TCONS_00004499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004499
Unique NameTCONS_00004499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004499 ID=TCONS_00004499|Name=TCONS_00004499|organism=Clytia hemisphaerica|type=transcript|length=1886bp
GTAAGCTGAGACATATCCATGAATTTAAAAAGAAGGCGTTGCGTTTCAAC
ATGGACAAAAACGAAACGTTCGAAATCGTTCAACCGGAACTGACCAGCTC
CTCACTAACTGAAGAAAGTTCTTCTGAAAGCGAAGATGAGTTCTCGTGTA
CCAAAGACACCAATAACAACAAAACAACACCAAAGAGAGTCATGTTTGCA
AATGTTATGGATGCGGGAGACCTGGTAGcgagtgatgacgtcatagaaaa
gaACGAAGATTTAAAGGAAGAGGAAGTAAAACAGAACGGGTTCAGTGCAG
ATGAAAAGGATAATTTGAAAGATGAGATAGCTGAGTTGGCGGCAGAAAAA
CGTGATTTGTTGTCGGAATTGAAAACGTTGCGGAAACGACACGACAAAGA
GATGGCGAAGTTACGAGAGGAATATCAATTACGAAGGGAAGATTATTACA
CGGAACTCGATGAAGTGCAGTACGAAATCAACGAGAAAAGGAACGAATTG
CATTCAAAGAGTTCTTTGTCATCTTCAAATTCATTAACGAgaggaaatga
aaatgaaaatcttacTCCACTTCGTGATCGCGTTGATAATGAAAAAAAAA
AATTGGAAGCACAAGAAAGTGATGTGAAGAAACGACAAGCAGAAGTCTTG
GAGCAAGAACAAGAGTTGAAAGAATACCAACGTTACCTTGACCGAAGACA
CAAATCATTaaacgaaaaagaagaagatctTTGTTTACTGCAAGATgagT
TAGAAGAACTGGATGACATTTTAAAAGCAAAGCGTAAAGAATTAGGTGCA
AAAAAAGAACAACTCGAAATTCAACCATGTACACATGACGAAAAACAAAT
CGAAAAAACGCGGAACGATCTACATGAATCGTTGAAACGAGAATCAGAAA
TTCGTGACCGTTTACATAGCaccaaagaagaaaatgaaaaacatttggaA
AAGTTAAATGAACTTGACGAAGAAAACCATCGTCTGCATTCCAAAATCAA
ACATCTAGAAACGCAGTTAACCATAAACTTAAAATCATCCATGAATTGTT
GTCTACCGGATAAAAGAAATAGTTTGAGAGCACGCTCGTCCACTATACCG
GTAGACGAAAAAACGGGTGAGCTAAAAAGCCCGACAACTTCGCCTAGAGG
TGGTGTTCCACAATCTCCAACGCGGAGTTTACCGTTAACAAATGGCTCTC
CTTCGCATAAAATTACGGAACCGAAGACGCGTGATgagaattcgaacgtt
ttgattGGCGATCCGTCAGATGATGAAATACGCACGGACAGTAAAAGTGT
TCAAAGCAAAACATGTGCTCTGATGTAGTTTCAGTCGCAAAGATTTGTAT
TCAGTCGCAAAGATCTGTTTTTGGCTGGAAACAATGATAAGTTGGTTTGT
GCTCTGAAAAATATTGACTGAACTTTTCGGAAGTGATCTAGCTGATTGAT
CTCTTTACCGGCAAACAGAATTCTCACCATTCAAGAGAGTTTGCTGTAAG
AGAAAATCAGCGAAAATCCTTGGACGAGTCCACGGGAATTTTACGGATAC
TAGCTTGTCAATAGTGAAATTACTTTTATCATTgaagaattattttcttt
tttttatttgcacACGCACATGTTTTATACCGCATTTTCTTTCACAACGA
ACCCTTCACAGTGGGAGGCAATAATCCCAACCCAGCCCAATCCTTATATC
AATCACTGATAGGTCTTTTCATGTTCGATGacgcctcgttttgaaaccgt
TACTAAGCTGATTAGATAGAGGAAACTTCTTAGCAATTCCTCTGGGAATC
AGTTATCATGGCAgcattattttgaaaacgaggcaagcGTTGCTCCtgac
gtaatttataaaaaggtctatGTATGGatatttttc
Run BLAST on NCBI

transcript from alignment at sc0000045:443500..449893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004499 ID=TCONS_00004499|Name=TCONS_00004499|organism=Clytia hemisphaerica|type=transcript|length=6394bp|location=Sequence derived from alignment at sc0000045:443500..449893+ (Clytia hemisphaerica)
GTAAGCTGAGACATATCCATGAATTTGTGAGTTGTCCTTTCAGTATGCGA
AATCATCCAATATTTTGCATGTTTGTGTGATTGTCGAAAATAAAATAGTG
TAAAATTGGAGAAATATTTACTCTTTATCACGAGACAAAGATTTCAGTGA
