TCONS_00046349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046349
Unique NameTCONS_00046349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046349 ID=TCONS_00046349|Name=TCONS_00046349|organism=Clytia hemisphaerica|type=transcript|length=486bp
ttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCCATG
ACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACGCAG
GGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGTAAAGAGATTGGGA
AAAAATGGAGATTGATGAGATaaagattgagtttaatgatgTACATGAAT
CGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATTGCACGAT
TCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGGAAGCAGT
AGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACA
ATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCT
CTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTA
CACCTCAATTAAAAACACTTTGAAGCAATCATCCGG
Run BLAST on NCBI

transcript from alignment at scaffold_109:70689..77012+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046349 ID=TCONS_00046349|Name=TCONS_00046349|organism=Clytia hemisphaerica|type=transcript|length=6324bp|location=Sequence derived from alignment at scaffold_109:70689..77012+ (Clytia hemisphaerica)
ttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCCATG ACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACGCAG GGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGGTAAACTTTGAATT TTTAGCAGTCCAGCTTTCTGTGCGATTTTGAGCTTCGCTGCGAAACGCAA CCAGAAAGAGAAAACAAGACCCCTCCTGTTTTAACCAGTCAAGTACCAGA CAGtactaattgataaatttgatTATCCAAACAAAGTAATCGAtaaggcc aggcccaattgattgtttggttcgtgtcctagaAGCTTTGATAAATGGGT TGGTccgtcagtcggtcggtcggtagctaAAGGCTAAAGATggaacattt tttcattttcccaccaaaaacctccatttttgaaattcctcaaGCAATCG CGCAATTCTAGAATCCAACCACGACTGTAAAGAAATAGCCTAAAGCCCGG ATCCTCAAAGGCCAAGgcacgcgctgcgatcgcaaGATAACTTCTAGTTG AAGATTAAGACGTTTGCGGCGTGTGCTTTAAAGGAATATAGCTGTAGACT CTCTCTGCTTTTTAGGTGTTGATATTTGTTTTTACNGAAAAGGTCTATAC AGCTGTAGACTCTCTCTGCTTTTTAGGTGcttgatatttgtttttaagta ccCCCGTGGGTTACACCGGGACATTTTCTGTGCACAAAGTGGATGTTGTT TATAGAAGAATCAAAGCAGTCAGttataaaaaaagaacagcAGAGATAGT AGTTATCATGTGAAAAGGaggtagaatttttttgatttttcctactcaaa gtgaaacactttttctcaaaaatttacaGTTGGTTggaggacacgaacca aactgTCAAttgcagtgctgcaaataacggccggtgaccggtaattaccg gtcattttTAAGCTAATATGTGTGTTTTTTCCCGAGAAATTTTGATGGTT TCATTGTTAGTGATTTCTGATTGAGTAATCACCGTCCAAATTGAAattcc ttatttgcagcactgaatTGGGCCTGCCCTAATGATCAAAGTAATCGAAC GACTATTTATcgtttatcaaattttgagtaccaaaatttcaaaaacattg tgAGTCTTCGATCACTTTCTTAATAAATTATCGGAGAGTAtatatagacc taactcttcatacaaaactTACcagaaacgcatatttggactttgtaccc tatgctgcacacaagcacttaagccaaagtcctgcaaaggcgggacaaaa atcagaagtttgcaaaaaacgcCACGTacaagatctttcaaattcagtat gcgaatagagcagtaaaaaatacaacttttcctatttttcttattttttg caaaagttctaggaacgAAAATAAAGGGATATATCCGCTGATGATCCGCG GTGCCAACTATTGTAACAATAACCAtttgagtactttgattgttattgat tacttccgataacttcgataaccaattgattacttcgataaccAATACCG ATACCTTGGAaaaaggcgctgtggtatagtggtcattgaccttggttact gcacaggcgactgaggttcgattcccactcgcagcggttcacttggcaag tgaatgaacccatgccatgtgaggggaattgggtagtcagtccaaggtgc tggcggggcgctcattgaaagcgtctatagttgcgaaaataggcctcaaa gcctcctgcaactcaaccaaatagaaaaatagaaataggaaaaaccaaaa acagTGACCTAAAACCAAACCACAAAAAGAAGCCATAAGAATCACCTTCA GTACTTCCCCGTTTTGAATGTGCTTGCTCTGGGTTTCCTTAAATAAACCA AATCACGCATTTTGATTGGTCGGAGAGAGCAAAAGTGGTTTTCCCACGTA AATCGCGTGTTTTTATTGTACAAAATAAACTATTTTATTGGACGAGATGA