACCTTCGAAGTTGCGGGTTTAACAAAAGTTGACGTAGG
TACTTTTGGTGTTGGCGACGGTTTGACAATCGGCGTGGATAAGGAACTAG
GCGATGCGTTTACGGTGACTTGGCAATCGATTTTCTTCTGCGGTTCTTCT
TGTGAAGAAGAAAGGGTGACGTTGATTACTGTAGTGCTACTGCTACCTTT
CTTCTTCATCTCTGTCGATTTCATTTTCTTGGAAGGTGGTTGACCTTTGA
TCTTCGATTTGATGAGTTTCTGTTTAACCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004531-exon-sc0000045-1491911889:777816..778608 | TCONS_00004531-exon-sc0000045-1491911889:777816..778608 | Clytia hemisphaerica | exon |
| TCONS_00004531-exon-sc0000045-1510915933:777816..778608 | TCONS_00004531-exon-sc0000045-1510915933:777816..778608 | Clytia hemisphaerica | exon |
| TCONS_00004531-exon-sc0000045-1575043694:777816..778608 | TCONS_00004531-exon-sc0000045-1575043694:777816..778608 | Clytia hemisphaerica | exon |
| TCONS_00004531-exon-sc0000045-1491911889:778667..780698 | TCONS_00004531-exon-sc0000045-1491911889:778667..780698 | Clytia hemisphaerica | exon |
| TCONS_00004531-exon-sc0000045-1510915933:778667..780698 | TCONS_00004531-exon-sc0000045-1510915933:778667..780698 | Clytia hemisphaerica | exon |
| TCONS_00004531-exon-sc0000045-1575043694:778667..780698 | TCONS_00004531-exon-sc0000045-1575043694:778667..780698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:777816..780698 + |
Blast
The following BLAST results are available for this feature:
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