TTTCTTGGTTGTTTGGGCGAGCCTCGATTTGAGTTAGAATTCTTTAAAGC
CGAGCTCCATTTTCGCGcaaaatgggcgacagtttttttctcaacctttt
tttgcctgaagaaaagattacgtcataaaaaagtttcgcgcgaacaacaA
AAAGTTGagggaagttctactttttcatccgttacgtcaattttgaccaa
tggaattgcttcatttttcaaccgaccaatgaccttacaaaaacgtcaaa
aagttttaactCATGTCGCGTGAAAGTAGAGACTGGCCTTTAGACCATTT
GACAAGTTCTGGCTAGTTTACTTTACTTTACTAGATACTAACGGTTGTGA
CGTTTTAACTGTGTAAATAGGAATTACTTGAATAATCAGCCTCGCGGAAT
GCATGCTACAAACCCATCAATATATGCTGTCATTCCTTTTTATAGAAAAA
GAAGGCGTTGCGTTTCAACATGGACAAAAACGAAACGTTCGAAATCGTTC
AACCGGAACTGACCAGCTCCTCACTAACTGAAGAAAGTTCTTCTGAAAGC
GAAGATGAGTTCTCGTGTACCAAAGACACCAATAACAACAAAACAACACC
AAAGAGAGTCATGTTTGCAAATGTTATGGATGCGGGAGACCTGGTAGcga
gtgatgacgtcatagaaaagaACGAAGATTTAAAGGAAGAGGAAGTAAAA
CAGAACGGGTTCAGTGCAGATGAAAAGGTTTGTCTTTCAAGGATGTGGAC
TCAGAATAATGAAGACGGTAGCCCCCCCCCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgtgccccccccccccccctttgttGGTGGGGGTTTCCGAG
AGTACAAGACACTGGAATACCAGCTATTCTTTCGCAACAGAGGTTGAGTT
ACTGGACATCCAAGATTTCAACATACATAATGTTTACTGTCTTAATTTTT
AGGATAATTTGAAAGATGAGATAGCTGAGTTGGCGGCAGAAAAACGTGAT
TTGTTGTCGGAATTGAAAACGTTGCGGAAACGACACGACAAAGAGGTAAA
TCACAAACGTCTTACGCAAACTGATTGGTGGTTTGTAAGCCAATGGTAGA
CGAGTGATTAACATATTGATTCTTTGAATATTTCACTTCTACTTGGTCTA
ATAACTCTGCTATAGCCTCAGCTTCCCAACGACTTTTTACAAGTGCAATA
GCAATCATCTAACCCTTCAAACCCCAAATGACGTGTATATACGTTAAAAA
CGAGCCAATACTCTGGGTCCCAGACTTAATGCTATAGCTCCTGCCCACTC
AATTTGAAAGGGTATCAATGACTGCttttaaaagactttgaaaTTACATT
TCTTATGATACTCCTCAGGCTTAGTTTCTATGCCAAATTGAAGTTTGCTG
AGAGCTTAAGATGTTAAGATTTTCATTGCAAATAATTCCATCATTCATTG
TTTTCACAGATGGCGAAGTTACGAGAGGAATATCAATTACGAAGGGAAGA
TTATTACACGGAACTCGATGAAGTGCAGTACGAAATCAACGAGAAAAGGT
TAAAAAGACAAactattattttgttatttgcTACCTGTTAATGAGAGTTG
GCTCTTATTttaaactcagagtttcatgtcGCCTCTAAGCCAATCTTCAG
TGAACTCAAATCTCATTTGAGCTTGAAATAAGAACTTAGTTATAATACTA
TTGCTCTATTAAATTATTGAGCACTCTAAgaggagaaaataaaaatcttc
tAAGTATAATCCAATATTGAATGCATAGAAGGTTGTAAGATATTTTGCAC
TTAGTGTTTACATCTTACCAAGCCCGCTTTGATATTCTATTGTTTCAGTT
TTCTTTCGAATTTGAACTCAGGTAAAATACGTAAAGGCTCATGCCTGGAA
CCTTGGAACTTAACAATCCTTGTAAGagtctaaaaaatttaaattttttg
ctcCTGAaacatcgaaatttggtcaaatcaGTCCCAATTAGGGtcgtaaa
atttacaaaattttcctcctttttagtcTTACTAAGTGTCCAAGGGTTGA
AAGCCGAGCGGCACCACCTTCCCCCGTCATCCTGTAAACCTAGTACCCCA
GGTTCATGGACATCAAGAACTTGAATATTTCTCTTGTTTCCAGGAACGAA
TTGCATTCAAAGAGTTCTTTGTCATCTTCAAATTCATTAACGAgaggaaa
tgaaaatgaaaatcttacTCCACTTCGTGATCGCGTTGATAATGAAAAAG
TGAGTGACCACGTGGTATTTATTTCCTTGTAAAACCAAAATGATAATATT
AACCTCTTTAATCTTAACAAATCATCTGGCTGTTGGTTATACATCAAAAT
AATGTTCATACTTAGAAAATAAAGTGAGAAACTGTTTACCCAATACTCAA
AAAGTTTCTAacgatttttcattttcaaagtaaTATTCGATGCTCTAGAC
CTGAATTTTTAGCTCTTTTTAGCTAcattaatatctttttttattgataa
ttcACCACACCCCTGCTATCTTCCCTCGATAACTTtacgttccgcaaccc
