TCONS_00004544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004544
Unique NameTCONS_00004544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004544 ID=TCONS_00004544|Name=TCONS_00004544|organism=Clytia hemisphaerica|type=transcript|length=2139bp
AAAAAAGTATTGAGCATTCTTcgtaaatttttcattttcttagtATGCGT
ATCTGAATCGAAAAACAGTTAGAATTGACAGTTACTTTTTTTGATCAGGA
TAGGAAGTATTGGGAGCTACCTCCTAGAAACAGAATTTACAAACATTTTT
GGGTCACCTATTGATGTGCTGCACAGATAATATaTCAGCATGGCAGTAAA
ACATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATTGCTCTCATGG
GATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAACAAGCCACCA
AGATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACAAGATCTTCGG
CCCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCCGGTATCATAC
TTAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTACCGTGTTTCT
AGTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGGAGACTGCAGA
ATCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCACCAAACTTCA
CCACCACAACGTCTATGCAGATTACTGAACCAGTCACAGTGTCAAACGAT
GGTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGAAACAATATAA
CTCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACGTACGAAGAAG
TGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAAATTACAAGAC
CACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACGTCAGTGATTT
TGTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAGGCGGATgata
cggaggagagtgaagtGTATGAAATTCAAAATCTCATTCATGGCAAAAAT
TGCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTAAACCGTCTTT
CAAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGACACTTTGAGGA
CTTTTAAAGGAACCATACTGGTGCAGGCGAGtttaaaaaacaatgaaaag
taTTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTATGATGTTTTAT
CAGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATTTTTGATCCGT
ACACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCGACATGGACGT
GATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGtcctttttttgtaa
atttatttaGTGAATGAATTTTCTTACTCTTGTTTATATGATTAAATCTT
TTAAAGAAGGAAttgttaaaatattgaaatatttacaCGTAAAATTACAT
ACACCTGCTTAAGATaagttacaaaaatattaaaaaacatcAAGAAAAGG
TTACTTTCTTCCAAACATATGTATAATATGTAGAACACGGTAAGCCATAA
CAAAATTTCGGCagcaagtgattttttttcacttttcgcCGACGAATCTC
TACTGACGAGGAAAGTACAAATTttggatttaaaaattttgaatttttat
atatctttacgactctctctctctctctctctctggaAAATATCAACCCT
CTATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCTTTTGTAAGCT
GAAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTCTTTGTCTAAG
ATTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTCAAGATAAGGT
ACCACCtgataaattatttttactgtTATAACTTCGGGATAATCATCTCA
AAAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCATCCTTTTATC
GGATGGTATGGAATCGTTATTCCgcaattttccagaaaaatctAGTCCGA
AGAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCATGTGATTCGA
ACGGTCTACTTGTTACCATATAGCCTCTCTCTCTatgattttttaatcat
