TCONS_00045479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045479
Unique NameTCONS_00045479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045479 ID=TCONS_00045479|Name=TCONS_00045479|organism=Clytia hemisphaerica|type=transcript|length=628bp
ttgtcaatcgaatatgcaaaaatatttggcaatcagggcaaaaatggcat
attttgaagtcaatcgaattgggtGTAGGTTGagaaaaaactgtcgccca
ctTCGCACGAAGGTGGATACGGCCTTTAAGTTAAATTAATTAAGAAACTT
NATGCACAATTGTATTCATTTTTAGCACACTTTCCCTGGACTAAAGGTGG
ATACCGGCCTTAAAGGTTAATTCGATTTCTTCCGGACAAGCATTTCTACT
GATAACAATTTCCCAGTGTCGTCTTCTTTTGTAATCTGTTTCCACCGTAG
ACCCGGGACTGCTTTTTCCCCTATCTTTCCTGTTAAAACAACATCCCCAC
ACTCTTTGTACCACCAACCAGCGTCTCCAAAGTGATTGCTGCATTTTAAT
CCATACAAATCATCATTATCTTGATCTTTTGTCGAGAACTTCATTCCATC
TAAGTCATTAAAATCGTCTCCATTAAGTCTAACTGGAAGACCTCCAGGGA
TGGCTAGTCTAGCTGGTAAAGGTTTGCCATATACATGTCTGTATGTACCA
ATATTGAGTTGGTATTTTGAATCTTCATCACCAACATTGAATTGATCATA
ATAAGGATAATAAAACTGGTTATCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00045479-protein

>TCONS_00045479-protein ID=TCONS_00045479-protein|Name=TCONS_00045479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
EDNQFYYPYYDQFNVGDEDSKYQLNIGTYRHVYGKPLPARLAIPGGLPVR
LNGDDFNDLDGMKFSTKDQDNDDLYGLKCSNHFGDAGWWYKECGDVVLTG
KIGEKAVPGLRWKQITKEDDTGKLLSVEMLVRKKSN
Run BLAST on NCBI

transcript from alignment at sc0007993:3..630

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045479 ID=TCONS_00045479|Name=TCONS_00045479|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0007993:3..630 (Clytia hemisphaerica)
CGAAGATAACCAGTTTTATTATCCTTATTATGATCAATTCAATGTTGGTG
ATGAAGATTCAAAATACCAACTCAATATTGGTACATACAGACATGTATAT
GGCAAACCTTTACCAGCTAGACTAGCCATCCCTGGAGGTCTTCCAGTTAG
ACTTAATGGAGACGATTTTAATGACTTAGATGGAATGAAGTTCTCGACAA
AAGATCAAGATAATGATGATTTGTATGGATTAAAATGCAGCAATCACTTT
GGAGACGCTGGTTGGTGGTACAAAGAGTGTGGGGATGTTGTTTTAACAGG
AAAGATAGGGGAAAAAGCAGTCCCGGGTCTACGGTGGAAACAGATTACAA
AAGAAGACGACACTGGGAAATTGTTATCAGTAGAAATGCTTGTCCGGAAG
AAATCGAATTAACCTTTAAGGCCGGTATCCACCTTTAGTCCAGGGAAAGT
GTGCTAAAAATGAATACAATTGTGCATNAAGTTTCTTAATTAATTTAACT
TAAAGGCCGTATCCACCTTCGTGCGAagtgggcgacagttttttctCAAC
CTACacccaattcgattgacttcaaaatatgccatttttgccctgattgc
caaatatttttgcatattcgattgacaa

Coding sequence (CDS) from alignment at sc0007993:3..630

>TCONS_00045479 ID=TCONS_00045479|Name=TCONS_00045479|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0007993:3..630 (Clytia hemisphaerica)
GAAGATAACCAGTTTTATTATCCTTATTATGATCAATTCAATGTTGGTGA
TGAAGATTCAAAATACCAACTCAATATTGGTACATACAGACATGTATATG
GCAAACCTTTACCAGCTAGACTAGCCATCCCTGGAGGTCTTCCAGTTAGA
CTTAATGGAGACGATTTTAATGACTTAGATGGAATGAAGTTCTCGACAAA
AGATCAAGATAATGATGATTTGTATGGATTAAAATGCAGCAATCACTTTG
GAGACGCTGGTTGGTGGTACAAAGAGTGTGGGGATGTTGTTTTAACAGGA
AAGATAGGGGAAAAAGCAGTCCCGGGTCTACGGTGGAAACAGATTACAAA
AGAAGACGACACTGGGAAATTGTTATCAGTAGAAATGCTTGTCCGGAAGA
AATCGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029056XLOC_029056Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045479-proteinTCONS_00045479-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045479-exon-sc0007993-1491911889:3..630TCONS_00045479-exon-sc0007993-1491911889:3..630Clytia hemisphaericaexon
TCONS_00045479-exon-sc0007993-1510915933:3..630TCONS_00045479-exon-sc0007993-1510915933:3..630Clytia hemisphaericaexon
TCONS_00045479-exon-sc0007993-1575043694:3..630TCONS_00045479-exon-sc0007993-1575043694:3..630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007993supercontigsc0007993:3..630 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.260293	0	0	0	0.305878	0.0821471	0.0883807	0	0.464926	0.296587	0.234483	0.215452	0.159744	0	0.260601	0.414472	0.114031	0.179595	0.131329	1.165	2.55963	5.46855	8.97549	0.116103	0	0.0939798	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top