cttctCTTCCGTGATTGTTGAAATAAAAACCTTGACCAACCAGCGTAAAA
CTACAACAAAACGGTTCACCAACAAAACATACATACATAAAGATAGAACT
GATAAACCTCACCTTGATCGTTTCAGAAAAAATTGGAAGCACAAGAAAGT
GATGTGAAGAAACGACAAGCAGAAGTCTTGGAGCAAGAACAAGAGGTATC
CATTTTTCATTTGACGGAATTATGACGTAAAATTTCTAGGTCCTATTTCG
GGgtgcgaaaatgaaaaaaaacggcgctacatcacaaGTATTCAAGGAAA
AGATAATCTAGCGCTTTGGACGcattacaccgctattgagtagtgctttT
ATTAGATTTTGGTTAGCTGGGATTTATTTAATGCTCGGTTTTTTCAGGTT
CAATTATTCTCCCTTTCAGTTGAAAGAATACCAACGTTACCTTGACCGAA
GACACAAATCATTaaacgaaaaagaagaagatctTTGTTTACTGCAAGAT
GTATGCTATGAATTTCCTTCGGCGGTCCAAGTCTTAATCTGAATGTGTGT
TAGGGGATCACTCCTTAAAACTTGCACATAATATTCATTTTTATATGGAC
TAAAGATAAAACTTTAAACACCTTCCTCAGATCCCAAATCACTTCTCCAA
AcagcctttttcttttgtttttgttctcaGCTAGTACGATTTAcataatt
ttgaattaaaatgatTGGTCTCCTGTTTTCTTAGGTATTTTTTCCGTTTT
TACAGCTGTTATGTTTCTAATAGATAGGGGGGATCTGGGATAAGTTtagg
gttaaaaattatttctaaaacTATTAATTACCAGTGGTTTGGCATAAGTA
TGTCCATAGTCAtaataaaaacactggtctggaaggcttttgcctctttt
tattgttaaaagatggagcttacgtaccaaaatcgaaattgtttgtaaca
aaagacaattgaacaaaaagctaaaacaatacattgccagaccggttttt
tttataatggctATGGTATGTCCCGAATGAAAATTGCCATATTGCTTGCT
CACTAGATATTTAtcatcttttttcattttttcaggagTTAGAAGAACTG
GATGACATTTTAAAAGCAAAGCGTAAAGAATTAGGTGCAAAAAAAGAACA
ACTCGAAATTCAACCGTAAGAtcaactttctgattttttttatcacaaGT
AATTGTATGTGTAATAAATTACACCGGAAAGCACAAGAAACCATAAATTG
TATCtctcaaaatatcagaaattccTCATAATTCTCAACTAATCAGCTAC
GGATACGTTTGATATgttaacccagctggcacacaacgttgtttcaacgt
tcatctgacgttatatggatgttgtgaacgttagataaacgttgaaacaa
cgttgtgtgccagctgggaaaggaCATCATTTAACGCATCTCCTACTTGC
TGACACAGCATTTTAAACCAAGAAACTTGTTTAAACATAAGAAAGAAGTA
CTTTCTCCCCTTTCGGCGCCGTGCGAGGaaagattttgagaaattatttt
gtttttttttctgctttgtcagcatacaCCTCCTTTCTATgtcaaaactt
ttttaacggTTACAGCATAAATATTCATTCATTCTAGATGTACACATGAC
GAAAAACAAATCGAAAAAACGCGGAACGATCTACATGAATCGTTGAAACG
AGAATCAGAAATTCGTGACCGTTTACATAGCaccaaagaagaaaatgaaa
aacatttggaAAAGGTAAGCGTGCTCCGTTTTTTATTCGGGCGGGGTTAA
AAACAGGGTGGTATGGATCGCGGCAATCGAAAAAATCAGGCGATGTATGT
TTTTTTAGTGCCGCGACACCCTGTTTTATGACCCCACCCGAATAAAAACC
TAAGCTGAGATTGTCAATTTACGGTGTGATATCATTTAATGGGTTGAAGG
GTCGTTGTGTCTCACTGATTTGCCGTCAAATAATTTACGTGAAATAAGAA
AAGACCGATGGAGATGGTGGGGAATCTCTTACATTTCATAATTAGGGTTT
CAGTCTAGGGAGTCAGCCTCAGAATGATCATTTTATCCTAGGGGATTTCA
TTGCTTTTTTCTTATAGGGGGAAATTTCAGGTGACGATTTTTTATCTGCA
TTCAGATAGGATCCGGCTCACTTAAGGGATATCTATTATTTGGGCAAGGT
AAATAAACAGGGTGGTATGGGTTGCTTATTCATAACGGAATCtggttttt
gtaattttgttgaACTAAATACACAAAAAGAATAATAAGATCTTCTCATT
TTCATACCTAAGAGATGGGCTTTTCAAGAAACAGTCCGTTCCTTCTGTCG
AGGATATCGGACGTCCAGGGGGTTCAATACtatctggatatccagggggt
aggACCTTATAAAAgggagaggatatccagggggtacaaTACAAAATGCC
TGGATATCCTGGGGGCACAGGACAAAATGCTTGGGTATCCTCAACCCTCC
TACCCACTCTATCTATCCACTACCACTTGAACATTCAaggggtgattttt
tttcaggtcGGATATCCAGTGAGCTGTTGAACTCGAAAAATGCATATCTA
