TCONS_00045448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045448
Unique NameTCONS_00045448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045448 ID=TCONS_00045448|Name=TCONS_00045448|organism=Clytia hemisphaerica|type=transcript|length=671bp
AGGATTCACTGTTCCACCCCTCCCGCCACAACCCGAAATCACTTCACAGC
CAACCCTTTCACAACCAGAACCAGAACACACTGGTCCTCCCCTACAGCCT
AATCCTGAATTTACTATTCCACCCCTCCCGTCACACCCAACCGAACCAGA
GGTCAAAGCTAAAGATTTAATGAATGAATTCCAAGAATGTTTGGTACAAG
TCAATCCAAACCCTCAACAAGCACCTCATAACCGTATGGACAAACTCAAA
TGCAACGCTCGCAAAGTACTAAAACGAAGATGCCAAGACCCAAATTCTTA
TTGTCATTTATATAAAAGTTCTCTGACAGGTTACCAGAACCTCCATTGTC
ATCAATGCAATGGAGAGTTGTTTACGGAGAGCATTCTTCAGAACCAGTGT
GTTGCCTTACCTGACGAACATATTATATGGTCAATTCACTTAAGCTTCAC
GCGGACGTCCACAAGACTGACATTGGATACACAGGATGAAAATGTCGGTG
AACAGGTAATGGGCTCTTCttgaaaatgttcgtacatgggggatggagga
tatagtgtccgggggtagtgaaaaattccacaaaatttaccttgtccggg
gggtaaacttgctctgttttaGGGTAAATGTCCAgagggtcaactgatgc
ttgtcggGGGGGTTAGACTTG
Run BLAST on NCBI

protein sequence of TCONS_00045448-protein

>TCONS_00045448-protein ID=TCONS_00045448-protein|Name=TCONS_00045448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
GFTVPPLPPQPEITSQPTLSQPEPEHTGPPLQPNPEFTIPPLPSHPTEPE
VKAKDLMNEFQECLVQVNPNPQQAPHNRMDKLKCNARKVLKRRCQDPNSY
CHLYKSSLTGYQNLHCHQCNGELFTESILQNQCVALPDEHIIWSIHLSFT
RTSTRLTLDTQDENVGEQVMGSS
Run BLAST on NCBI

transcript from alignment at sc0007865:20..690

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045448 ID=TCONS_00045448|Name=TCONS_00045448|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at sc0007865:20..690 (Clytia hemisphaerica)
CAAGTCTAACCCCCccgacaagcatcagttgaccctcTGGACATTTACCC
taaaacagagcaagtttaccccccggacaaggtaaattttgtggaatttt
tcactacccccggacactatatcctccatcccccatgtacgaacattttc
aaGAAGAGCCCATTACCTGTTCACCGACATTTTCATCCTGTGTATCCAAT
GTCAGTCTTGTGGACGTCCGCGTGAAGCTTAAGTGAATTGACCATATAAT
ATGTTCGTCAGGTAAGGCAACACACTGGTTCTGAAGAATGCTCTCCGTAA
ACAACTCTCCATTGCATTGATGACAATGGAGGTTCTGGTAACCTGTCAGA
GAACTTTTATATAAATGACAATAAGAATTTGGGTCTTGGCATCTTCGTTT
TAGTACTTTGCGAGCGTTGCATTTGAGTTTGTCCATACGGTTATGAGGTG
CTTGTTGAGGGTTTGGATTGACTTGTACCAAACATTCTTGGAATTCATTC
ATTAAATCTTTAGCTTTGACCTCTGGTTCGGTTGGGTGTGACGGGAGGGG
TGGAATAGTAAATTCAGGATTAGGCTGTAGGGGAGGACCAGTGTGTTCTG
GTTCTGGTTGTGAAAGGGTTGGCTGTGAAGTGATTTCGGGTTGTGGCGGG
AGGGGTGGAACAGTGAATCCT

Coding sequence (CDS) from alignment at sc0007865:20..690

>TCONS_00045448 ID=TCONS_00045448|Name=TCONS_00045448|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0007865:20..690 (Clytia hemisphaerica)
tcaaGAAGAGCCCATTACCTGTTCACCGACATTTTCATCCTGTGTATCCA
ATGTCAGTCTTGTGGACGTCCGCGTGAAGCTTAAGTGAATTGACCATATA
ATATGTTCGTCAGGTAAGGCAACACACTGGTTCTGAAGAATGCTCTCCGT
AAACAACTCTCCATTGCATTGATGACAATGGAGGTTCTGGTAACCTGTCA
GAGAACTTTTATATAAATGACAATAAGAATTTGGGTCTTGGCATCTTCGT
TTTAGTACTTTGCGAGCGTTGCATTTGAGTTTGTCCATACGGTTATGAGG
TGCTTGTTGAGGGTTTGGATTGACTTGTACCAAACATTCTTGGAATTCAT
TCATTAAATCTTTAGCTTTGACCTCTGGTTCGGTTGGGTGTGACGGGAGG
GGTGGAATAGTAAATTCAGGATTAGGCTGTAGGGGAGGACCAGTGTGTTC
TGGTTCTGGTTGTGAAAGGGTTGGCTGTGAAGTGATTTCGGGTTGTGGCG
GGAGGGGTGGAACAGTGAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029026XLOC_029026Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045448-proteinTCONS_00045448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045448-exon-sc0007865-1491911889:20..690TCONS_00045448-exon-sc0007865-1491911889:20..690Clytia hemisphaericaexon
TCONS_00045448-exon-sc0007865-1510915933:20..690TCONS_00045448-exon-sc0007865-1510915933:20..690Clytia hemisphaericaexon
TCONS_00045448-exon-sc0007865-1575043694:20..690TCONS_00045448-exon-sc0007865-1575043694:20..690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007865supercontigsc0007865:20..690 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.614333	0.449304	0.0869474	0.425322	0.724905	0.736495	7.20713	7.94879	4.65918	6.97347	4.59021	5.11428	2.86002	2.43977	0.305234	1.21666	1.38353	1.24082	4.57135	2.05011	0.742465	0.651867	0.616335	1.20072	0.74203	0.662244	0.421186	0.786628	0.511396	1.04206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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