ttctgACTTGCGTTATTCCGAATACACCATCAATAATTCCATCAAGAGTT
TCCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAAAACCAATTTT
AGTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT
Run BLAST on NCBI

transcript from alignment at sc0000045:172994..177138-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004544 ID=TCONS_00004544|Name=TCONS_00004544|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0000045:172994..177138- (Clytia hemisphaerica)
AAAAAAGTATTGAGCATTCTTCGTAAATTTTTCATTTTCTTAGTATGCGT
ATCTGAATCGAAAAACAGTTAGAATTGACAGTTACTTTTTTTGATCAGGA
TAGGAAGTATTGGGAGCTACCTCCTAGAAACAGAATTTACAAACATTTTT
GGGTCACCTATTGATGTGCTGCACAGATAATATGTAAGTACGTTTATATT
TAAACTCACCTGCTAATTTTGACCATTTCTTCTAAAAGATTAGATACCGG
TAGACTTCTTTGAAAGTTTTCTTCCGAGGATAGATAAGATTAGGTGTTGG
AGTATTTTTATCAGTTTTACCCTCAAGATGGCAATCGATTCTTGTTTTGT
AGCTTACAATCTACCGCCAAAGAAACAGGTAAAAAGATTTCTGTTGCTAT
CTTCCTGGGTGTTGATTTTAGTGAATAATGGTAGAATATCTTTGTGTAAT
TTTGAATACACCTTTTCGACCGTAGTCACTCAGCCAGGCGCGTGCCACCT
ACAATCAGGGACAAAATACTTGGCACAAAAGGTAAATTCACCGGGGTGTT
TTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTCGAAGGGTAG
AGTTTTAACCCTGAGTTTTAACGCTAGACTTAGGACCTTAGGATCTGAGG
ATGTGAGGATCAAAAAGTTTAAAAATGGTCCAGTAGGGCTTGAAATATAG
CCTAGAAACCAATAAATCCCTCCCAGATCGAAATAATCGATGAAATCAAG
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAATCAAGTTGA
GGGCCTGAAATTGACATTCTCGCTCGAACTTCAATTTTCGAAAAATGGTA
AATTAGCCAAAAGTGCAAATATATTATGGCACGGATTGTAATTATCTAAA
TGTCCCACAAAACTCGACCCAATCCTTTTTTGACACATTTTTCTATTGCC
TATAGGTGCGAAAAAAGGACTGGGACGGATTTAGTGGGATAAAGCGGGAA
AAAAATGCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAGATGTATTTAC
ACAACATCGTGATCTGCTTAACTTTCCGAAAGAGGAGCCTATCGGGTCGC
TTTCGACTTCGGTCACAGACTTAACTTTCCAACTAATATTTCAATTGTAG
CACAAAATCAGTGCTTTTTTGGAAAGTTAAGTGAGATTCTGGACAAGTCC
GGTTGATTTACTACGGTAATCAAATTAATTTTGCATTTATAAAAGGTTTG
AACATCAGGATATCGCCGAGGTTCTAGAATAATTTCATGTAAATGCTTCA
CGCCCTTTGTTTCCAAAGGTTTGTAGCCACAGATATGTGTAAAGCCCGAA
GGGCTAGATTTGCGGCTTTTATCGAAAAGTGAAGCCTAGGTTTGGAAGGA
TTTCCTACCAAAGTCACGTGACTAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCAC
GAAATTTAAAAAGTCAAATTTTTGCTTCACTTTTTTTTGCTGGAGAAAGC
TTAAAGTTGCCTATCTAGCCCTTCGGGCTTAGATATCTGTGTTTGTAGCT
GTCTTATTCTGACTAGCCACCGGTATCATTACAGTAATGGATCGGGCTAG
TTTATTCCTCGATTCTATTCGCATGCACTTTACCATTACTTTACCATTGA
ACTAGTGATGTAAAAATACATTTTCTTTTATTTTTACAGATCAGCATGGC
AGTAAAACATTCGTTACTCATACTCATTGTCTCTGGTGGATTAATTGCTC
TCATGGGATTTGTTTTGACAATGTTTGGGTTTGCATCTTCATGTAACAAG
CCACCAAGATGTCTGAAGTCTGAAAACTCACGAATCCTTTCCTACAAGAT
CTTCGGCCCTATGTTATTTTTCTTCGGCCTGGCCGCTTCTGGTGCCGGTA
TCATACTTAAATGGCGACTGAAACCAAAACATCTAAGACTTGAGTACCGT
GTTTCTAGTATCGAGGGAACTAACTTCACCGGTGACACAACCCTGGAGAC
TGCAGAATCCCCTGTGAATGTAACACCAACCGAAGTAACATTCTCACCAA
ACTTCACCACCACAACGTCTATGCAGATTACTGAACCAGTCACAGTGTCA
AACGATGGTACGGATCACGCAGTTGGAGAGCCATCCACGGTGGAGAAACA
ATATAACTCTCCTCCATGGGTGCCTTCTATGTTAGCTCCGCCAACGTACG
