TCONS_00046725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046725
Unique NameTCONS_00046725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046725 ID=TCONS_00046725|Name=TCONS_00046725|organism=Clytia hemisphaerica|type=transcript|length=653bp
CTTGTTCAGTATTTTCGAGAGAACCCACATTTTAAACATTTCGAGAATCA
TTAAAAGTTAAAACCACACTACAACCATGGTCGGCAAAATTAGATTATGT
TTTCTTTTAGCAACATTTTTTATTGTTGTCATGGTACCAACTGAAACAGA
GGCATATCAATGCACGACTAGCCCGTGTTCAATGTACGCCTATGGTAAAC
CGAAGCCCTGGGTTTTCATTGGAAAGGAAAGATGCTTTGCTGGAGAAGTG
TTTGGAAGAAGAAGCAGCCGACGGAGAAGTGGAAGTTGGAGACCCTACTA
CAAATACACTTTCTGTCGATTGTAACTCCTtagtgaatgaatgaatgact
gaataaatgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgagtcACTTTAGAAAG
ACATATCTTTTCCAAGCGAAAGACGAATTCCAACGTTTTCAGGCCTTTTC
ATTCATTCGAGGTCTAAGTTTTTTCTATAATTGCattttgtgataatttt
ttCATGTTGTatgtctgtccagatataattggcagtggaaacaagaatgc
ctgtaacttttgatagtcaaatataattatggaaattttttttgcttgtt
tta
Run BLAST on NCBI

transcript from alignment at scaffold_116:112466..113118

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046725 ID=TCONS_00046725|Name=TCONS_00046725|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at scaffold_116:112466..113118 (Clytia hemisphaerica)
taaaacaagcaaaaaaaatttccataattatatttgactatcaaaagtta
caggcattcttgtttccactgccaattatatctggacagacatACAACAT
GaaaaaattatcacaaaatGCAATTATAGAAAAAACTTAGACCTCGAATG
AATGAAAAGGCCTGAAAACGTTGGAATTCGTCTTTCGCTTGGAAAAGATA
TGTCTTTCTAAAGTgactcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcattta
ttcagtcattcattcattcactaAGGAGTTACAATCGACAGAAAGTGTAT
TTGTAGTAGGGTCTCCAACTTCCACTTCTCCGTCGGCTGCTTCTTCTTCC
AAACACTTCTCCAGCAAAGCATCTTTCCTTTCCAATGAAAACCCAGGGCT
TCGGTTTACCATAGGCGTACATTGAACACGGGCTAGTCGTGCATTGATAT
GCCTCTGTTTCAGTTGGTACCATGACAACAATAAAAAATGTTGCTAAAAG
AAAACATAATCTAATTTTGCCGACCATGGTTGTAGTGTGGTTTTAACTTT
TAATGATTCTCGAAATGTTTAAAATGTGGGTTCTCTCGAAAATACTGAAC
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029811XLOC_029811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046725-exon-scaffold_116-1491911889:112466..113118TCONS_00046725-exon-scaffold_116-1491911889:112466..113118Clytia hemisphaericaexon
TCONS_00046725-exon-scaffold_116-1510915933:112466..113118TCONS_00046725-exon-scaffold_116-1510915933:112466..113118Clytia hemisphaericaexon
TCONS_00046725-exon-scaffold_116-1575043694:112466..113118TCONS_00046725-exon-scaffold_116-1575043694:112466..113118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:112466..113118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401601	0.581316	1.52264	3.14387	0.153344	0.345535	0.315042	0.26903	2.26144	0.691953	0.999287	0.582642	0.141089	0.466655	0.461763	0.330529	0.737307	0	0	0.465011	4.44888	3.19172	32.3999	69.9504	3.94296	33.0088	17.0805	19.2742	5.51693	4.93222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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