TCONS_00045496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045496
Unique NameTCONS_00045496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045496 ID=TCONS_00045496|Name=TCONS_00045496|organism=Clytia hemisphaerica|type=transcript|length=615bp
GGTGACGAACGACGACGTTTCTTACGAGTTTTAGGATCATCGTCGTCATC
GCTGCTATCTGAAGACGAATCTGAGCTATCTGACGACTCCTCGTCACGCT
TCTTTCGTTTGTTGTCGTCGACATCGTCGTAATCGGGCACAAGGCTTTTC
GTCTTCTTTTCTGTCCCTCCCGACNTTCGTTTGTTGTCGTCGACATCGTC
GTAATCGGGCACCAGGCTTTTCGTCTTCTTTTCTGTCCCTCCCGACGAAG
TGTTGGATTTTAGAGCAGCCAATTCTTTCTGTAATTCTTTCTCACGTTCT
GACAGCTTTGCCATTTGCCTTTTCTTCTCGTCTGACATCGATTTGTTTGA
GGCAGCAGCGCTTTTCTCCTTCTTTTCGTCCATGATGGCAGACATCAGTT
TATCTCTCAATACTGGATCCAAACTGCTCAACTCAGGGCCTAACCTCTTC
AACAGTCTCTCACGTTCGAGTTGAATACGTAGATCAGCTTCTTCCTGAGA
TTCTCCTTGTTTAGGTTTGTTAGCATCGATGTTTGATTTGTCTTGTGTCT
TTCCTTTGTTGTTTTCATCATCAGATTTTGGTTGTGGCGTAAGAACAACA
GTGCTGTCAATGTCT
Run BLAST on NCBI

protein sequence of TCONS_00045496-protein

>TCONS_00045496-protein ID=TCONS_00045496-protein|Name=TCONS_00045496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
DIDSTVVLTPQPKSDDENNKGKTQDKSNIDANKPKQGESQEEADLRIQLE
RERLLKRLGPELSSLDPVLRDKLMSAIMDEKKEKSAAASNKSMSDEKKRQ
MAKLSEREKELQKELAALKSNTSSGGTEKKTKSLVPDYDDVDDNKRXSGG
TEKKTKSLVPDYDDVDDNKRKKRDEESSDSSDSSSDSSDDDDDPKTRKKR
RRSS
Run BLAST on NCBI

transcript from alignment at sc0008085:1..615

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045496 ID=TCONS_00045496|Name=TCONS_00045496|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0008085:1..615 (Clytia hemisphaerica)
AGACATTGACAGCACTGTTGTTCTTACGCCACAACCAAAATCTGATGATG
AAAACAACAAAGGAAAGACACAAGACAAATCAAACATCGATGCTAACAAA
CCTAAACAAGGAGAATCTCAGGAAGAAGCTGATCTACGTATTCAACTCGA
ACGTGAGAGACTGTTGAAGAGGTTAGGCCCTGAGTTGAGCAGTTTGGATC
CAGTATTGAGAGATAAACTGATGTCTGCCATCATGGACGAAAAGAAGGAG
AAAAGCGCTGCTGCCTCAAACAAATCGATGTCAGACGAGAAGAAAAGGCA
AATGGCAAAGCTGTCAGAACGTGAGAAAGAATTACAGAAAGAATTGGCTG
CTCTAAAATCCAACACTTCGTCGGGAGGGACAGAAAAGAAGACGAAAAGC
CTGGTGCCCGATTACGACGATGTCGACGACAACAAACGAANGTCGGGAGG
GACAGAAAAGAAGACGAAAAGCCTTGTGCCCGATTACGACGATGTCGACG
ACAACAAACGAAAGAAGCGTGACGAGGAGTCGTCAGATAGCTCAGATTCG
TCTTCAGATAGCAGCGATGACGACGATGATCCTAAAACTCGTAAGAAACG
TCGTCGTTCGTCACC

Coding sequence (CDS) from alignment at sc0008085:1..615

>TCONS_00045496 ID=TCONS_00045496|Name=TCONS_00045496|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0008085:1..615 (Clytia hemisphaerica)
GACATTGACAGCACTGTTGTTCTTACGCCACAACCAAAATCTGATGATGA
AAACAACAAAGGAAAGACACAAGACAAATCAAACATCGATGCTAACAAAC
CTAAACAAGGAGAATCTCAGGAAGAAGCTGATCTACGTATTCAACTCGAA
CGTGAGAGACTGTTGAAGAGGTTAGGCCCTGAGTTGAGCAGTTTGGATCC
AGTATTGAGAGATAAACTGATGTCTGCCATCATGGACGAAAAGAAGGAGA
AAAGCGCTGCTGCCTCAAACAAATCGATGTCAGACGAGAAGAAAAGGCAA
ATGGCAAAGCTGTCAGAACGTGAGAAAGAATTACAGAAAGAATTGGCTGC
TCTAAAATCCAACACTTCGTCGGGAGGGACAGAAAAGAAGACGAAAAGCC
TGGTGCCCGATTACGACGATGTCGACGACAACAAACGAANGTCGGGAGGG
ACAGAAAAGAAGACGAAAAGCCTTGTGCCCGATTACGACGATGTCGACGA
CAACAAACGAAAGAAGCGTGACGAGGAGTCGTCAGATAGCTCAGATTCGT
CTTCAGATAGCAGCGATGACGACGATGATCCTAAAACTCGTAAGAAACGT
CGTCGTTCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029073XLOC_029073Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045496-proteinTCONS_00045496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045496-exon-sc0008085-1491911889:1..615TCONS_00045496-exon-sc0008085-1491911889:1..615Clytia hemisphaericaexon
TCONS_00045496-exon-sc0008085-1510915933:1..615TCONS_00045496-exon-sc0008085-1510915933:1..615Clytia hemisphaericaexon
TCONS_00045496-exon-sc0008085-1575043694:1..615TCONS_00045496-exon-sc0008085-1575043694:1..615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008085supercontigsc0008085:1..615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.3436	3.54739	2.30088	3.27909	9.35973	4.77471	12.2502	7.7143	4.64829	10.0326	6.32313	4.73884	4.64242	3.93104	5.63194	9.62541	10.242	8.20428	4.85085	3.42857	5.26017	4.34382	9.59385	8.46298	5.7344	5.78454	2.44592	1.39035	8.47165	8.9192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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