ACTCAGTTTCAGATTCCATCGCTTTGCTACAGGAAGCATATCCGACACaa tcgaaggtattcaatatgatcgaaagTGATTGAACATACAATCaaacaaa tcgaaaatggtCAAAGAAAATGCCATGATTAAGAGTTGAGGGATTATTCA ATCACCGATAGAATCAATAAGTGGTCACTGATCaccttcgattattatcg atcattattgattacttcgatcacaatcgaatgttcgattagtaccgtct ggttttaagtttgtttacatatgactcgattttgctagtCTCCATCTGtc catttccaacaaaaagcagttatgaaaacaaaagtaaacgAGTCATAGTG TGCCTACTAAttgcgagggtgtcaaataccacgtgtttcTGCGTGTTTAA TAGTAAAATTAACgttagaaatttttgtttatttactttttttaactttt ctgctgattcagcattctgCTGATTCAGTTGATAAAGTATAGATAAACGA ATAAATAAAATAGCaaagtagcgagttgataaagcaacagataaacaaat gaagaaaGTAGCAAAGAAGCGAGTAGAAAAAGCAATAGAttaacgaatga agaaagtcaGGAGGTATTTTTTAACTTCGCATTTTTGagttagaaaatct tttttggtcgctaaatctaaaattcacttcGCAACTaaagcacttaagct aaagtcccgcaaaagtgggacaaaaatcagtttcttgaagtttgcaaaaa aacgccacatagaagacacaacttttgttgacgtcaaaccaaaggtttta tttttccgtgaactttgaacccttctaacattttttctatgtatgctaaa gcatTCCGGattttactaaaagaaagcctgtgatcttagctttcaagcgg tatataacactgtggacacgggctagacggcaaatttgTCTGCTACGGGA ATGAAAAAAGTTGCAACTATTGatgaacaaatgtttctggaaatggagga actcatagttgaaggctgaaactctgtatgtttatcagaaaaaggttgag gaattcaaaaatcgctagttctagttctttcatcttcatgtagttttttt tagcatgggaatgtcccaaaaatcagggttttctcctttttctttactta taactttttgttcctccatttccagaggcctaccaccttttttggctcat ttcaaccttttccaagctattttcttcaaaaacaaaaataaaacaatgca atgtcttcttttctcaaaaaaaggatatatcttttgttatcttgataaat atactaaatattttacaaatatttttatataataatattctaacaccatc aaagaattccaTAGCGCCAGCCTGGATTTAGGTCCCatgcaaaaattagg tcccccctgagttttaagtccccccaaagaaTTATGAATCTTTTGTTAGC CCCAAGgacttttgactttttagacactttcaaaaaattgatccagtaaa aaagggttttccaatTTAAATTGTGTTCAGTTCTAAGTTTTTAAGATCAA ATATTTTGCACACTATTTATAAATATATTGCGCCGCAgactaaaaatttt cagattcatgagcttcaatttgagtaattgaaccaactattaagctgaat tattttagcccccacgtaagtgatgagattttagttCCCCCCAAGTAAAT AGATCCCCCTAAAAAAGTGGCGTAGTTCCAGGCAtctccttttttgggaa agaTTTGGGGTGTAACCCCTCCCCCAACCAGCagggggggctgacgctat gaattctccctccaaatttcaggtctctagctacactagaaaaagagata tgcaaaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCAGGT AGGTCTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTGCCAATTTGA GATGTTCATTTTGtgtgagataaaaatttcgcAGCGAAATCTGAAATTTT AGCCTGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaattttttccc aaaatgggtatattcaaaaatttagaatattggggaaacttttttccaaa aatgagaaaattggGAGAACATTTTTTCcctaaaattagaaaattctttt aattctgaaaatcagaaaatcggggtaactttttcaaaagttggaaaaat caaggaaaatttttctcaaaaatgcttgAGAAatccaacttttcaaaaat tgcacAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAATGCATGAGAG TTGCTGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGCTATTTTAAT TAAGGTCTATAAATTCCATGCTATCAGTTTATATTTGTGAATGACCAAAA TCTATCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTTTAGGTAGGA GACCTATTTCACTGATACaggaaaatctcaaaaaaatacATAGAGGACAg ttaaaaacaaagttttcacGAAAATTCTTTACAAAAGTCctcattttctt ctttgtcaaattttttcattgcaatttttaaattttcatattcaagGATA GTTGCTCTACCAGAAAATGTATATCATACCAaagttttgtgggctacatc aggcagaaatttGTATTGCGTATGtgtcaaatatgaaaaattggtcagag ccctttaaaagaaccatttgaTAATCAATCGATTCAATCTATAGATAATC AAGCCTTCCTTTAAAATCCTGATAATAGATTACCAATTCTTATTGattat tggaattttttattgatCTATTGGTcatcaattgaaaaaaaattgttgat ttgtCAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGATATCTCTTAA AGAaacattgaaaagctttttctaGAGGGTGCTAGCAATATGCAGAATTA AGTGTTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTTGTATCTCAG GAAAGATTAAACATTGTTAAAACAGGctaaaaaattaaagatttttgaaa tgtttcctCTTGGTTCGGTTCAAGTTGATAATTTgttataattttatttc ttacaAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGATTGATGAGAT aaagattgagtttaatgatgTACATGAATCGCCCATGGAACATGAAGTTC CTGCTCAAGCCCTCATGACATTGCACGATTCTGTACAAAACATGCCAAGT AAACAAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTTACAATTGTC TTGAATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGTCCTTTTAAT TTATATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAATACTATTGT CGTTTCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTCAGACAGTAC TAAAAgggttttcaagtttttttttgcatgataCCCCAATAGCACCACCC CATCATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTTGAACTTACA AAATGGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCATTCGTTAAT TACCAGCACTTCTCGGGACTGACTGataaattttttatgatttcttGAGG TTTTCTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATATAATGTTTCT GTTGATCAGCCAGGTGGGTCTATAAAATTAAAGTATCacttattttttat taatttagcAAACATTATAGGCATAtgattaaaatgtaaaaataactttt tttaaaggagaaaattattttcgaaaaatttagggaaaattctaaaaaag atttaaagaagATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTAT AAaaggattttaatttttttggtatacCATAACAATTTCACTTTAACGTC acgatgtctgagattttaatatgctaaaatttccagggttaAAAGATTGA TTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAA CATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTC CACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATC ACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGA ACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGAT TTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTACACCTCAATTAA AAACACTTTGAAGCAATCATCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029594XLOC_029594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046349-exon-scaffold_109-1491911889:70689..70824TCONS_00046349-exon-scaffold_109-1491911889:70689..70824Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1510915933:70689..70824TCONS_00046349-exon-scaffold_109-1510915933:70689..70824Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1575043694:70689..70824TCONS_00046349-exon-scaffold_109-1575043694:70689..70824Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1491911889:75804..75959TCONS_00046349-exon-scaffold_109-1491911889:75804..75959Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1510915933:75804..75959TCONS_00046349-exon-scaffold_109-1510915933:75804..75959Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1575043694:75804..75959TCONS_00046349-exon-scaffold_109-1575043694:75804..75959Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1491911889:76819..77012TCONS_00046349-exon-scaffold_109-1491911889:76819..77012Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1510915933:76819..77012TCONS_00046349-exon-scaffold_109-1510915933:76819..77012Clytia hemisphaericaexon
TCONS_00046349-exon-scaffold_109-1575043694:76819..77012TCONS_00046349-exon-scaffold_109-1575043694:76819..77012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:70689..77012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.94148 0 0 0 0 0 0 0 0.546751 1.24784 1.47073 0 1.54777 0.459929 0.607214 0 0.179439 1.08596 0 0.000195708 0.333021 0 1.47236 2.58908 0 0 0 0 2.70269 0.632661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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