TCONS_00046537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046537
Unique NameTCONS_00046537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046537 ID=TCONS_00046537|Name=TCONS_00046537|organism=Clytia hemisphaerica|type=transcript|length=1951bp
tacgatcgttaattacattcgaaaatatttaaaacaaaagaagagagaaa
aacaaagggcGGGTAAGCATgagcagaaattaaaattactaaatgtagat
aggccttaaatttcaaaacaaaggctgaataaagtctaaaccagactcta
tccgatctgtcaatcaaaacaaacttatcgagaacaaaaacattgcttgc
gaaaacgaaagtggtgacacacagcaTACAGAACACGGCTATTAATATCT
AGAAGAACAACGAGAAAATGGACGCAGAGAAACTGCGAAAACGACAGTTA
AAACGAGAAAGAGAGCATAAGCAGAAACATAAATCAGGGAAGAGAGAACT
ACCTgatgaaaaagcagaaaaacaaaTGTACGAAATGAACGTACCAGAAC
GTGGTGTTGTGATCTCGAATGTCAGCACGTTGTTCAATTTGGATGAAGAA
ATTTGCGATGTAACTGTTTTGACGTACGAATCACCTAAAGAAGTTCTGAA
ATTACCATCAAAACGAGAGTCCGTTTGAAGAACTTCTGACGCTCTGTGAT
GAATGGAATTTGCTTGCGTTTCGAACAAGTATCGAGGAATACTTCATCGA
ACATCATCAATATGGTTGCAATTATTTTGATGGAGATGTCGGTCCGGAGC
ATATCAAGTTATTCTACATATTAGAGAAATTCAACTTTGGTAATATTATC
AACATGTTTGTAGAAGACTGTTGCAtcagtgatgacgtcataaagaATTA
TAAAGAGTGTGGCTTAGAGAAACTCAGTAAAGAACTCCAATATGAAATGT
TGAAAGTGGAAATTTTAGATATGTTGGAAGTGAAGTCAAACAGAAGTGAA
CTCCATactattttgaatttctttaattttctggTTCATGAAGATCGTGT
CGTAGACCAATACGCGAAAAATGGTTACAAAAAGCAAATCGAATATGGAA
TTTATGAAGAAATCAAACAGAGCGATTTTGAAGAGAAGAGGTTTGGTGCC
GACGTGACAATCATCGTCAGCGACACAAAATTGTACGTCAATTCTCAAAT
CTTGATGGATAACTCACCAGTTTTCAAGAGGCGCCTTGAGAATCTTGGAG
ATAAAGAGTTGGTGCTGGAATTACCTTGGAAAAACACTAAGGAGGTCGTC
CTATTCTTCACCTTTCTTACAAAACCGTGCAAAATTGAACGCGATGTTGA
TTTGTACGCATTAGCATCAATATGTCAAGAATATCAAGTCCAGTGGATCA
TCGATAAAATCGGAAACTATATTTCCACAAAAGTTAAATTTGGGGGTGAA
ACGTACCAATCTCTGTTAAGATTCTTAAAACTAGCTTGTATGATTAAAAA
GGAAGATGTTGTTAAAAAACTGATTCAAATTTTGGATCAGCCTTTTCAAT
TGTTGAAAATGACTGAGGAATTCACTTGGCTGAACACATCGGCTAAAATA
TTGGTGGCTCGAAAATGCCTGTTTACGTTAGCTGAGGAGTCGTTTAATGA
ATCTGAAGCATCTTTACCGGCAAATCGAGTGAAATTCAATTTACTGATGA
ACGAAGATGGGTGTGGTTTACTGAATATACTTCAAGAGTATTCACAAATT
GAGTTTGATTTCCAGAATGATAATGATGAGGAGGAAAAGgatgattgaaa
atttcaaaattttaacttttgcctttttgggcacaaacgtcttttggacg
tctaatgtacgttNtttattcaaaattttaccttTTGCAAAAGGTACACT
GTACAGTGGATGAAAATTAGTTGAAACTTTTCTGGGTGGTGAGCCCATAA
ATTTTCttaagatatttttattttattttctgtatTTCTTGGTATTTTGG
TACAAagtcttaaatgttcttattatgTTCTGAAATTTTTAGCTTCAATA
CTTTGTTCTTATTAGAATAAACATATGAGTGTTTTAACAACTAAGTGTTT
G
Run BLAST on NCBI

