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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046163 ID=TCONS_00046163|Name=TCONS_00046163|organism=Clytia hemisphaerica|type=transcript|length=1250bp
CAACACAAAGACACGAACAAGAAATTGTCGCTGACATCACACATCTTGAA
CATGACGAAGTCAACTTCACCAGCAAATAAAATGGAGGTCTCAAAACAAG
ACAATACTACTGACGGATTAAACAACATTACATCAGCCTTTGGATTTTTC
GCCCTGACACAATTGATCACAGGGCTTTGTTATGTATCCTATTATTCATA
CCACAGGAGTCTTTTTGAATctcttttcaatgaaactggAATGAATATCT
TTGCTGTGGTCAATGGAATACTGttgTTGATCAATGGAGTATCGAACGCA
GCGACAGCTTACCAGAACAAAAGAGCAAAAGCTATTTTTGTTTTCTCGCT
TGTTTTGAGCATCATTGTTCTGGTCTGCAATGTTTTCATGGCTtacaaat
tgaaaaatatgttgAAATCAGCCAATGAGAAGTGTGTTTTGCAAGAAGCA
CTCCATGCTCACATTGATTATTGCAAAATCTGGAATCAGAAGATAAAGTA
TCTTCTTTGGGGAGCGGCTGCTGGTCTTTTAAACGCTTTCAGTACCAAAA
TATGCTCTTGCTTTGGAATTGCTATGATGCAACAAAAATCAATGGTAAGC
AGATGATGCTCTGCACCCCTgtctaatttttttaatgtttcaaatAATGA
TCAAATTTTGATCGCATTCCGGTGGAAAATGtcgaaattttccaattttt
gcgacccttagtgggaccaTGAAGGTggaactgaaatttgattttatgaA
TTTTCCAGCACTTACTAGTAGTGGGACACTTTCAAAGTCCAAAAGAGGTA
CCCTAAAGGGCCACACATATTTGCTTAAGTACCCCTCCTCCAGGGTTTCT
TCatttaaaatattaaatatatgtAGTTAAATATAATTGTacttttattt
ttcaggttGAAGAGGAGCAGAAAACTCGAGAGCTAGAAATGgtctaaaat
acaaaattttgaaatagaacTAAAAACAGACACTACATTCTCGTATTGTG
TGTATTCGGGTTGTCTATTGTACAACCTGAAGTTTTGCATTTTAAGGAAT
AtttagaaaagatttagaaattgATTATTTATGAATTGTAAATAGAGCTA
AGCatcaaacttttatttatttagtaAAAATTACCAAATTATATGAAGAA
GAACTGCGGTTTGATTTTGAAATGGTCGTTACGGCCGCTAGGAGAGAAAA
ATCTTTTCCGAATTCGAGTCATAAATTAATGAATCAAACTCCTGTGAAAG Run BLAST on NCBI transcript from alignment at scaffold_106:248547..250440- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046163 ID=TCONS_00046163|Name=TCONS_00046163|organism=Clytia hemisphaerica|type=transcript|length=1894bp|location=Sequence derived from alignment at scaffold_106:248547..250440- (Clytia hemisphaerica)
CAACACAAAGACACGAACAAGAAATTGTCGCTGACATCACACATCTTGAA
CATGACGAAGTCAACTTCACCAGCAAATAAAATGGAGGTCTCAAAACAAG
ACAATACTACTGACGGATTAAACAACATTACATCAGCCTTTGGATTTTTC
GCCCTGACACAATTGATCACAGGGCTTTGTTATGTATCCTATTATTCATA
CCACAGGAGTCTTTTTGAATCTCTTTTCAATGAAACTGGAATGAATATCT
TTGCTGTGGTCAATGGAATACTGGTAGGTTGACTGATAACTAGGAAGATT
TTTCTCAATTCCTATTTAAAGAAATTCTAGTTGACTATTTCTTTCTTTCA
AAAAGTTTTCTAATGTTCCTATGACGGAATTCATAAGTTTCTTTTTTACT
TTTTAGTTGTTGATCAATGGAGTATCGAACGCAGCGACAGCTTACCAGAA
CAAAAGAGCAAAAGCTATTGTAAGTATTTTGGGATCATACTAATGTCATA
TAAAAATTTATAGTTAGTGCTGTAGGGGTCATTGTTGATATTATAGAACC
GTAAAAGAGTACTTTTCAAAGGCCTTCGAAGGGTCTAGGAGCAAGTACTG
AGAGAAGTTTTTAACCCGTTTGTAGGCGCAGGAGTAGCTTCCAGTCTTTT
TTCTCGTTTCTTGACAATGACAAAAGATATAAGATCATTTTAAGAAACCT
CAAATAAATTTTCTTTATTCTTTAGTTTGTTTTCTCGCTTGTTTTGAGCA
TCATTGTTCTGGTCTGCAATGTTTTCATGGCTTACAAATTGAAAAATATG
TTGAAATCAGCCAATGAGAAGTGTGTTTTGCAAGAAGGTAAGTCACGTGA
GAAAATGCTTACATCTCTTCGGTTTATTTCGCTATAACAAACTATTTCAT
GGATGCGCATGGAGCCTAGTGAGAAGATTCATAAATTCTTTCCTGCACTA
TCTTGTGAACTTAGCTTTTTCTGACCCTTTACTTTTACAGTTCTTTCTCG