AAGAAGTGTGTAGTAAGCCGGCTGAAAAGGAGTGTAGTAGCGCAAAATTA
CAAGACCACTCCGAGCAGGAGGGTGTAGATGTGACTGATGCTGACGTCAG
TGATTTTGTGATCAATGAAGATGAATTGGAAGATGAAGTTTTTGAGGCGG
ATGATACGGAGGAGAGTGAAGTGTATGAAATTCAAAATCTCATTCATGGC
AAAAATTGCTCAGAAGCTTGAGATCATTCATTGATTTTTCCTGTTAAACC
GTCTTTCAAGACGGGGTTTTAACATTTTTCGACGGCTTTTAACGACACTT
TGAGGACTTTTAAAGGAACCATACTGGTGCAGGCGAGTTTAAAAAACAAT
GAAAAGTATTGACATACTGTTTGATGATTTGTTGCGGAGGAAGTATGATG
TTTTATCAGTTAACAGTAGAATTTTGGAAGAGGTGGGCGGATAATTTTTG
ATCCGTACACCCCAGTAATTGCTACAACAATGTTAGCTAGAGCGCGACAT
GGACGTGATTTATGCGGCTGGGCGAAACAAGAAACTTAAAAGTCCTTTTT
TTGTAAATTTATTTAGTGAATGAATTTTCTTACTCTTGTTTATATGATTA
AATCTTTTAAAGAAGGAATTGTTAAAATATTGAAATATTTACACGTAAAA
TTACATACACCTGCTTAAGATAAGTTACAAAAATATTAAAAAACATCAAG
AAAAGGTTACTTTCTTCCAAACATATGTATAATATGTAGAACACGGTAAG
CCATAACAAAATTTCGGCAGCAAGTGATTTTTTTTCACTTTTCGCCGACG
AATCTCTACTGACGAGGAAAGTACAAATTTTGGATTTAAAAATTTTGAAT
TTTTATATATCTTTACGACTCTCTCTCTCTCTCTCTCTCTGGAAAATATC
AACCCTCTATTGATAGTAGTTCAGAATGTTCGAGGGATTGTTGTCTTTTG
TAAGCTGAAGTTATTGCCATCTCTGCGAAGCAACAAAGTAAACTTCTTTG
TCTAAGATTATCAGCATTCCATACAAAGTTATATCCAGTCTTTTTCAAGA
TAAGGTACCACCTGATAAATTATTTTTACTGTTATAACTTCGGGATAATC
ATCTCAAAAGCTGCAACATATATGACCTTTTGGGTTTTTGGCATCATCCT
TTTATCGGATGGTATGGAATCGTTATTCCGCAATTTTCCAGAAAAATCTA
GTCCGAAGAAACCCATCTAATCTTTAAATTTCATGACCGTAATTCATGTG
ATTCGAACGGTCTACTTGTTACCATATAGCCTCTCTCTCTATGATTTTTT
AATCATTTCTGACTTGCGTTATTCCGAATACACCATCAATAATTCCATCA
AGAGTTTCCAAAGCTGACGGTTCAATATTTTCTGGAGGTAACAAAAAACC
AATTTTAGTATTTCGATTTCTCAATTCAATGATGTAGGAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002556XLOC_002556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004544-exon-sc0000045-1575043694:176956..177138TCONS_00004544-exon-sc0000045-1575043694:176956..177138Clytia hemisphaericaexon
TCONS_00004544-exon-sc0000045-1575043694:172994..174949TCONS_00004544-exon-sc0000045-1575043694:172994..174949Clytia hemisphaericaexon
TCONS_00004544-exon-sc0000045-1510915933:176956..177138TCONS_00004544-exon-sc0000045-1510915933:176956..177138Clytia hemisphaericaexon
TCONS_00004544-exon-sc0000045-1510915933:172994..174949TCONS_00004544-exon-sc0000045-1510915933:172994..174949Clytia hemisphaericaexon
TCONS_00004544-exon-sc0000045-1491911889:176956..177138TCONS_00004544-exon-sc0000045-1491911889:176956..177138Clytia hemisphaericaexon
TCONS_00004544-exon-sc0000045-1491911889:172994..174949TCONS_00004544-exon-sc0000045-1491911889:172994..174949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:172994..177138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0377605	0	0	0	0	0	0	0.82099	0.429645	0	0.201478	2.15673	2.23108	0	0	0.41836	0.662552	4.24034	5.72543	3.02633	2.25714	0.805502	1.16578	0.377137	2.34285	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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