transcript from alignment at scaffold_113:262917..265403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046537 ID=TCONS_00046537|Name=TCONS_00046537|organism=Clytia hemisphaerica|type=transcript|length=2487bp|location=Sequence derived from alignment at scaffold_113:262917..265403- (Clytia hemisphaerica)
TACGATCGTTAATTACATTCGAAAATATTTAAAACAAAAGAAGAGAGAAA
AACAAAGGGCGGGTAAGCATGAGCAGAAATTAAAATTACTAAATGTAGAT
AGGCCTTAAATTTCAAAACAAAGGCTGAATAAAGTCTAAACCAGACTCTA
TCCGATCTGTCAATCAAAACAAACTTATCGAGAACAAAAACATTGCTTGC
GAAAACGAAAGTGGTGACACACAGCATACAGAACACGGCTATTAATATCT
AGAAGAACAACGAGAAAATGGACGCAGAGAAACTGCGAAAACGACAGTTA
AAACGAGAAAGAGAGCATAAGCAGAAACATAAATCAGGGAAGAGAGAACT
ACCTGATGAAAAAGCAGAAAAACAAATGTACGAAATGAACGTACCAGAAC
GTGGTGTTGTGATCTCGAATGTCAGCACGTTGTTCAATTTGGATGAAGAA
ATTTGCGATGTAACTGTTTTGACGTACGAATCACCTAAAGAAGTTCTGAA
ATTACCATCAAAGTATGTAAACTTCATCTCAGAGAAATTAAAGACATTGG
TTGCTGAAGAGACTGGAGAAATTGATGTCACTAGTCTGGATGTCTCGATA
GAGAGTATCGAGCAAGCTATCTCGTTTTATCATCCTAAAAATTCTATCAA
ACTGGAAGGTAACACAGTTGTTCTCTTGATAAAAGATGTCCAAAGTCTAC
GTGAATCAAAATGAATATTTTAAAATCTTTGAACTGGTGAGCCTTAAGTT
CATTTTTCAAACCTATTCTAATGGTTCCTACTTACATTTACTACTTTAAA
TTGACGAATAGATCTTCGGCAATTTCCTCTCAGAAGGCATAAATTTGTAT
ATAAAATGTATAATTTCCGTTTTAGACGAGAGTCCGTTTGAAGAACTTCT
GACGCTCTGTGATGAATGGAATTTGCTTGCGTTTCGAACAAGTATCGAGG
AATACTTCATCGAACATCATCAATATGGTTGCAATTATTTTGATGGAGAT
GTCGGTCCGGAGCATATCAAGTTATTCTACATATTAGAGAAATTCAACTT
TGGTAATATTATCAACATGTTTGTAGAAGACTGTTGCATCAGTGATGACG
TCATAAAGAATTATAAAGAGTGTGGCTTAGAGAAACTCAGTAAAGAACTC
CAATATGAAATGTTGAAAGTGGAAATTTTAGATATGTTGGAAGTGAAGTC
AAACAGAAGTGAACTCCATACTATTTTGAATTTCTTTAATTTTCTGGTTC
ATGAAGATCGTGTCGTAGACCAATACGCGAAAAATGGTTACAAAAAGCAA
ATCGAATATGGAATTTATGAAGAAATCAAACAGAGCGATTTTGAAGAGAA
GAGGTTTGGTGCCGACGTGACAATCATCGTCAGCGACACAAAATTGTACG
TCAATTCTCAAATCTTGATGGATAACTCACCAGTTTTCAAGAGGCGCCTT
GAGAATCTTGGAGATAAAGAGTTGGTGCTGGAATTACCTTGGAAAAACAC
TAAGGAGGTCGTCCTATTCTTCACCTTTCTTACAAAACCGTGCAAAATTG
AACGTAAGTGACAGAACTCTTTTTTATTTCGAGATTCTGAAAATGTGTTA
CTTTTTTTCTTAGAATGCTATTTTAGCCATTATTTAATTAAAAAAATCAT
CAAAATGAAATCGAGAATTTTCACGATTTTGATTCTCGTTTTGACATTAA
TTTTGTGCAATTGATGTCATTTTTAGGCGATGTTGATTTGTACGCATTAG
CATCAATATGTCAAGAATATCAAGTCCAGTGGATCATCGATAAAATCGGA
AACTATATTTCCACAAAAGTTAAATTTGGGGGTGAAACGTACCAATCTCT
GTTAAGATTCTTAAAACTAGCTTGTATGATTAAAAAGGAAGATGTTGTTA