CAACAGGGGGGAGGGGTACGGAAAATTTCTGATAAAGCCCTATACTTATA
TAAAACTTAATAATTTATTTCAACTACATaacgaaacttttttataatcC
TCCCGATATAGTTAAATGAACTTGACGAAGAAAACCATCGTCTGCATTCC
AAAATCAAACATCTAGAAACGCAGTTAACCATAAACTTAAAATCATCCAT
GAATTGTTGTCTACCGGATAAAAGAAATAGTTTGAGAGCACGCTCGTCCA
CTATACCGGTAGACGAAAAAACGGGTGAGCTAAAAAGCCCGACAACTTCG
CCTAGAGGTGGTGTTCCACAATCTCCAACGCGGAGTTTACCGTTAACAAA
TGGCTCTCCTTCGCATAAAATTACGGAACCGAAGACGCGTGATgagaatt
cgaacgttttgattGGCGATCCGTCAGATGATGAAATACGCACGGACAGT
AAAAGTGTTCAAAGCAAAACATGTGCTCTGATGTAGTTTCAGTCGCAAAG
ATTTGTATTCAGTCGCAAAGATCTGTTTTTGGCTGGAAACAATGATAAGT
TGGTTTGTGCTCTGAAAAATATTGACTGAACTTTTCGGAAGTGATCTAGC
TGATTGATCTCTTTACCGGCAAACAGAATTCTCACCATTCAAGAGAGTTT
GCTGTAAGAGAAAATCAGCGAAAATCCTTGGACGAGTCCACGGGAATTTT
ACGGATACTAGCTTGTCAATAGTGAAATTACTTTTATCATTgaagaatta
ttttcttttttttatttgcacACGCACATGTTTTATACCGCATTTTCTTT
CACAACGAACCCTTCACAGTGGGAGGCAATAATCCCAACCCAGCCCAATC
CTTATATCAATCACTGATAGGTCTTTTCATGTTCGATGacgcctcgtttt
gaaaccgtTACTAAGCTGATTAGATAGAGGAAACTTCTTAGCAATTCCTC
TGGGAATCAGTTATCATGGCAgcattattttgaaaacgaggcaagcGTTG
CTCCtgacgtaatttataaaaaggtctatGTATGGatatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002532XLOC_002532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004499-exon-sc0000045-1491911889:443500..443525TCONS_00004499-exon-sc0000045-1491911889:443500..443525Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:443500..443525TCONS_00004499-exon-sc0000045-1510915933:443500..443525Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:443500..443525TCONS_00004499-exon-sc0000045-1575043694:443500..443525Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:444095..444376TCONS_00004499-exon-sc0000045-1491911889:444095..444376Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:444095..444376TCONS_00004499-exon-sc0000045-1510915933:444095..444376Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:444095..444376TCONS_00004499-exon-sc0000045-1575043694:444095..444376Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:444652..444744TCONS_00004499-exon-sc0000045-1491911889:444652..444744Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:444652..444744TCONS_00004499-exon-sc0000045-1510915933:444652..444744Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:444652..444744TCONS_00004499-exon-sc0000045-1575043694:444652..444744Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:445159..445247TCONS_00004499-exon-sc0000045-1491911889:445159..445247Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:445159..445247TCONS_00004499-exon-sc0000045-1510915933:445159..445247Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:445159..445247TCONS_00004499-exon-sc0000045-1575043694:445159..445247Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:445843..445948TCONS_00004499-exon-sc0000045-1491911889:445843..445948Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:445843..445948TCONS_00004499-exon-sc0000045-1510915933:445843..445948Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:445843..445948TCONS_00004499-exon-sc0000045-1575043694:445843..445948Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:446376..446444TCONS_00004499-exon-sc0000045-1491911889:446376..446444Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:446376..446444TCONS_00004499-exon-sc0000045-1510915933:446376..446444Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:446376..446444TCONS_00004499-exon-sc0000045-1575043694:446376..446444Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:446669..446749TCONS_00004499-exon-sc0000045-1491911889:446669..446749Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:446669..446749TCONS_00004499-exon-sc0000045-1510915933:446669..446749Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:446669..446749TCONS_00004499-exon-sc0000045-1575043694:446669..446749Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:447335..447414TCONS_00004499-exon-sc0000045-1491911889:447335..447414Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:447335..447414TCONS_00004499-exon-sc0000045-1510915933:447335..447414Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:447335..447414TCONS_00004499-exon-sc0000045-1575043694:447335..447414Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:447887..448013TCONS_00004499-exon-sc0000045-1491911889:447887..448013Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:447887..448013TCONS_00004499-exon-sc0000045-1510915933:447887..448013Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:447887..448013TCONS_00004499-exon-sc0000045-1575043694:447887..448013Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1491911889:448961..449893TCONS_00004499-exon-sc0000045-1491911889:448961..449893Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1510915933:448961..449893TCONS_00004499-exon-sc0000045-1510915933:448961..449893Clytia hemisphaericaexon
TCONS_00004499-exon-sc0000045-1575043694:448961..449893TCONS_00004499-exon-sc0000045-1575043694:448961..449893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:443500..449893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.279243	0	4.26815	2.21073	5.61382	5.67318	2.61951	7.06617	5.93412	2.42002	0	0	0.817263	0.0343702	0	2.48688	0.994297	0	0.935671	1.40082	0.835245	0.769226	1.12893	5.70537	2.63151	0.00061936	0.0131473	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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