ACCCTCTAAAAAATCAATCCCCCAGAACAAATTTTTTCGCACAAATTAAT
TTGACTTTCAATAAAACTAAAATCCTTATTCTTCTGATTCAGCACTCCAT
GCTCACATTGATTATTGCAAAATCTGGAATCAGAAGATAAAGTATCTTCT
TTGGGGAGCGGCTGCTGGTCTTTTAAACGCTTTCAGTACCAAAATATGCT
CTTGCTTTGGAATTGCTATGATGCAACAAAAATCAATGGTAAGCAGATGA
TGCTCTGCACCCCTGTCTAATTTTTTTAATGTTTCAAATAATGATCAAAT
TTTGATCGCATTCCGGTGGAAAATGTCGAAATTTTCCAATTTTTGCGACC
CTTAGTGGGACCATGAAGGTGGAACTGAAATTTGATTTTATGAATTTTCC
AGCACTTACTAGTAGTGGGACACTTTCAAAGTCCAAAAGAGGTACCCTAA
AGGGCCACACATATTTGCTTAAGTACCCCTCCTCCAGGGTTTCTTCATTT
AAAATATTAAATATATGTAGTTAAATATAATTGTACTTTTATTTTTCAGG
TTGAAGAGGAGCAGAAAACTCGAGAGCTAGAAATGGTCTAAAATACAAAA
TTTTGAAATAGAACTAAAAACAGACACTACATTCTCGTATTGTGTGTATT
CGGGTTGTCTATTGTACAACCTGAAGTTTTGCATTTTAAGGAATATTTAG
AAAAGATTTAGAAATTGATTATTTATGAATTGTAAATAGAGCTAAGCATC
AAACTTTTATTTATTTAGTAAAAATTACCAAATTATATGAAGAAGAACTG
CGGTTTGATTTTGAAATGGTCGTTACGGCCGCTAGGAGAGAAAAATCTTT
TCCGAATTCGAGTCATAAATTAATGAATCAAACTCCTGTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046163-exon-scaffold_106-1575043694:250168..250440 | TCONS_00046163-exon-scaffold_106-1575043694:250168..250440 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1575043694:249972..250034 | TCONS_00046163-exon-scaffold_106-1575043694:249972..250034 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1575043694:249604..249715 | TCONS_00046163-exon-scaffold_106-1575043694:249604..249715 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1575043694:248547..249348 | TCONS_00046163-exon-scaffold_106-1575043694:248547..249348 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1510915933:250168..250440 | TCONS_00046163-exon-scaffold_106-1510915933:250168..250440 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1510915933:249972..250034 | TCONS_00046163-exon-scaffold_106-1510915933:249972..250034 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1510915933:249604..249715 | TCONS_00046163-exon-scaffold_106-1510915933:249604..249715 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1510915933:248547..249348 | TCONS_00046163-exon-scaffold_106-1510915933:248547..249348 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1491911889:250168..250440 | TCONS_00046163-exon-scaffold_106-1491911889:250168..250440 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1491911889:249972..250034 | TCONS_00046163-exon-scaffold_106-1491911889:249972..250034 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1491911889:249604..249715 | TCONS_00046163-exon-scaffold_106-1491911889:249604..249715 | Clytia hemisphaerica | exon |
| TCONS_00046163-exon-scaffold_106-1491911889:248547..249348 | TCONS_00046163-exon-scaffold_106-1491911889:248547..249348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:248547..250440 - |
Blast
The following BLAST results are available for this feature:
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