AAAAACTGATTCAAATTTTGGATCAGCCTTTTCAATTGTTGAAAATGACT
GAGGAATTCACTTGGCTGAACACATCGGCTAAAATATTGGTGGCTCGAAA
ATGCCTGTTTACGTTAGCTGAGGAGTCGTTTAATGAATCTGAAGCATCTT
TACCGGCAAATCGAGTGAAATTCAATTTACTGATGAACGAAGATGGGTGT
GGTTTACTGAATATACTTCAAGAGTATTCACAAATTGAGTTTGATTTCCA
GAATGATAATGATGAGGAGGAAAAGGATGATTGAAAATTTCAAAATTTTA
ACTTTTGCCTTTTTGGGCACAAACGTCTTTTGGACGTCTAATGTACGTTN
TTTATTCAAAATTTTACCTTTTGCAAAAGGTACACTGTACAGTGGATGAA
AATTAGTTGAAACTTTTCTGGGTGGTGAGCCCATAAATTTTCTTAAGATA
TTTTTATTTTATTTTCTGTATTTCTTGGTATTTTGGTACAAAGTCTTAAA
TGTTCTTATTATGTTCTGAAATTTTTAGCTTCAATACTTTGTTCTTATTA
GAATAAACATATGAGTGTTTTAACAACTAAGTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029701XLOC_029701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046537-exon-scaffold_113-1575043694:264892..265403TCONS_00046537-exon-scaffold_113-1575043694:264892..265403Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1575043694:263851..264528TCONS_00046537-exon-scaffold_113-1575043694:263851..264528Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1575043694:262917..263677TCONS_00046537-exon-scaffold_113-1575043694:262917..263677Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1510915933:264892..265403TCONS_00046537-exon-scaffold_113-1510915933:264892..265403Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1510915933:263851..264528TCONS_00046537-exon-scaffold_113-1510915933:263851..264528Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1510915933:262917..263677TCONS_00046537-exon-scaffold_113-1510915933:262917..263677Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1491911889:264892..265403TCONS_00046537-exon-scaffold_113-1491911889:264892..265403Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1491911889:263851..264528TCONS_00046537-exon-scaffold_113-1491911889:263851..264528Clytia hemisphaericaexon
TCONS_00046537-exon-scaffold_113-1491911889:262917..263677TCONS_00046537-exon-scaffold_113-1491911889:262917..263677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:262917..265403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19594	0.259228	0	0.778605	1.1596	2.8096	2.14685	0.858587	0.471487	0.672712	0.422326	0	0	0.64352	0.601111	0	0.563805	0.741698	0.165301	0.475914	0.595247	0.590487	0	2.59657	3.18912	0.745384	0	0.838851	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top